Brachybacterium avium strain VR2415 plasmid unnamed1.
Bacteria; Actinomycetota; Actinomycetes; Micrococcales; Dermabacteraceae; Brachybacterium.
Submitted (04-JUL-2017) Department of Biology, Kyung Hee University, 1 Hoegi-dong, Dongdaemun-gu, Seoul 02447, Korea, Republic of
REFSEQ INFORMATION: The reference sequence is identical to\nCP022317.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: RS HGAP Assembly v. 3.0\nExpected Final Version :: yes\nGenome Coverage :: 323.0x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/08/2023 09:27:52\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,289\nCDSs (total) :: 3,225\nGenes (coding) :: 3,092\nCDSs (with protein) :: 3,092\nGenes (RNA) :: 64\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 52\nncRNAs :: 3\nPseudo Genes (total) :: 133\nCDSs (without protein) :: 133\nPseudo Genes (ambiguous residues) :: 0 of 133\nPseudo Genes (frameshifted) :: 114 of 133\nPseudo Genes (incomplete) :: 20 of 133\nPseudo Genes (internal stop) :: 2 of 133\nPseudo Genes (multiple problems) :: 2 of 133\n##Genome-Annotation-Data-END##
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_007805245.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013883705.1
COORDINATES: similar to AA sequence:RefSeq:WP_002520147.1
GO:0004190 - aspartic-type endopeptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017822862.1
COORDINATES: similar to AA sequence:RefSeq:WP_013603111.1
COORDINATES: similar to AA sequence:RefSeq:WP_015775704.1
COORDINATES: similar to AA sequence:RefSeq:WP_018778999.1
COORDINATES: similar to AA sequence:RefSeq:WP_019311171.1
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_005053852.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019311173.1
COORDINATES: similar to AA sequence:RefSeq:WP_012397797.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013732969.1
COORDINATES: protein motif:HMM:NF013630.2
LysM peptidoglycan-binding domain-containing protein
COORDINATES: protein motif:HMM:NF019428.2
TadE/TadG family type IV pilus assembly protein
COORDINATES: similar to AA sequence:RefSeq:WP_018505000.1
type II secretion system F family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008359818.1
COORDINATES: protein motif:HMM:NF012652.2
COORDINATES: protein motif:HMM:NF024544.2
COORDINATES: protein motif:HMM:NF018691.2
COORDINATES: protein motif:HMM:NF024056.2
COORDINATES: protein motif:HMM:NF024254.2
COORDINATES: protein motif:HMM:NF013727.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF013122.2
GO:0004527 - exonuclease activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF019151.2
COORDINATES: similar to AA sequence:RefSeq:WP_013814221.1
COORDINATES: similar to AA sequence:RefSeq:WP_016666347.1
COORDINATES: protein motif:HMM:NF014941.2
COORDINATES: similar to AA sequence:RefSeq:WP_015969836.1
COORDINATES: protein motif:HMM:NF023505.2