Enterococcus wangshanyuanii strain MN05 plasmid unnamed3.
Bacteria; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus.
Enterococcus wangshanyuanii sp. nov., isolated from faeces of yaks (Bos grunniens)
Submitted (30-MAY-2017) National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention, No. 155, Changbai Road, Changping, Beijing 102206, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP021876.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. 2016\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 200.0x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/06/2023 06:30:24\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,214\nCDSs (total) :: 4,138\nGenes (coding) :: 4,106\nCDSs (with protein) :: 4,106\nGenes (RNA) :: 76\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 60\nncRNAs :: 4\nPseudo Genes (total) :: 32\nCDSs (without protein) :: 32\nPseudo Genes (ambiguous residues) :: 0 of 32\nPseudo Genes (frameshifted) :: 9 of 32\nPseudo Genes (incomplete) :: 16 of 32\nPseudo Genes (internal stop) :: 11 of 32\nPseudo Genes (multiple problems) :: 3 of 32\n##Genome-Annotation-Data-END##
type strain of Enterococcus wangshanyuanii
COORDINATES: protein motif:HMM:NF018683.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_016619252.1
COORDINATES: protein motif:HMM:NF040423.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_002405563.1
COORDINATES: similar to AA sequence:RefSeq:WP_086558233.1
GO:0004803 - transposase activity [Evidence IEA]
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010779029.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004519 - endonuclease activity [Evidence IEA]
GO:0009307 - DNA restriction-modification system [Evidence IEA]
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014862528.1
COORDINATES: similar to AA sequence:RefSeq:WP_002394804.1
COORDINATES: protein motif:HMM:NF013793.2
COORDINATES: similar to AA sequence:RefSeq:WP_002412982.1
primase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_016615322.1
COORDINATES: protein motif:HMM:NF012706.2
peptide ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_002387932.1
COORDINATES: similar to AA sequence:RefSeq:WP_009442130.1
COORDINATES: protein motif:HMM:NF013540.2
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_002385596.1
COORDINATES: similar to AA sequence:RefSeq:WP_002381292.1
COORDINATES: protein motif:HMM:NF037639.2
SpaA isopeptide-forming pilin-related protein
COORDINATES: protein motif:HMM:NF021166.2
COORDINATES: protein motif:HMM:NF013954.2
GO:0004040 - amidase activity [Evidence IEA]
glucosaminidase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_002362292.1
GO:0003964 - RNA-directed DNA polymerase activity [Evidence IEA]
GO:0000373 - Group II intron splicing [Evidence IEA]
group II intron reverse transcriptase/maturase
COORDINATES: similar to AA sequence:RefSeq:WP_016617854.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:TIGR01167.1
GO:0009986 - cell surface [Evidence IEA]
LPXTG cell wall anchor domain-containing protein
COORDINATES: protein motif:HMM:NF039331.1
COORDINATES: similar to AA sequence:RefSeq:WP_002363593.1
COORDINATES: protein motif:HMM:NF019192.2
COORDINATES: similar to AA sequence:RefSeq:WP_002363597.1
TraM recognition domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_002396555.1
COORDINATES: similar to AA sequence:RefSeq:WP_002363600.1
COORDINATES: similar to AA sequence:RefSeq:WP_002396556.1
COORDINATES: similar to AA sequence:RefSeq:WP_002363602.1
COORDINATES: similar to AA sequence:RefSeq:WP_002396558.1
bifunctional lytic transglycosylase/C40 family peptidase
COORDINATES: protein motif:HMM:NF033608.1
type I toxin-antitoxin system Fst family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_002396560.1
COORDINATES: similar to AA sequence:RefSeq:WP_002396563.1
COORDINATES: similar to AA sequence:RefSeq:WP_011054698.1
COORDINATES: protein motif:HMM:NF025642.2
COORDINATES: similar to AA sequence:RefSeq:WP_002396565.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002363615.1
COORDINATES: similar to AA sequence:RefSeq:WP_016618880.1
COORDINATES: similar to AA sequence:RefSeq:WP_002389688.1
GO:0003697 - single-stranded DNA binding [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]; GO:0006260 - DNA replication [Evidence IEA]; GO:0006351 - DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010766560.1
COORDINATES: similar to AA sequence:RefSeq:WP_016627315.1
COORDINATES: similar to AA sequence:RefSeq:WP_002300090.1
COORDINATES: similar to AA sequence:RefSeq:WP_002300091.1
COORDINATES: similar to AA sequence:RefSeq:WP_002300092.1
COORDINATES: protein motif:HMM:NF014626.2
GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO:0018142 - protein-DNA covalent cross-linking [Evidence IEA]
SOS response-associated peptidase family protein
COORDINATES: protein motif:HMM:NF024525.2
COORDINATES: similar to AA sequence:RefSeq:WP_010766300.1
TIGR04197 family type VII secretion effector
COORDINATES: protein motif:HMM:NF033516.0
COORDINATES: protein motif:HMM:NF024908.2
COORDINATES: protein motif:HMM:NF028245.2
COORDINATES: protein motif:HMM:NF037888.2
COORDINATES: similar to AA sequence:RefSeq:WP_010747540.1
COORDINATES: similar to AA sequence:RefSeq:WP_010821245.1
COORDINATES: similar to AA sequence:RefSeq:WP_016622858.1
COORDINATES: similar to AA sequence:RefSeq:WP_001053446.1
COORDINATES: similar to AA sequence:RefSeq:WP_016180804.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003331415.1
COORDINATES: similar to AA sequence:RefSeq:WP_016619388.1
COORDINATES: protein motif:HMM:NF018676.2
COORDINATES: protein motif:HMM:NF025108.2
COORDINATES: protein motif:HMM:NF015347.2
BspA family leucine-rich repeat surface protein
COORDINATES: protein motif:HMM:NF023225.2
DUF916 and DUF3324 domain-containing protein
COORDINATES: protein motif:HMM:NF024702.2
COORDINATES: similar to AA sequence:RefSeq:WP_010770870.1
COORDINATES: protein motif:HMM:TIGR04090.1
BsaA family SipW-dependent biofilm matrix protein
COORDINATES: similar to AA sequence:RefSeq:WP_010770867.1
COORDINATES: similar to AA sequence:RefSeq:WP_010763542.1
COORDINATES: similar to AA sequence:RefSeq:WP_010763541.1
GO:0004252 - serine-type endopeptidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012698.2
winged helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017153768.1
effector binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010761789.1
COORDINATES: protein motif:HMM:NF016901.2
COORDINATES: similar to AA sequence:RefSeq:WP_014092604.1
COORDINATES: similar to AA sequence:RefSeq:WP_010773239.1
COORDINATES: protein motif:HMM:NF037833.2
COORDINATES: protein motif:HMM:NF039639.1
COORDINATES: protein motif:HMM:NF021028.2
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: protein motif:HMM:NF014437.2
GO:0008982 - protein-N(PI)-phosphohistidine-sugar phosphotransferase activity [Evidence IEA]
GO:0009401 - phosphoenolpyruvate-dependent sugar phosphotransferase system [Evidence IEA]
COORDINATES: protein motif:HMM:NF018196.2
COORDINATES: protein motif:HMM:NF017206.2
COORDINATES: similar to AA sequence:RefSeq:WP_002573845.1
COORDINATES: similar to AA sequence:RefSeq:WP_014325164.1
COORDINATES: similar to AA sequence:RefSeq:WP_010764834.1
COORDINATES: similar to AA sequence:RefSeq:WP_010765767.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
sigma-70 family RNA polymerase sigma factor
COORDINATES: protein motif:HMM:NF019542.2
COORDINATES: similar to AA sequence:RefSeq:WP_010768449.1
COORDINATES: similar to AA sequence:RefSeq:WP_002393723.1
COORDINATES: similar to AA sequence:RefSeq:WP_002320842.1
COORDINATES: similar to AA sequence:RefSeq:WP_003330916.1
HNH endonuclease signature motif containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_016634632.1
COORDINATES: similar to AA sequence:RefSeq:WP_015979968.1
COORDINATES: similar to AA sequence:RefSeq:WP_002296237.1
COORDINATES: protein motif:HMM:NF025085.2
COORDINATES: similar to AA sequence:RefSeq:WP_016617093.1
COORDINATES: protein motif:HMM:NF016617.2
COORDINATES: protein motif:HMM:NF012870.2
GO:0015074 - DNA integration [Evidence IEA]
DDE-type integrase/transposase/recombinase
COORDINATES: similar to AA sequence:RefSeq:WP_010823295.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.