Candidatus Vallotia lariciata isolate Ad13-081_Vallotia plasmid unnamed, complete sequence.
type: Entry
definition: Candidatus Vallotia lariciata isolate Ad13-081_Vallotia plasmid unnamed, complete sequence.
sequence version: NZ_CP047398.1
sequence date: 2023-03-23
sequence: sequence
division: CON
label: NZ_CP047398.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN13320560
keyword: RefSeq
source: Candidatus Vallotia lariciata
organism: Candidatus Vallotia lariciata
taxonomy: Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Candidatus Vallotia.
reference: 1
references: 34508228
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP047398.1.\nAnnotated using prokka 1.14.0 from\nhttps://github.com/tseemann/prokka.\nBacteria and source DNA available from Carol von Dohlen. Department\nof Biology, 5305 Old Main Hill, Utah State University, Logan, Utah\n84322 USA.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 2019\nAssembly Method :: SPAdes v. 3.12.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 264.0x\nSequencing Technology :: Illumina NextSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/23/2023 04:02:13\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 787\nCDSs (total) :: 732\nGenes (coding) :: 694\nCDSs (with protein) :: 694\nGenes (RNA) :: 55\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 43\nncRNAs :: 3\nPseudo Genes (total) :: 38\nCDSs (without protein) :: 38\nPseudo Genes (ambiguous residues) :: 0 of 38\nPseudo Genes (frameshifted) :: 18 of 38\nPseudo Genes (incomplete) :: 26 of 38\nPseudo Genes (internal stop) :: 17 of 38\nPseudo Genes (multiple problems) :: 17 of 38\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 61393
topology: circular
so has quality: SO_0000988
location: 1..61393
location: region:1-61393:1
RO_0002162: 2018052

NZ_CP047398
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN13320560
type: BioSample
SIO_000068: biosample

1
title: Transitional genomes and nutritional role reversals identified for dual symbionts of adelgids (Aphidoidea: Adelgidae)
author: Dial, D.T.
author: Weglarz, K.M.
author: Aremu, A.O.
author: Havill, N.P.
author: Pearson, T.A.
author: Burke, G.R.
author: von Dohlen, C.D.
journal: ISME J
volume: 16
issue: 3
pages: 642-654
year: 2022
pubmed: 34508228

34508228
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
author: Dial, D.T.
author: Burke, G.R.
author: Weglarz, K.M.
author: Havill, N.P.
author: von Dohlen, C.D.
journal: Submitted (07-JAN-2020) Department of Entomology, University of Georgia, 120 Cedar St, 419 Biological Sciences Building, Athens, GA 30602, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:61393:1
position: 61393
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-61393:1:source
so part of: sequence
organism: Candidatus Vallotia lariciata
mol type: genomic DNA
isolate: Ad13-081_Vallotia
host: Adelges lariciatus
plasmid: unnamed
country: Canada: Vernon, BC. Kalamalka Seed Orch
collection date: 2013-06-21
collected by: Jim Corrigan

2018052
type: Taxonomy
SIO_000068: taxonomy

GKR41_RS00005
type: Gene
subclass of: SO_0000704
RO_0002162: 2018052
locus tag: GKR41_RS00005
old locus tag: GKR41_p00001
so part of: sequence
location: 1..3423
location: region:1-3423:1
so has part: feature:1-3423:1:exon
subclass of: SO_0000010

position:3423:1
position: 3423
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-3423:1:exon

GKR41_RS00005
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2018052
locus tag: GKR41_RS00005
old locus tag: GKR41_p00001
EC number: 3.1.11.5
inference: COORDINATES: protein motif:HMM:NF016169.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: exodeoxyribonuclease V subunit gamma
translation: MLKLFYSNRYEVLTTALLSDLEHIDHDLWRPQTIIVPNMAVRRRLELDYADWFGLCANIEFCYLPQWLWTQIARVEVVHAPQESPFVPERLVWILYKLLTQRSTICSGDNQDLLSRLDLYLALADPVMIFDLANRISHIFNHYIIYRPYWLSQWLTGKSLFSLNQQLSCGEQWIASETPIQRADESWQAQLWRDILKELAGAGDVSLDVLEQVSPPAHRFLEIISKLDLGDVARANWPAQVSLFALPTIPLLHVQLLSELSRWIDIRIYILNPCREHWFNIIKNQHSNKLHAVEQIDYQRFRHPLLTEWGRQTQAQLALLHDHIDCAVASVRSKFIEASANSWLSVLQNSILSPKHPVSLFTRPELDGIEVHVCHSLMRQFEVLHNRLLAAFDADPSLTPADILIVVPDLIAAAPIVSAVFGMVTLNDPCRIPYRITGLPPYHANALARTLLDWLTLGDRTVNASALIEWLRVDEIAARYDIDPVALETVQRWLKNAGAFRSFSPNERRDVNTPRTYHTFSDALMRLFLGYAMPDNAPPVANWLPIAIPIGSADAMLLGRLAQFIDELDAFVLACTIPKTITQWRNLVNSAIKQFFGFCSSNSNSLSKLFAILNTLFVQIEASAPDTLLPAAVLHTALLSAMYDPSGGGVPSGAVTISSLSSLRGVSFRIICIAGIDDGVLPTRVRSDEFDLMVLFEQLGDWKCRDDDRNLFLDLILAARDTLLLSYTGRNIRDNSTMLPSALLIELLDYLALLKSGKAASVEDIALAHRSFITEHPLQSFEPSYFSIAGPLLTYDEDRAQTATAIANHACQNRTTSLFFSDALPPNMCETIRLEKLVRFWHHPQKVLLRERLGIVFHRAQTKLSDIEPYEFNYAARDALSKRILPLLVESSVYIERAYEIARALPELPGGATGRAIQEREVMTLSRLAKKIRDRSSSKLESVEFSFRVAPHWPRQLESVSELLDRVPAWSETVLLPTILSGVLDNTTHNELVLYRYARPTVRDYLDAWLRHLCWCVINPQASRQTLWVGPDTHFVFTMPQNPHIYLSELCALYRAGLRAPLRFFQKSGWLFMSKHVSAANQAWSNDRTGGELADPAIRLALRGTSMTLDNISIVIAKTVFEPLLAHLQLAEELHDFRRA
SIO_010081: GKR41_RS00005
subclass of: SO_0000673
so part of: GKR41_RS00005
location: 1..3423
location: region:1-3423:1
so has part: feature:1-3423:1:exon

WP_226809545.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1-3423:1:exon

GKR41_RS00010
type: Gene
subclass of: SO_0000704
RO_0002162: 2018052
gene: recB
locus tag: GKR41_RS00010
old locus tag: GKR41_p00002
so part of: sequence
location: 3404..7129
location: region:3404-7129:1
so has part: feature:3404-7129:1:exon
subclass of: SO_0000010

position:3404:1
position: 3404
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7129:1
position: 7129
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3404-7129:1:exon

GKR41_RS00010
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2018052
gene: recB
locus tag: GKR41_RS00010
old locus tag: GKR41_p00002
EC number: 3.1.11.5
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013428657.1
GO component: GO:0009338 - exodeoxyribonuclease V complex [Evidence IEA]
GO function: GO:0008854 - exodeoxyribonuclease V activity [Evidence IEA]
GO process: GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: exodeoxyribonuclease V subunit beta
translation: MTFDALELDVFTCELNGVTQIEASAGTGKTWNICALYLRLLLEKNLQVDQILVVTFTKAATTELHARIRSHLMRLEKSLVLGDPFLTDLIRRIVDTKTPEMSIQQALKQIRCALNGFDQAAIYTIHSFCQLALQESPFAAVMPFALEIETDDTALRFDIAAQFWGERVETEAARSTGFAYWLVSHGAGPAVLQELLAQRLRKPLAKIIWTDPVCDTTVDITIDYFKRAANLWRAERKQIEQWLVDSSAQLNQRTHKPTQIQAALMAWEHFFVRGDRWAPISKDALKLTSSSLIAATKTKCKPLIHAFSDYANVLVAALQAEHAIHLRLWFSLVREWLHMGPLIIAQRKRTARIMSFNDLPSNLYYALHARSGLVDALRERYSAALIDEFQDTDPLQFGIFKKIFAPQGPLFLVGDPKQAIYSFRGADLHTYLNARTYANASYTLAVNQRSDATIVAACNRLFSNNSRAFVLDGLDYCHVRAGIRRHPKFLDRRDPISITDRTRAALRVWWLPDHPLLNKRDAQYAAAEVCAAEIARIICDARSGNATIGIRSLTPADIAVLVQTHRQGMLMKQVFRKFNIGSVEFTQTSVFKTIDAEQFEYVLLAIDAPGDLQRLHAALATDWIGLDAMALWAMEQAESAMTEVNQYDSTHLSTNSSAWVEQFSGYQRLWQEHGFAPMWRIALRELNVIAHLASTNDGERRITDINHLTELIQVRDREHPGIAPTLCWLSAKRSDPGIGEDTQLRLASDRDLVQIVTIHKSKGLEYPVVFCPFLNNSVLGARPLYTKFSAAREYYCDDGLSILHFGCDGEEAKRIDYSVMREQAAERARLIYVAITRAIYRCYLVAGIYTSGVHGSTKESRQSILNWIVAGGEMHFDTWLKEPPKAAVLVEYWQALQNEQAASVIIMPLPTIVRHDLLLPPSDISQVPVRTRALKRRLFETWKTVSFSSLAISQQQLLPDIENILHVRPDHDDLTQVNIHTITSESETMLDNSQIGLDADDILRFPRGAAAGNCLHRLMELANLRDPLSWPTAIVRALTERPVNSHTFSDPQLTAMMMRLLRDIANTQLESDFMLGEMDPSRRLTELEFVFPITSLDMHRFSIMLREYGIVSETLDHGMLHGYLRGFIDAVIEFQGQFWIIDWKSNYLGNIANSYRTQMLSSLMDAHAYRLQALIYTIALHRYLRARLIDYDYEIHFGASLYLFLRGVRPNWPGSGIARFRPSFAAIKAFDALFTTKPKNA
SIO_010081: GKR41_RS00010
subclass of: SO_0000673
so part of: GKR41_RS00010
location: 3404..7129
location: region:3404-7129:1
so has part: feature:3404-7129:1:exon

WP_226809546.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3404-7129:1:exon

GKR41_RS00015
type: Gene
subclass of: SO_0000704
RO_0002162: 2018052
locus tag: GKR41_RS00015
old locus tag: GKR41_p00003
so part of: sequence
location: 7177..9396
location: region:7177-9396:1
so has part: feature:7177-9396:1:exon
subclass of: SO_0000010

position:7177:1
position: 7177
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9396:1
position: 9396
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7177-9396:1:exon

GKR41_RS00015
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2018052
locus tag: GKR41_RS00015
old locus tag: GKR41_p00003
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013428656.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: AAA family ATPase
translation: MSRTILSQAFSRRAAALAKHCGSSFSDARIAEAAAAMLSQALSIGHVCIELIVLAQKFGQQLDMIRASLIASGIAMCINDHDLIPHLPLVIDNDDRLYLGRYYEFERRLAKTLSIRARAEFDNTSSHDSHRWNNVLSRYFGKTSGSNINWQRVAAAIACSGQLTIINGGPGTGKTTTVLGILACLLNDQPNLRIALAAPTGKAAQHMLESLAPRKNRLDKNMAAQLPTIAYTLHRLLGSTPDGCFRYHLRNPLPYDVIVVDEASMIDIELASRLVDAIAPRARLILIGDKDQLSAVDAGSVFAELNAYPCYTGERSQRIARMVGCTANKLRNEFSEYVYYSSLKYAISSSNTVGYCGMSVDRRNQWNRPTTLPNSSIAETLPIKKPINNPQYCLPTQAISLIQSSASAQAIIPEQFTESSKITTSSLIEEPKQSNLFFDVNLTDRINIYKPEPDASKSVVCLPSPVLANCVVWLQTNYRFNPDSSIGKLSSAIRNGLSEDVLGMLDKTNNCAGSYFIEDSGPILSHRSREYIIQSFTCYIDLLIGMLKRQKIEAEALFNSLNAFRVLCAVRAGPYGVDALNNWITIKLLQLARSSFSSDTQWFTGRPIIVTRNNYALGLFNGDIGLALPSNDGRLRVVFERGAGNFQSVPPEMLSSHDTAFALTVHKSQGSEFKRVALVLPPTYSQTLSRELIYTAVTRARTQIAIIGTRSIIERAISTPTRRNTGLSARLRYAAVHNN
SIO_010081: GKR41_RS00015
subclass of: SO_0000673
so part of: GKR41_RS00015
location: 7177..9396
location: region:7177-9396:1
so has part: feature:7177-9396:1:exon

WP_226809547.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7177-9396:1:exon

GKR41_RS00020
type: Gene
subclass of: SO_0000704
RO_0002162: 2018052
gene: thiC
locus tag: GKR41_RS00020
old locus tag: GKR41_p00004
pseudo: true
so part of: sequence
location: complement(10396..12238)
location: region:10396-12238:-1
so has part: feature:10396-12238:-1:exon
subclass of: SO_0000010

position:10396:-1
position: 10396
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12238:-1
position: 12238
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10396-12238:-1:exon

GKR41_RS00020
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2018052
gene: thiC
locus tag: GKR41_RS00020
old locus tag: GKR41_p00004
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011869907.1
GO function: GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
GO process: GO:0009228 - thiamine biosynthetic process [Evidence IEA]
note: frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: phosphomethylpyrimidine synthase ThiC
SIO_010081: GKR41_RS00020
subclass of: SO_0000673
so part of: GKR41_RS00020
location: complement(10396..12238)
location: region:10396-12238:-1
so has part: feature:10396-12238:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:10396-12238:-1:exon

GKR41_RS00025
type: Gene
subclass of: SO_0000704
RO_0002162: 2018052
gene: rpsU
locus tag: GKR41_RS00025
old locus tag: GKR41_p00008
so part of: sequence
location: complement(13455..13667)
location: region:13455-13667:-1
so has part: feature:13455-13667:-1:exon
subclass of: SO_0000010

position:13455:-1
position: 13455
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13667:-1
position: 13667
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13455-13667:-1:exon

GKR41_RS00025
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2018052
gene: rpsU
locus tag: GKR41_RS00025
old locus tag: GKR41_p00008
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004202502.1
GO component: GO:0022627 - cytosolic small ribosomal subunit [Evidence IEA]; GO:0000314 - organellar small ribosomal subunit [Evidence IEA]
GO function: GO:0003735 - structural constituent of ribosome [Evidence IEA]
GO process: GO:0006412 - translation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: 30S ribosomal protein S21
translation: MTTVIPKPNEPVEVALRRFRRSIESTGLIKELRARTAYEKPTAERKRKKAAAVARLRKQIRRSLPPRKFY
SIO_010081: GKR41_RS00025
subclass of: SO_0000673
so part of: GKR41_RS00025
location: complement(13455..13667)
location: region:13455-13667:-1
so has part: feature:13455-13667:-1:exon

WP_225721845.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13455-13667:-1:exon

GKR41_RS00030
type: Gene
subclass of: SO_0000704
RO_0002162: 2018052
locus tag: GKR41_RS00030
old locus tag: GKR41_p00009
so part of: sequence
location: 16349..17536
location: region:16349-17536:1
so has part: feature:16349-17536:1:exon
subclass of: SO_0000010

position:16349:1
position: 16349
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17536:1
position: 17536
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16349-17536:1:exon

GKR41_RS00030
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2018052
locus tag: GKR41_RS00030
old locus tag: GKR41_p00009
EC number: 2.6.1.-
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012355737.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: amino acid aminotransferase
translation: MFEHVKAFPGDPILSLNEDFHDDPRDNKVNLSIGIYFDAYGNLPVMAAVRDAEYALAGEIEPRPYLPMAGLPDYRDAVHQLVFGNACSAHTKQRIATLQTLGGSGALKVGADFLRRTLPDAQVWISDPSWENHRVVFERAGFIVNTYPYYDSATGGVRFAAMLDALRVISHRHIVLLHACCHNPTGVDLDRNQWREVISLIEKKELLPFVDMAYQGFGMDLEDDAFAVRELTARGISCLVANSFSKNFALYGERCGGLSVVCQSDEEATRVLGQLTGAVRSNYSNPPTYGAKVVHRVLCTPALQESWKSELASMCRRITVMRHAIYERLQGRIPDAILSRYIQQRGMFTYTGLSAEQVDRLRTEHGVYLVRSGRMCIAGLNEQNIHVVANAIASV
SIO_010081: GKR41_RS00030
subclass of: SO_0000673
so part of: GKR41_RS00030
location: 16349..17536
location: region:16349-17536:1
so has part: feature:16349-17536:1:exon

WP_226809548.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16349-17536:1:exon

GKR41_RS00035
type: Gene
subclass of: SO_0000704
RO_0002162: 2018052
locus tag: GKR41_RS00035
old locus tag: GKR41_p00010
so part of: sequence
location: complement(18856..19695)
location: region:18856-19695:-1
so has part: feature:18856-19695:-1:exon
subclass of: SO_0000010

position:18856:-1
position: 18856
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:19695:-1
position: 19695
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18856-19695:-1:exon

GKR41_RS00035
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2018052
locus tag: GKR41_RS00035
old locus tag: GKR41_p00010
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013428378.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: alpha/beta hydrolase
translation: MIPMPHTQLVELADCSSVAFAQAGSGEPIVLIHGSLCDYRYWGPQFIPLAAMHRVLSLSLGHYFPTRELNRTLPFSWNSHVQQIVQFIDEIVREPVHVVAHSRGAYLAFHLARSFPERLRSVTLADPSGFVQNDEMVDYYALMCRIKTLHTRVMGLISQGETDAGLALFVDSVSCQGTWARSPDGFKKMIRDNAHTLWPQIMDQVPVFLTCDAREITLPVMLVVGEKSPSTFHRNIKWLHQHITGACKITIFGVSHGMNLAYPRAFNQAVLDFIKVNSR
SIO_010081: GKR41_RS00035
subclass of: SO_0000673
so part of: GKR41_RS00035
location: complement(18856..19695)
location: region:18856-19695:-1
so has part: feature:18856-19695:-1:exon

WP_226809549.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18856-19695:-1:exon

GKR41_RS00040
type: Gene
subclass of: SO_0000704
RO_0002162: 2018052
locus tag: GKR41_RS00040
old locus tag: GKR41_p00011
so part of: sequence
location: complement(19713..19946)
location: region:19713-19946:-1
so has part: feature:19713-19946:-1:exon
subclass of: SO_0000010

position:19713:-1
position: 19713
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:19946:-1
position: 19946
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19713-19946:-1:exon

GKR41_RS00040
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2018052
locus tag: GKR41_RS00040
old locus tag: GKR41_p00011
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013428377.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: H-NS family nucleoid-associated regulatory protein
translation: MDEQKRQKIIAYIHRQMAEYGISIERLSEALAENIQPILFRDAYGNVWDGKGEMPNWLKRAVYAGQSAEHFRVKTKP
SIO_010081: GKR41_RS00040
subclass of: SO_0000673
so part of: GKR41_RS00040
location: complement(19713..19946)
location: region:19713-19946:-1
so has part: feature:19713-19946:-1:exon

WP_226809550.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19713-19946:-1:exon

GKR41_RS00045
type: Gene
subclass of: SO_0000704
RO_0002162: 2018052
locus tag: GKR41_RS00045
old locus tag: GKR41_p00012
so part of: sequence
location: complement(20716..21186)
location: region:20716-21186:-1
so has part: feature:20716-21186:-1:exon
subclass of: SO_0000010

position:20716:-1
position: 20716
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:21186:-1
position: 21186
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20716-21186:-1:exon

GKR41_RS00045
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2018052
locus tag: GKR41_RS00045
old locus tag: GKR41_p00012
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018914127.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: HIT domain-containing protein
translation: MLHTSQLDMKDTVRYDENNIFARILRSELTCIKVSETKDVLAFMDLMPKADGHVLVVPKEAAAKIFDLSDAAGVACFRMVHRISIAIQAVFKPDGILVAQFNGVAAGQTIPHVHFHVIPRGTNKKLRLRERVIAKPEKLEEIAQLIRVQLSKSVNL
SIO_010081: GKR41_RS00045
subclass of: SO_0000673
so part of: GKR41_RS00045
location: complement(20716..21186)
location: region:20716-21186:-1
so has part: feature:20716-21186:-1:exon

WP_226809551.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20716-21186:-1:exon

GKR41_RS00050
type: Gene
subclass of: SO_0000704
RO_0002162: 2018052
gene: ahpC
locus tag: GKR41_RS00050
old locus tag: GKR41_p00013
so part of: sequence
location: complement(22459..23022)
location: region:22459-23022:-1
so has part: feature:22459-23022:-1:exon
subclass of: SO_0000010

position:22459:-1
position: 22459
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:23022:-1
position: 23022
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22459-23022:-1:exon

GKR41_RS00050
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2018052
gene: ahpC
locus tag: GKR41_RS00050
old locus tag: GKR41_p00013
EC number: 1.11.1.26
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017329783.1
GO function: GO:0102039 - NADH-dependent peroxiredoxin activity [Evidence IEA]
GO process: GO:0006979 - response to oxidative stress [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: alkyl hydroperoxide reductase subunit C
translation: MSLINTQVKPFKATAYHNRAFVTLTEENLKGKWSAIVFYPADFTFVCPTELGDLADHYAEFQKLGTEIYGVSTDTHFAHKSWCDTSETLSKIKYPLVGDPTATLARNFEVLIEEEGLAQRGTFVIDPSGKIKMYEIHDNGIGRNAEELLRKIQAAQYIASHPGEVCPARWTPGANTLKPSLNLIGKI
SIO_010081: GKR41_RS00050
subclass of: SO_0000673
so part of: GKR41_RS00050
location: complement(22459..23022)
location: region:22459-23022:-1
so has part: feature:22459-23022:-1:exon

WP_226809552.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:22459-23022:-1:exon

GKR41_RS00055
type: Gene
subclass of: SO_0000704
RO_0002162: 2018052
locus tag: GKR41_RS00055
old locus tag: GKR41_p00014
so part of: sequence
location: 23969..24436
location: region:23969-24436:1
so has part: feature:23969-24436:1:exon
subclass of: SO_0000010

position:23969:1
position: 23969
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:24436:1
position: 24436
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23969-24436:1:exon

GKR41_RS00055
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2018052
locus tag: GKR41_RS00055
old locus tag: GKR41_p00014
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013429005.1
GO function: GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO process: GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: transcriptional repressor
translation: MAALPGLSVDNITQAVQLARMYCQKRGELLTPLRQKVLSLLLQSGRATKAYTLLDEMRKIHSGSAPPTVYRALDFLQSVGLVHRIESINAFAVCHNLTHCRQGILIVCQCGAVAEIDAWGIHHVLVDKIASTGFTLIQGELELKGLCAECVIKSL
SIO_010081: GKR41_RS00055
subclass of: SO_0000673
so part of: GKR41_RS00055
location: 23969..24436
location: region:23969-24436:1
so has part: feature:23969-24436:1:exon

WP_226809555.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:23969-24436:1:exon

GKR41_RS00060
type: Gene
subclass of: SO_0000704
RO_0002162: 2018052
gene: parA
locus tag: GKR41_RS00060
old locus tag: GKR41_p00015
so part of: sequence
location: 25300..25959
location: region:25300-25959:1
so has part: feature:25300-25959:1:exon
subclass of: SO_0000010

position:25300:1
position: 25300
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:25959:1
position: 25959
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:25300-25959:1:exon

GKR41_RS00060
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2018052
gene: parA
locus tag: GKR41_RS00060
old locus tag: GKR41_p00015
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013429001.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family partition ATPase
translation: MTAKIIAVTQQKGGVGKSTIAMHLGAALHEKEKKVLVVDADGQNTLIHWSSTTCEEVGIPFSIVNLAEAGGEIHKEIKKFVNDYDLIIIDCPPSITEQISGIVLLVASIAIIPISSSPADYWSSIGLMKLIQQAQIINEDLKAVFLLNKTEEKRMLTRELKRSLKKLSFPLLKTRISTRECYKQAMALGKTVLQMTDRSSKLASAEIRACTNEILMLLK
SIO_010081: GKR41_RS00060
subclass of: SO_0000673
so part of: GKR41_RS00060
location: 25300..25959
location: region:25300-25959:1
so has part: feature:25300-25959:1:exon

WP_226809556.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:25300-25959:1:exon

GKR41_RS00065
type: Gene
subclass of: SO_0000704
RO_0002162: 2018052
locus tag: GKR41_RS00065
old locus tag: GKR41_p00016
so part of: sequence
location: 25978..27036
location: region:25978-27036:1
so has part: feature:25978-27036:1:exon
subclass of: SO_0000010

position:25978:1
position: 25978
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:27036:1
position: 27036
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:25978-27036:1:exon

GKR41_RS00065
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2018052
locus tag: GKR41_RS00065
old locus tag: GKR41_p00016
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004194498.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParB/RepB/Spo0J family partition protein
translation: MKSTQLARGFRARPDVTTSEKKTSLERLNTIDTWVKQKNNPDFSKSVVINKDNDIQSRTTNSRESAAYAIWRTKTEYTPGQIILLPLKRIKPSPFNPRYFYLKSSIQELAINLAKQGQQQAIHVIPDYQNPGTFFLSDGGRRVLALRESNQESVKAIVVDLPIGIESYKFGYDLNVQRDSQTVFDNAIIWQRFLDQQYFKSQRELAENLGIDESTVAVALGIAKLPEIIMKEMLTRPDRFGSNMAYQVARYHSEKGVNAALKLINKIVANDLSTRQVADIIKYKSLSSNMPQPLRRQRYKQRVEIKVDGVILGDLKLYGDDRLELKLKGLVPKKRDELLTKIEALFSKNIKC
SIO_010081: GKR41_RS00065
subclass of: SO_0000673
so part of: GKR41_RS00065
location: 25978..27036
location: region:25978-27036:1
so has part: feature:25978-27036:1:exon

WP_226809553.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:25978-27036:1:exon

GKR41_RS00070
type: Gene
subclass of: SO_0000704
RO_0002162: 2018052
locus tag: GKR41_RS00070
old locus tag: GKR41_p00017
so part of: sequence
location: complement(27094..28443)
location: region:27094-28443:-1
so has part: feature:27094-28443:-1:exon
subclass of: SO_0000010

position:27094:-1
position: 27094
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:28443:-1
position: 28443
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:27094-28443:-1:exon

GKR41_RS00070
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2018052
locus tag: GKR41_RS00070
old locus tag: GKR41_p00017
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013428999.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication initiation protein
translation: MATRVTKKKTDVVSQTSAELRKAVEAIAIQPKSGKITLLTRKLFNVLLAVAQKSDESGDTYRALLSDIVKNSAFDSHDTALIKEHLRRMVSVQVEWSTGTSSQKPGRKWGISTLIADAEILEDTATRRVWVEFSFAPKIKKKLLDPVQYARLSLQFQSQLRSSAGLALYEICIRYLTNPSHLTMREPWEWWRPILSGTPNSEGGDNAKREYKYFKRDYLRPAMAEVNAVTNINIELIEHREGRRISEIQFQVAERKQAMLEIDLHRNVFDSTVIERMVKLGIPLKDAQTIYNDNEENCIRAALQMTEQRMRSTTLPIVRSAAALFKDALKKGYAPPVEAAQMFPHIKKNSIVQDPKTRLLAEYAAYRRKQAQKFYDKQDNANQELIRESFEDEVLPSLGMHLRDEWRKRGTSSKIAETAFFDWFVLKTWGEPTDGDLLAFTLNYVHDTD
SIO_010081: GKR41_RS00070
subclass of: SO_0000673
so part of: GKR41_RS00070
location: complement(27094..28443)
location: region:27094-28443:-1
so has part: feature:27094-28443:-1:exon

WP_226809554.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:27094-28443:-1:exon

GKR41_RS00075
type: Gene
subclass of: SO_0000704
RO_0002162: 2018052
locus tag: GKR41_RS00075
old locus tag: GKR41_p00018
so part of: sequence
location: 31752..32498
location: region:31752-32498:1
so has part: feature:31752-32498:1:exon
subclass of: SO_0000010

position:31752:1
position: 31752
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:32498:1
position: 32498
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:31752-32498:1:exon

GKR41_RS00075
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2018052
locus tag: GKR41_RS00075
old locus tag: GKR41_p00018
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013428913.1
GO function: GO:0008897 - holo-[acyl-carrier-protein] synthase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: 4'-phosphopantetheinyl transferase superfamily protein
translation: MGEDVIYAKGTTLLSSAGRWPNDVLLWNVRIPLAASTAWKLLRARLSVNEQQRALRYQHDADRLRFAATRAVLRTLLAKYTGTLPLSLRFSLGAFGRLELAGYQDRLSFNVTHAGQNALIALSNKRCVGVDIECVERVIAWRALLKTVCTTSERNILLRSSPMRGAKGFLRCWTAKEAVLKAFGIGIRYGLQRVSVDPFAPGIQHIKLPVKDKWNSIAVLQLHWIDDLVDYLGCIAFGPIGSVNAHLC
SIO_010081: GKR41_RS00075
subclass of: SO_0000673
so part of: GKR41_RS00075
location: 31752..32498
location: region:31752-32498:1
so has part: feature:31752-32498:1:exon

WP_226809531.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:31752-32498:1:exon

GKR41_RS00080
type: Gene
subclass of: SO_0000704
RO_0002162: 2018052
locus tag: GKR41_RS00080
old locus tag: GKR41_p00019
so part of: sequence
location: 35386..36600
location: region:35386-36600:1
so has part: feature:35386-36600:1:exon
subclass of: SO_0000010

position:35386:1
position: 35386
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:36600:1
position: 36600
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:35386-36600:1:exon

GKR41_RS00080
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2018052
locus tag: GKR41_RS00080
old locus tag: GKR41_p00019
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015603832.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: porin
translation: MKRLALSAISLGVLAVVASAAHAQSSVTLYGTINKSLDCLNNEDTKNQWSIPSGSERGSLWGLSGSEDLSNDVRAVFRLENGFNLNDSLLNRGWQEFGRQAYVGLQNDTYGTLTIGRQNVPDTDLVQNLTAGSYLGAAFATPGDIDNYDNSIRVNHSIKYKSPVLDGLQFESLYAIGNHVKPLDGSYAWGAAIKHTSGPISIAASYQYYNGDKDNKDNKDKKDNKDNKDNKGANNASAALAASTKIISDSIFNSPINSNYISAASLRIARVASQYTIGPVKLGVAYSNAQYMADSSSLFSQTQKFNTGNISAIYQATPSFLTGIGYSYTKGSGNTSSNYSQVSFGANYSLSKRTDVYLIGAWQKATGQQSSGGEKAQAAIGSYGFSSLNNGAQGYVALGLRHKF
SIO_010081: GKR41_RS00080
subclass of: SO_0000673
so part of: GKR41_RS00080
location: 35386..36600
location: region:35386-36600:1
so has part: feature:35386-36600:1:exon

WP_226809532.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:35386-36600:1:exon

GKR41_RS00085
type: Gene
subclass of: SO_0000704
RO_0002162: 2018052
locus tag: GKR41_RS00085
old locus tag: GKR41_p00020
so part of: sequence
location: 38152..39927
location: region:38152-39927:1
so has part: feature:38152-39927:1:exon
subclass of: SO_0000010

position:38152:1
position: 38152
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:39927:1
position: 39927
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:38152-39927:1:exon

GKR41_RS00085
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2018052
locus tag: GKR41_RS00085
old locus tag: GKR41_p00020
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010089790.1
GO component: GO:0016020 - membrane [Evidence IEA]
GO process: GO:0006812 - monoatomic cation transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: cation:proton antiporter
translation: MPHDISLITLIATGLGLAMILGYVSSWLKMPPLVGYLLAGVLCGPGTPGFVGDLALASQLAEIGVMLLMFGVGLHFSLDDLLAVKRIAMPGAIVQIVVATALGMGTAMWWGWPMGVSLVFGLALSVASTVVLLRALEARGQLDSANGRIAIGWLVVEDLVMVLVLVLLPPLSGLLGGSLHNNYIAELTPVNTTMPQPSLWVMVGVTFAKVTSFIVLMLVVGRRVFPRLLFLVARTGSRELFTLCVIVAAVGVAYGSARLFDVSFALGAFFAGMMMRESEFSHRAAAETLPLRDAFSVLFFVSVGMLFDPYVLINAPLHVLGVVAIIMVGKTLAAIVLVLAFRYPLNSALTVGASLAQIGEFSFILAELGISLGLLTKEGQDLILSGSLISIALNSLVFTAIEPAQTWIRSHSSLARQMECREDPLSALPMTVPTADLTGQVVIVGYSRVGRRIAHMLAEHRVSFVVAEQHRDIVEKLRAEKTPAVCGDASDPMVLVQAHVARARILVVTVSDTFNIRKIVDTARILNPSIEAVLCTDNDDEAALLKSEKIGTVFIWDSELARGITSHVLSRMTISMTNSSVPEIRLSTHLE
SIO_010081: GKR41_RS00085
subclass of: SO_0000673
so part of: GKR41_RS00085
location: 38152..39927
location: region:38152-39927:1
so has part: feature:38152-39927:1:exon

WP_226809533.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:38152-39927:1:exon

GKR41_RS00090
type: Gene
subclass of: SO_0000704
RO_0002162: 2018052
gene: glpK
locus tag: GKR41_RS00090
old locus tag: GKR41_p00021
so part of: sequence
location: 42203..43696
location: region:42203-43696:1
so has part: feature:42203-43696:1:exon
subclass of: SO_0000010

position:42203:1
position: 42203
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:43696:1
position: 43696
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:42203-43696:1:exon

GKR41_RS00090
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2018052
gene: glpK
locus tag: GKR41_RS00090
old locus tag: GKR41_p00021
EC number: 2.7.1.30
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007586171.1
GO function: GO:0004370 - glycerol kinase activity [Evidence IEA]
GO process: GO:0006071 - glycerol metabolic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: glycerol kinase GlpK
translation: MAKYILALDQGTASSRAIVFNRAGEVISIAQKEFCQIYPQPGWVEQNPQEIWSTQAGVAVEAVVRAGLNSRSIYALGITNQRETTIIWDRDTGLPIYNAIVWQDRRTAKFCDELKVRGLESAVRAKTGLPIDAYFSATKIRWILDHVDGARMRARQGKYAFGTVDSWLIWNFSHHNMHATDVTNASRTMLFNIHTLDWDDELLDELEIPRSMMPQVMPSSALFGATKTTMFASQIPISGVAGDQHAALFGQMCTTPGMVKNTYGTGCFLIMNTGDKPIESHNNLVTTIAWQIDGKITYALEGSIFIGGAVVQWLRDGLGIIKKAADIEALAKSVPHSDGVFLVPAFTGLGAPHWNPYTRGALFGATQSTSAAHIARAALDSIAHQSFDVLKAMEADAGQRITELRVDGGAVENNLLMQFQSDLLGVDVVRSSVSEATALGAAYLAGLATGCWDSIDEVRDQWKLDRRFTPALESEEVARYRTGWHRAVSAAIMWASA
SIO_010081: GKR41_RS00090
subclass of: SO_0000673
so part of: GKR41_RS00090
location: 42203..43696
location: region:42203-43696:1
so has part: feature:42203-43696:1:exon

WP_226809534.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:42203-43696:1:exon

GKR41_RS00095
type: Gene
subclass of: SO_0000704
RO_0002162: 2018052
locus tag: GKR41_RS00095
old locus tag: GKR41_p00022
so part of: sequence
location: 43718..44431
location: region:43718-44431:1
so has part: feature:43718-44431:1:exon
subclass of: SO_0000010

position:43718:1
position: 43718
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:44431:1
position: 44431
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:43718-44431:1:exon

GKR41_RS00095
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2018052
locus tag: GKR41_RS00095
old locus tag: GKR41_p00022
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013428770.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MIP/aquaporin family protein
translation: MHTNALIAELIGTTLLVLLGDGVVANVILGRMKGYNSGLLVITIGWSMAVFVSVLCSATYSGAHLNPAISVALAVVGKFAWTQVPAYVAAQLLGGMFGAFLVWFIYRQHFELTDCPDTKLAVFCTGSAIRNTLGNLTSEIIATFVLVYAVLHMVAPSVGLGSINALPVALVVLGINVSLGGTTGYAMNPARDLGPRIVHALLPIPGKRDSEWSYAWVPVFGSLIGGILAAVISVYQG
SIO_010081: GKR41_RS00095
subclass of: SO_0000673
so part of: GKR41_RS00095
location: 43718..44431
location: region:43718-44431:1
so has part: feature:43718-44431:1:exon

WP_226809535.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:43718-44431:1:exon

GKR41_RS00100
type: Gene
subclass of: SO_0000704
RO_0002162: 2018052
locus tag: GKR41_RS00100
old locus tag: GKR41_p00023
pseudo: true
so part of: sequence
location: 46654..>47157
location: region:46654-47157:1
so has part: feature:46654-47157:1:exon
subclass of: SO_0000010

position:46654:1
position: 46654
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:47157:1
position: 47157
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:46654-47157:1:exon

GKR41_RS00100
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2018052
locus tag: GKR41_RS00100
old locus tag: GKR41_p00023
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004550412.1
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: flavin reductase family protein
SIO_010081: GKR41_RS00100
subclass of: SO_0000673
so part of: GKR41_RS00100
location: 46654..>47157
location: region:46654-47157:1
so has part: feature:46654-47157:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:46654-47157:1:exon

GKR41_RS00105
type: Gene
subclass of: SO_0000704
RO_0002162: 2018052
gene: argG
locus tag: GKR41_RS00105
old locus tag: GKR41_p00025
so part of: sequence
location: 48159..49481
location: region:48159-49481:1
so has part: feature:48159-49481:1:exon
subclass of: SO_0000010

position:48159:1
position: 48159
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:49481:1
position: 49481
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:48159-49481:1:exon

GKR41_RS00105
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2018052
gene: argG
locus tag: GKR41_RS00105
old locus tag: GKR41_p00025
EC number: 6.3.4.5
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010811197.1
GO function: GO:0004055 - argininosuccinate synthase activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0042803 - protein homodimerization activity [Evidence IEA]
GO process: GO:0006526 - arginine biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: argininosuccinate synthase
translation: MVNILQQLPCNQKVGIAFSGGLDTSAALHWMRIKGAIPYAYTAILGQPDETDYDDIPRRAKQYGAENAKLIDCREQLVMEGFAALQCSAFHISTAGVTYFNTTPLGRAVTGTMLVAAMKEDGVNIWGDGSTFKGNDIERFYRYGLLINPILHIYKPWLDQVFINELGGRAEMSEFISRAGFDYRMSADKAYSTDSNILGATHEAKDLERLDRGVRIIDPIMGVASWRDNMTITREDVTVRFDRGFPVAINSIEFNSNVELLLEANRIGGRHGLGVSDQIENRIIEAKSRGIYEAPGLSLLYIAYERLVTGIHNEDTIEQYRANGRRLGRLLYEGRWFDPQAIMLREASQRWVAHAITGEVTIELRHGNDYSIVNTKSPNLTYKPERLTMERGDLSFSPLDRIGQLTMRNLDITDTRDKLRIYLESGLLNSEGKISLPQFD
SIO_010081: GKR41_RS00105
subclass of: SO_0000673
so part of: GKR41_RS00105
location: 48159..49481
location: region:48159-49481:1
so has part: feature:48159-49481:1:exon

WP_226809536.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:48159-49481:1:exon

GKR41_RS00110
type: Gene
subclass of: SO_0000704
RO_0002162: 2018052
locus tag: GKR41_RS00110
old locus tag: GKR41_p00026
so part of: sequence
location: complement(50524..52047)
location: region:50524-52047:-1
so has part: feature:50524-52047:-1:exon
subclass of: SO_0000010

position:50524:-1
position: 50524
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:52047:-1
position: 52047
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:50524-52047:-1:exon

GKR41_RS00110
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2018052
locus tag: GKR41_RS00110
old locus tag: GKR41_p00026
EC number: 3.6.4.-
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006402617.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DEAD/DEAH box helicase
translation: MNNNTLLYSNNFAALGLSTEIVSTLIAVGYQAPMPVQQHAIPAALAGYDLLVSSPTGSGKTAAFMLPAIERFAQMQKAGTLGQRASYPVHQMQRSDRDRGSRRHTREQSIAKPALLVLTPTRELAMQVTTAATTYGKHLRRLHTVSILGGVPYGQQLMLLAKNPEILVATPGRLIDHLEHRRIDLSQLKMLVLDEADRMLDMGFIEDIETIINHTPITRQTLLFSATLDGKVGSLAQRFLSNAKRIEIGHEPESRANIAQSIHYVDDRAHKDRLLTHLLADSALDQAIVFTATKNNADLISAKLSEDGFASAALHGDLPQGARNRTIRALRERRVRVLVATDVAARGIDVPGITHVFNYDLPKFVEDYVHRIGRTGRAGRSGIAISLVHHAEIGILKRIERFVRTPLPISVIAGFEPKRTPSTHTLARRSNPTRSHGRGTSVYQGRGINKGYGNPRNSSGGNSRESGYRKASGDALIINNRRRTSFSDLRSSARYRADDRRTSRHDD
SIO_010081: GKR41_RS00110
subclass of: SO_0000673
so part of: GKR41_RS00110
location: complement(50524..52047)
location: region:50524-52047:-1
so has part: feature:50524-52047:-1:exon

WP_226809537.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:50524-52047:-1:exon

GKR41_RS00115
type: Gene
subclass of: SO_0000704
RO_0002162: 2018052
locus tag: GKR41_RS00115
so part of: sequence
location: 52369..52506
location: region:52369-52506:1
so has part: feature:52369-52506:1:exon
subclass of: SO_0000010

position:52369:1
position: 52369
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:52506:1
position: 52506
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:52369-52506:1:exon

GKR41_RS00115
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2018052
locus tag: GKR41_RS00115
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNDTCSSDRKTGMARKMRADVRTCGRADRLARNREPFWVYKRTQI
SIO_010081: GKR41_RS00115
subclass of: SO_0000673
so part of: GKR41_RS00115
location: 52369..52506
location: region:52369-52506:1
so has part: feature:52369-52506:1:exon

WP_226809538.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:52369-52506:1:exon

GKR41_RS00120
type: Gene
subclass of: SO_0000704
RO_0002162: 2018052
gene: tsaB
locus tag: GKR41_RS00120
old locus tag: GKR41_p00028
so part of: sequence
location: 53007..53717
location: region:53007-53717:1
so has part: feature:53007-53717:1:exon
subclass of: SO_0000010

position:53007:1
position: 53007
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:53717:1
position: 53717
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:53007-53717:1:exon

GKR41_RS00120
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2018052
gene: tsaB
locus tag: GKR41_RS00120
old locus tag: GKR41_p00028
EC number: 2.3.1.234
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014896708.1
GO function: GO:0003725 - double-stranded RNA binding [Evidence IEA]
GO process: GO:0006400 - tRNA modification [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB
translation: MSQVLLALDTSTDFCSVAVFYFPRAASSPCVISRHDRTGPVSSERALPAICEVLEEAKLTLDDCSAVAFGTGPGSFTGLRTAAGVAQGLAFGLNIPVVPVSTLLACAERARFSDPDIRRVLVAIDARMGGVYWADFAWDNTLEDWRVHHSAALSPPTCVLVPDEPFTLAGNASSVFGDMLPAVTRASVIDTLAMPHAHALSLVGWCSFIAGRTLPAHLAVPEYVRDKVALTTRERA
SIO_010081: GKR41_RS00120
subclass of: SO_0000673
so part of: GKR41_RS00120
location: 53007..53717
location: region:53007-53717:1
so has part: feature:53007-53717:1:exon

WP_226809539.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:53007-53717:1:exon

GKR41_RS00125
type: Gene
subclass of: SO_0000704
RO_0002162: 2018052
gene: rimI
locus tag: GKR41_RS00125
old locus tag: GKR41_p00029
so part of: sequence
location: 53780..54304
location: region:53780-54304:1
so has part: feature:53780-54304:1:exon
subclass of: SO_0000010

position:53780:1
position: 53780
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:54304:1
position: 54304
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:53780-54304:1:exon

GKR41_RS00125
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2018052
gene: rimI
locus tag: GKR41_RS00125
old locus tag: GKR41_p00029
EC number: 2.3.1.266
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018417621.1
GO function: GO:0008999 - peptide-alanine-alpha-N-acetyltransferase activity [Evidence IEA]
GO process: GO:0036211 - protein modification process [Evidence IEA]; GO:0042254 - ribosome biogenesis [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ribosomal protein S18-alanine N-acetyltransferase
translation: MTLCYLELMTDSDLDKVVAIERNVYDFPWTRSDFEDSLRNNQLGLCLRKATGMLVGYCVLMLSVDEMHLLNLCVTPSAQGQGSGLTLLCESVRIMRMQQLRCMLLEVRQSNWRAMRLYNHFGFIKIGKRKNYYAERHSGREDAIVMRYRVHSEMLIKPPVTIIRHDSIAKYRFL
SIO_010081: GKR41_RS00125
subclass of: SO_0000673
so part of: GKR41_RS00125
location: 53780..54304
location: region:53780-54304:1
so has part: feature:53780-54304:1:exon

WP_226809540.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:53780-54304:1:exon

GKR41_RS00130
type: Gene
subclass of: SO_0000704
RO_0002162: 2018052
locus tag: GKR41_RS00130
old locus tag: GKR41_p00030
so part of: sequence
location: 54399..55391
location: region:54399-55391:1
so has part: feature:54399-55391:1:exon
subclass of: SO_0000010

position:54399:1
position: 54399
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:55391:1
position: 55391
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:54399-55391:1:exon

GKR41_RS00130
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2018052
locus tag: GKR41_RS00130
old locus tag: GKR41_p00030
EC number: 3.2.2.27
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013428674.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: uracil-DNA glycosylase
translation: MAQLNMILEELGITSLWVFRDSRNTRIQVNHRLINDLRSKSNILTLKDSLTGQSSKACKATKVSGVIESINTPDKVKNVVKVLNAPRELATPIISARNALVGLQSAYSLSQTAMSKRNSMAIGSTLEAVSGVEPVQPVSILDWEALKTRVAGCMLCRLCERRTNTVFGVGDETADWMLVGEAPGELEDKQGKPFVGQSGRLLDNMLRALQLLRGDNLYIANVLKCRPPGNRNPELQEVMQCEPYLKRQVSLLKPKVIIALGRFAAYSLLKTNADMTSLRGRIHKYEDVPVIVTYHPAYLLRSLEDKHKAWSDLCLARAVYRKHSTMYESL
SIO_010081: GKR41_RS00130
subclass of: SO_0000673
so part of: GKR41_RS00130
location: 54399..55391
location: region:54399-55391:1
so has part: feature:54399-55391:1:exon

WP_226809541.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:54399-55391:1:exon

GKR41_RS00135
type: Gene
subclass of: SO_0000704
RO_0002162: 2018052
gene: thiD
locus tag: GKR41_RS00135
old locus tag: GKR41_p00031
pseudo: true
so part of: sequence
location: complement(55583..56364)
location: region:55583-56364:-1
so has part: feature:55583-56364:-1:exon
subclass of: SO_0000010

position:55583:-1
position: 55583
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:56364:-1
position: 56364
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:55583-56364:-1:exon

GKR41_RS00135
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2018052
gene: thiD
locus tag: GKR41_RS00135
old locus tag: GKR41_p00031
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012698105.1
GO function: GO:0008902 - hydroxymethylpyrimidine kinase activity [Evidence IEA]; GO:0008972 - phosphomethylpyrimidine kinase activity [Evidence IEA]
GO process: GO:0009228 - thiamine biosynthetic process [Evidence IEA]
note: frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase
SIO_010081: GKR41_RS00135
subclass of: SO_0000673
so part of: GKR41_RS00135
location: complement(55583..56364)
location: region:55583-56364:-1
so has part: feature:55583-56364:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:55583-56364:-1:exon

GKR41_RS00140
type: Gene
subclass of: SO_0000704
RO_0002162: 2018052
gene: alr
locus tag: GKR41_RS00140
old locus tag: GKR41_p00033
so part of: sequence
location: 57212..58282
location: region:57212-58282:1
so has part: feature:57212-58282:1:exon
subclass of: SO_0000010

position:57212:1
position: 57212
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:58282:1
position: 58282
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:57212-58282:1:exon

GKR41_RS00140
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2018052
gene: alr
locus tag: GKR41_RS00140
old locus tag: GKR41_p00033
EC number: 5.1.1.1
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017331722.1
GO function: GO:0008784 - alanine racemase activity [Evidence IEA]
GO process: GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: alanine racemase
translation: MPRPLLATIHTTALSNNLAVARGYASKSKIWAVVKANAYGHGLERVFPSLRSTDGFALLELEDAVKLRKLGWAGPILLLEGAGCSIDIDTIDHYGLITTVHCDEQLRMLETARLSKPINIYLKMNSGMNRLGYVASKYYAAWKRARVCSGIGQITLMTHFSNAEGEGSVRRQLEIFKYGSHGIEGARSLSNSAATLWHSYANFDWVRPGIMLYGASPSSVLASIQGSGLQPAMTLSSELIAIQTVEPGEGVGYGSIFKARERMRIGVVACGYADGYPRCAPEGTPVLVNGVCTRIVGRVSMDMLTVDLSLCPNSAIGSSVELWGNNIPIDTVAVACGTVGYELMCAIAQRVQVCVE
SIO_010081: GKR41_RS00140
subclass of: SO_0000673
so part of: GKR41_RS00140
location: 57212..58282
location: region:57212-58282:1
so has part: feature:57212-58282:1:exon

WP_226809542.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:57212-58282:1:exon

GKR41_RS00145
type: Gene
subclass of: SO_0000704
RO_0002162: 2018052
locus tag: GKR41_RS00145
old locus tag: GKR41_p00034
so part of: sequence
location: complement(59622..59876)
location: region:59622-59876:-1
so has part: feature:59622-59876:-1:exon
subclass of: SO_0000010

position:59622:-1
position: 59622
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:59876:-1
position: 59876
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:59622-59876:-1:exon

GKR41_RS00145
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2018052
locus tag: GKR41_RS00145
old locus tag: GKR41_p00034
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008922001.1
GO function: GO:0005506 - iron ion binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: oxidative damage protection protein
translation: MTRMVYCVKLGKEAVGLDFPPLPGEIGKRIFSCISKEIWQAWLKQQTMLINENRLNMIDPHARQYLLKQAKKFLFSEDSDIVSG
SIO_010081: GKR41_RS00145
subclass of: SO_0000673
so part of: GKR41_RS00145
location: complement(59622..59876)
location: region:59622-59876:-1
so has part: feature:59622-59876:-1:exon

WP_226809543.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:59622-59876:-1:exon

GKR41_RS00150
type: Gene
subclass of: SO_0000704
RO_0002162: 2018052
locus tag: GKR41_RS00150
old locus tag: GKR41_p00035
so part of: sequence
location: 60603..60824
location: region:60603-60824:1
so has part: feature:60603-60824:1:exon
subclass of: SO_0000010

position:60603:1
position: 60603
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:60824:1
position: 60824
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:60603-60824:1:exon

GKR41_RS00150
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2018052
locus tag: GKR41_RS00150
old locus tag: GKR41_p00035
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKISLLARRVAEYDAIYSIDKLMLCLSVGIRSAIATQFYPPPPKRGEGDKLGIDLRTTLVYRRYSLVSAPALL
SIO_010081: GKR41_RS00150
subclass of: SO_0000673
so part of: GKR41_RS00150
location: 60603..60824
location: region:60603-60824:1
so has part: feature:60603-60824:1:exon

WP_226809544.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:60603-60824:1:exon