Harpia harpyja isolate bHarHar1 chromosome 26, bHarHar1 primary haplotype, whole genome shotgun sequence.
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Accipitriformes; Accipitridae; Accipitrinae; Harpia.
REFSEQ INFORMATION: The reference sequence is identical to\nCM048739.1.\nAssembly name: bHarHar1 primary haplotype\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Vertebrate Genomes Project on\n2022/11/27. The original whole-genome shotgun project has the\naccession JAPMHW000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Vertebrate Genomes Project\nAssembly Date :: 28-SEP-2021\nAssembly Method :: Hifiasm v. 0.15.1-r334; purge_dups v.\n 1.2.5; Bionano solve v. 3.6; Salsa v. 2.3\nAssembly Name :: bHarHar1 primary haplotype\nDiploid :: Principal Haplotype\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 54.0x\nSequencing Technology :: PacBio Sequel II HiFi; Bionano optical\n mapping; Arima HiC\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Status :: Updated annotation\nAnnotation Name :: GCF_026419915.1-RS_2023_02\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 10.1\nAnnotation Method :: Gnomon; cmsearch; tRNAscan-SE\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\nAnnotation Date :: 02/25/2023\n##Genome-Annotation-Data-END##
Brazil: Sao Jose do Laguinho / / Gleba Vila Amazonia in the municipality of Parintins
CXXC-type zinc finger protein 1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: CXXC-type zinc finger protein 1-like
involucrin-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128135961; Derived by automated computational analysis using gene prediction method: Gnomon.
COORDINATES: polyA evidence [ECO:0006239]
MON1 homolog B, secretory trafficking associated; Derived by automated computational analysis using gene prediction method: Gnomon.
MON1 homolog B, secretory trafficking associated
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; deleted 6 bases in 5 codons
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; deleted 6 bases in 5 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: vacuolar fusion protein MON1 homolog B
uncharacterized LOC128135948; Derived by automated computational analysis using gene prediction method: Gnomon.
IMP U3 small nucleolar ribonucleoprotein 4; Derived by automated computational analysis using gene prediction method: Gnomon.
IMP U3 small nucleolar ribonucleoprotein 4
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon
LOW QUALITY PROTEIN: U3 small nucleolar ribonucleoprotein protein IMP4
coiled-coil domain containing 115; Derived by automated computational analysis using gene prediction method: Gnomon.
coiled-coil domain containing 115, transcript variant X1
coiled-coil domain containing 115, transcript variant X2
coiled-coil domain-containing protein 115 isoform X1
coiled-coil domain-containing protein 115 isoform X2
ubiquitin like modifier activating enzyme 1; Derived by automated computational analysis using gene prediction method: Gnomon.
ubiquitin like modifier activating enzyme 1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 26 Proteins
ubiquitin-like modifier-activating enzyme 1
NADH:ubiquinone oxidoreductase subunit B11; Derived by automated computational analysis using gene prediction method: Gnomon.
NADH:ubiquinone oxidoreductase subunit B11
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 11, mitochondrial
RNA binding motif protein 10; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins
LOW QUALITY PROTEIN: RNA-binding protein 10
complement factor properdin; Derived by automated computational analysis using gene prediction method: Gnomon.
synapsin I; Derived by automated computational analysis using gene prediction method: Gnomon.
proline-rich protein 2-like; Derived by automated computational analysis using gene prediction method: Gnomon.
ubiquitously expressed prefoldin like chaperone; Derived by automated computational analysis using gene prediction method: Gnomon.
ubiquitously expressed prefoldin like chaperone
cyclin-dependent kinase 16-like; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; deleted 2 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; deleted 2 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: cyclin-dependent kinase 16-like
uncharacterized LOC128135971; Derived by automated computational analysis using gene prediction method: Gnomon.
RNA-binding protein 3-like; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; deleted 1 base in 1 codon
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: RNA-binding protein 3-like
uncharacterized LOC128135987; Derived by automated computational analysis using gene prediction method: Gnomon.
acyl-CoA dehydrogenase very long chain; Derived by automated computational analysis using gene prediction method: Gnomon.
very long-chain specific acyl-CoA dehydrogenase, mitochondrial
discs large MAGUK scaffold protein 4; Derived by automated computational analysis using gene prediction method: Gnomon.
discs large MAGUK scaffold protein 4, transcript variant X3
discs large MAGUK scaffold protein 4, transcript variant X2
discs large MAGUK scaffold protein 4, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins
discs large MAGUK scaffold protein 4, transcript variant X1
mannose-P-dolichol utilization defect 1; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 Proteins
LOW QUALITY PROTEIN: mannose-P-dolichol utilization defect 1 protein
eukaryotic initiation factor 4A-I-like; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 34 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: eukaryotic initiation factor 4A-I-like
GABA type A receptor-associated protein; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: gamma-aminobutyric acid receptor-associated protein
CTD nuclear envelope phosphatase 1; Derived by automated computational analysis using gene prediction method: Gnomon.
elongator acetyltransferase complex subunit 5; Derived by automated computational analysis using gene prediction method: Gnomon.
elongator acetyltransferase complex subunit 5
claudin 7; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 34 Proteins
zinc finger MYND-type containing 15; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger MYND domain-containing protein 15
uncharacterized LOC128135981; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128135981, transcript variant X1
uncharacterized LOC128135981, transcript variant X2
uncharacterized protein LOC128135981 isoform X1
uncharacterized protein LOC128135981 isoform X2
mediator complex subunit 11; Derived by automated computational analysis using gene prediction method: Gnomon.
mediator of RNA polymerase II transcription subunit 11
arrestin beta 2; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 18 Proteins
proline, glutamate and leucine rich protein 1; Derived by automated computational analysis using gene prediction method: Gnomon.
proline, glutamate and leucine rich protein 1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
proline-, glutamic acid- and leucine-rich protein 1
small nuclear RNA activating complex polypeptide 2; Derived by automated computational analysis using gene prediction method: Gnomon.
small nuclear RNA activating complex polypeptide 2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins
snRNA-activating protein complex subunit 2
COP9 signalosome subunit 6; Derived by automated computational analysis using gene prediction method: Gnomon.
minichromosome maintenance complex component 7; Derived by automated computational analysis using gene prediction method: Gnomon.
minichromosome maintenance complex component 7
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 17 Proteins
adaptor related protein complex 4 subunit mu 1; Derived by automated computational analysis using gene prediction method: Gnomon.
adaptor related protein complex 4 subunit mu 1, transcript variant X2
adaptor related protein complex 4 subunit mu 1, transcript variant X1
adaptor related protein complex 4 subunit mu 1, transcript variant X3
stromal antigen 3; Derived by automated computational analysis using gene prediction method: Gnomon.
stromal antigen 3, transcript variant X1
stromal antigen 3, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 23 Proteins
stromal antigen 3, transcript variant X3
stromal antigen 3, transcript variant X2
galactose-3-O-sulfotransferase 4; Derived by automated computational analysis using gene prediction method: Gnomon.
galactose-3-O-sulfotransferase 4, transcript variant X2
galactose-3-O-sulfotransferase 4, transcript variant X1
galactose-3-O-sulfotransferase 4 isoform X1
galactose-3-O-sulfotransferase 4 isoform X2
trafficking protein particle complex subunit 14; Derived by automated computational analysis using gene prediction method: Gnomon.
trafficking protein particle complex subunit 14
late endosomal/lysosomal adaptor, MAPK and MTOR activator 4; Derived by automated computational analysis using gene prediction method: Gnomon.
late endosomal/lysosomal adaptor, MAPK and MTOR activator 4, transcript variant X1
late endosomal/lysosomal adaptor, MAPK and MTOR activator 4, transcript variant X2
late endosomal/lysosomal adaptor, MAPK and MTOR activator 4, transcript variant X3
ragulator complex protein LAMTOR4 isoform X1
ragulator complex protein LAMTOR4 isoform X3
ragulator complex protein LAMTOR4 isoform X2