Harpia harpyja isolate bHarHar1 chromosome 24, bHarHar1 primary haplotype, whole genome shotgun sequence.
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Accipitriformes; Accipitridae; Accipitrinae; Harpia.
REFSEQ INFORMATION: The reference sequence is identical to\nCM048737.1.\nAssembly name: bHarHar1 primary haplotype\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Vertebrate Genomes Project on\n2022/11/27. The original whole-genome shotgun project has the\naccession JAPMHW000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Vertebrate Genomes Project\nAssembly Date :: 28-SEP-2021\nAssembly Method :: Hifiasm v. 0.15.1-r334; purge_dups v.\n 1.2.5; Bionano solve v. 3.6; Salsa v. 2.3\nAssembly Name :: bHarHar1 primary haplotype\nDiploid :: Principal Haplotype\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 54.0x\nSequencing Technology :: PacBio Sequel II HiFi; Bionano optical\n mapping; Arima HiC\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Status :: Updated annotation\nAnnotation Name :: GCF_026419915.1-RS_2023_02\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 10.1\nAnnotation Method :: Gnomon; cmsearch; tRNAscan-SE\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\nAnnotation Date :: 02/25/2023\n##Genome-Annotation-Data-END##
Brazil: Sao Jose do Laguinho / / Gleba Vila Amazonia in the municipality of Parintins
ubiquitin carboxyl-terminal hydrolase 42-like; Derived by automated computational analysis using gene prediction method: Gnomon.
ubiquitin carboxyl-terminal hydrolase 42-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
Derived by automated computational analysis using gene prediction method: Gnomon.
E3 ubiquitin-protein ligase RBBP6-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: substituted 1 base at 1 genomic stop codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase RBBP6-like
uncharacterized LOC128135785; Derived by automated computational analysis using gene prediction method: Gnomon.
ADP-ribosylhydrolase ARH1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
COORDINATES: polyA evidence [ECO:0006239]
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: ADP-ribosylhydrolase ARH1-like
maestro heat-like repeat-containing protein family member 7; Derived by automated computational analysis using gene prediction method: Gnomon.
maestro heat-like repeat-containing protein family member 7
uncharacterized LOC128135799; Derived by automated computational analysis using gene prediction method: Gnomon.
maestro heat-like repeat family member 5; Derived by automated computational analysis using gene prediction method: Gnomon.
maestro heat-like repeat family member 5
uncharacterized LOC128135741; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
SH3 domain binding kinase family member 3; Derived by automated computational analysis using gene prediction method: Gnomon.
SH3 domain binding kinase family member 3
uncharacterized serine/threonine-protein kinase SBK3
uncharacterized LOC128135764; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger protein 628-like; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 18 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: zinc finger protein 628-like
deleted in malignant brain tumors 1 protein-like; Derived by automated computational analysis using gene prediction method: Gnomon.
deleted in malignant brain tumors 1 protein-like
zinc finger and SCAN domain-containing protein 2-like; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger and SCAN domain-containing protein 2-like
sulfotransferase 2B1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
sulfotransferase 2B1-like, transcript variant X2
sulfotransferase 2B1-like, transcript variant X3
sulfotransferase 2B1-like, transcript variant X1
soluble scavenger receptor cysteine-rich domain-containing protein SSC5D-like; Derived by automated computational analysis using gene prediction method: Gnomon.
soluble scavenger receptor cysteine-rich domain-containing protein SSC5D-like, transcript variant X1
soluble scavenger receptor cysteine-rich domain-containing protein SSC5D-like, transcript variant X2
soluble scavenger receptor cysteine-rich domain-containing protein SSC5D-like isoform X1
soluble scavenger receptor cysteine-rich domain-containing protein SSC5D-like isoform X2
deleted in malignant brain tumors 1 protein-like, transcript variant X1
deleted in malignant brain tumors 1 protein-like isoform X1
deleted in malignant brain tumors 1 protein-like, transcript variant X2
deleted in malignant brain tumors 1 protein-like isoform X2
butyrophilin subfamily 2 member A1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins
butyrophilin subfamily 2 member A2-like; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: butyrophilin subfamily 2 member A2-like
butyrophilin subfamily 3 member A1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins
uncharacterized LOC128135802; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128135786; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128135786, transcript variant X2
uncharacterized protein LOC128135786 isoform X2
uncharacterized LOC128135786, transcript variant X1
uncharacterized protein LOC128135786 isoform X1
uncharacterized LOC128135789; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128135789, transcript variant X9
uncharacterized LOC128135789, transcript variant X10
uncharacterized LOC128135789, transcript variant X5
uncharacterized LOC128135789, transcript variant X1
uncharacterized LOC128135789, transcript variant X8
uncharacterized LOC128135789, transcript variant X3
uncharacterized LOC128135789, transcript variant X2
uncharacterized LOC128135789, transcript variant X7
uncharacterized LOC128135789, transcript variant X4
uncharacterized protein LOC128135789 isoform X1
uncharacterized protein LOC128135789 isoform X3
uncharacterized protein LOC128135789 isoform X6
uncharacterized protein LOC128135789 isoform X7
uncharacterized protein LOC128135789 isoform X5
uncharacterized LOC128135789, transcript variant X6
uncharacterized protein LOC128135789 isoform X4
uncharacterized protein LOC128135789 isoform X2
uncharacterized LOC128135770; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger protein 696-like; Derived by automated computational analysis using gene prediction method: Gnomon.
natterin-3-like; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128135801; Derived by automated computational analysis using gene prediction method: Gnomon.
charged multivesicular body protein 2A; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: charged multivesicular body protein 2a
ubiquitin conjugating enzyme E2 M; Derived by automated computational analysis using gene prediction method: Gnomon.
tripartite motif containing 28; Derived by automated computational analysis using gene prediction method: Gnomon.
tripartite motif containing 28, transcript variant X4
tripartite motif containing 28, transcript variant X2
tripartite motif containing 28, transcript variant X3
tripartite motif containing 28, transcript variant X1
transcription intermediary factor 1-beta isoform X4
transcription intermediary factor 1-beta isoform X2
transcription intermediary factor 1-beta isoform X3
transcription intermediary factor 1-beta isoform X1
zinc finger protein 239-like; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger and BTB domain containing 45; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger and BTB domain containing 45, transcript variant X2
zinc finger and BTB domain containing 45, transcript variant X1
zinc finger and BTB domain-containing protein 45 isoform X2
zinc finger and BTB domain-containing protein 45 isoform X1
THAP domain containing 7; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 2 codons
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: THAP domain-containing protein 7
solute carrier family 27 member 5; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: long-chain fatty acid transport protein 5
transfer RNA glutamine (anticodon CUG); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
transfer RNA lysine (anticodon UUU); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
histone H2A type 2-C-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 98 Proteins
histone H2B 5-like; Derived by automated computational analysis using gene prediction method: Gnomon.
transfer RNA glycine (anticodon GCC); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
transfer RNA asparagine (anticodon GUU); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
transfer RNA serine (anticodon GCU); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
transfer RNA alanine (anticodon CGC); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
transfer RNA methionine (anticodon CAU); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
transfer RNA aspartic acid (anticodon GUC); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
transfer RNA threonine (anticodon AGU); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
transfer RNA glutamic acid (anticodon CUC); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
Josephin domain containing 2; Derived by automated computational analysis using gene prediction method: Gnomon.
aspartate dehydrogenase domain containing; Derived by automated computational analysis using gene prediction method: Gnomon.
aspartate dehydrogenase domain containing
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: aspartate dehydrogenase domain-containing protein
uncharacterized LOC128135776; Derived by automated computational analysis using gene prediction method: Gnomon.