Harpia harpyja isolate bHarHar1 chromosome 27, bHarHar1 primary haplotype, whole genome shotgun sequence.
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Accipitriformes; Accipitridae; Accipitrinae; Harpia.
REFSEQ INFORMATION: The reference sequence is identical to\nCM048740.1.\nAssembly name: bHarHar1 primary haplotype\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Vertebrate Genomes Project on\n2022/11/27. The original whole-genome shotgun project has the\naccession JAPMHW000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Vertebrate Genomes Project\nAssembly Date :: 28-SEP-2021\nAssembly Method :: Hifiasm v. 0.15.1-r334; purge_dups v.\n 1.2.5; Bionano solve v. 3.6; Salsa v. 2.3\nAssembly Name :: bHarHar1 primary haplotype\nDiploid :: Principal Haplotype\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 54.0x\nSequencing Technology :: PacBio Sequel II HiFi; Bionano optical\n mapping; Arima HiC\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Status :: Updated annotation\nAnnotation Name :: GCF_026419915.1-RS_2023_02\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 10.1\nAnnotation Method :: Gnomon; cmsearch; tRNAscan-SE\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\nAnnotation Date :: 02/25/2023\n##Genome-Annotation-Data-END##
Brazil: Sao Jose do Laguinho / / Gleba Vila Amazonia in the municipality of Parintins
eukaryotic translation elongation factor 1 gamma; Derived by automated computational analysis using gene prediction method: Gnomon.
eukaryotic translation elongation factor 1 gamma
COORDINATES: polyA evidence [ECO:0006239]
Derived by automated computational analysis using gene prediction method: Gnomon.
basic proline-rich protein-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
AHNAK nucleoprotein; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 15 bases in 13 codons; deleted 4 bases in 3 codons
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 15 bases in 13 codons; deleted 4 bases in 3 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: neuroblast differentiation-associated protein AHNAK
beta-1,4-glucuronyltransferase 1; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: beta-1,4-glucuronyltransferase 1
fibroin heavy chain-like; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger HIT-type containing 2; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 3 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 3 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: zinc finger HIT domain-containing protein 2
FAU ubiquitin like and ribosomal protein S30 fusion; Derived by automated computational analysis using gene prediction method: Gnomon.
FAU ubiquitin like and ribosomal protein S30 fusion
FAU ubiquitin-like and ribosomal protein S30
mitochondrial ribosomal protein L49; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: 39S ribosomal protein L49, mitochondrial
pre-mRNA-processing factor 39-like; Derived by automated computational analysis using gene prediction method: Gnomon.
synoviolin 1; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128135992; Derived by automated computational analysis using gene prediction method: Gnomon.
speedy/RINGO cell cycle regulator family member C; Derived by automated computational analysis using gene prediction method: Gnomon.
speedy/RINGO cell cycle regulator family member C
calpain 1; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 19 Proteins
DNA polymerase alpha 2, accessory subunit; Derived by automated computational analysis using gene prediction method: Gnomon.
DNA polymerase alpha 2, accessory subunit, transcript variant X1
DNA polymerase alpha subunit B isoform X1
DNA polymerase alpha 2, accessory subunit, transcript variant X3
DNA polymerase alpha subunit B isoform X3
DNA polymerase alpha 2, accessory subunit, transcript variant X2
DNA polymerase alpha subunit B isoform X2
CDC42 effector protein 2; Derived by automated computational analysis using gene prediction method: Gnomon.
CDC42 effector protein 2, transcript variant X2
CDC42 effector protein 2, transcript variant X1
uncharacterized LOC128135994; Derived by automated computational analysis using gene prediction method: Gnomon.
CDC42 effector protein 2, transcript variant X3
CDC42 effector protein 2, transcript variant X4
CDC42 effector protein 2, transcript variant X5
double PHD fingers 2; Derived by automated computational analysis using gene prediction method: Gnomon.
double PHD fingers 2, transcript variant X1
double PHD fingers 2, transcript variant X2
solute carrier family 22 member 6-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 36 Proteins
solute carrier family 22 member 6; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 38 Proteins
solute carrier family 22 member 6-A-like; Derived by automated computational analysis using gene prediction method: Gnomon.
solute carrier family 22 member 6-A-like