Thermobispora bispora strain ZC4 plasmid unnamed, complete sequence.
Bacteria; Actinomycetota; Actinomycetes; Streptosporangiales; Streptosporangiaceae; Thermobispora.
Submitted (08-APR-2019) Bioquimica, Instituto de Quimica, Av. Prof. Lineu Prestes, 748, Sao Paulo, SP 05508-000, Brazil
REFSEQ INFORMATION: The reference sequence is identical to\nCP039125.1.\nBacteria and source DNA available from Prof. Ronaldo Quaggio,\nInstituto de Quimica - Universidade de Sao Paulo.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: JUL-2018\nAssembly Method :: MaSuRCA v. 3.2.6\nAssembly Name :: R30\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 36.0x\nSequencing Technology :: Illumina MiSeq; Oxford Nanopore MiniION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/30/2023 04:50:27\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,807\nCDSs (total) :: 3,740\nGenes (coding) :: 3,712\nCDSs (with protein) :: 3,712\nGenes (RNA) :: 67\nrRNAs :: 3, 4, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 4, 3 (5S, 16S, 23S)\ntRNAs :: 54\nncRNAs :: 3\nPseudo Genes (total) :: 28\nCDSs (without protein) :: 28\nPseudo Genes (ambiguous residues) :: 0 of 28\nPseudo Genes (frameshifted) :: 1 of 28\nPseudo Genes (incomplete) :: 26 of 28\nPseudo Genes (internal stop) :: 2 of 28\nPseudo Genes (multiple problems) :: 1 of 28\nCRISPR Arrays :: 4\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
ZC4 compost from a compost operation of Sao Paulo Zoo
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_012890717.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_016906055.1
GO:0008829 - dCTP deaminase activity [Evidence IEA]
GO:0009394 - 2'-deoxyribonucleotide metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018851170.1
helix-turn-helix transcriptional regulator
COORDINATES: protein motif:HMM:NF020354.2
COORDINATES: protein motif:HMM:NF016732.2
COORDINATES: protein motif:HMM:NF016471.2
COORDINATES: protein motif:HMM:NF022716.2
COORDINATES: similar to AA sequence:RefSeq:WP_014057787.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008739592.1
COORDINATES: similar to AA sequence:RefSeq:WP_019075547.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF016923.2
GO:0044423 - virion component [Evidence IEA]
GO:0005198 - structural molecule activity [Evidence IEA]
GO:0019068 - virion assembly [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018503003.1
COORDINATES: protein motif:HMM:NF025033.2
methyltransferase domain-containing protein
COORDINATES: protein motif:HMM:NF012774.2
COORDINATES: protein motif:HMM:NF024776.2
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF024642.2
COORDINATES: protein motif:HMM:NF013793.2
COORDINATES: similar to AA sequence:RefSeq:WP_013132346.1
COORDINATES: protein motif:HMM:NF012610.2
COORDINATES: similar to AA sequence:RefSeq:WP_019548457.1
COORDINATES: similar to AA sequence:RefSeq:WP_018807021.1
COORDINATES: similar to AA sequence:RefSeq:WP_013131935.1
GO:0050797 - thymidylate synthase (FAD) activity [Evidence IEA]
GO:0009265 - 2'-deoxyribonucleotide biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003965255.1
COORDINATES: similar to AA sequence:RefSeq:WP_009076966.1
COORDINATES: similar to AA sequence:RefSeq:WP_013130272.1
GO:0009360 - DNA polymerase III complex [Evidence IEA]
GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
COORDINATES: protein motif:HMM:NF025107.2
COORDINATES: similar to AA sequence:RefSeq:WP_018809971.1
winged helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF012271.2
GO:0005515 - protein binding [Evidence IEA]
fibronectin type III domain-containing protein
COORDINATES: protein motif:HMM:NF013411.2
COORDINATES: similar to AA sequence:RefSeq:WP_012299196.1
COORDINATES: protein motif:HMM:NF013661.2
COORDINATES: protein motif:HMM:NF016550.2
COORDINATES: protein motif:HMM:NF013124.2
BTAD domain-containing putative transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_011873006.1
RNA-guided endonuclease TnpB family protein