Acinetobacter chinensis strain WCHAc010005 plasmid pOXA58_010005, complete sequence.
Bacteria; Proteobacteria; Gammaproteobacteria; Moraxellales; Moraxellaceae; Acinetobacter.
The complete genome of Acinetobacter sp. strain WCHAc010005
Submitted (03-SEP-2018) Center of Infectious Diseases, West China Hospital, Sichuan University, Guoxuexiang 37, Chengdu, Sichuan 610041, China
Submitted (18-MAY-2017) Center of Infectious Diseases, West China Hospital, Sichuan University, Guoxuexiang 37, Chengdu, Sichuan 610041, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP032133.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Unicycler v. 0.4.6\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 200.0x\nSequencing Technology :: Illumina HiSeq; MinION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 11/06/2022 02:53:18\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 3,604\nCDSs (total) :: 3,496\nGenes (coding) :: 3,442\nCDSs (with protein) :: 3,442\nGenes (RNA) :: 108\nrRNAs :: 7, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 7, 7, 7 (5S, 16S, 23S)\ntRNAs :: 83\nncRNAs :: 4\nPseudo Genes (total) :: 54\nCDSs (without protein) :: 54\nPseudo Genes (ambiguous residues) :: 0 of 54\nPseudo Genes (frameshifted) :: 13 of 54\nPseudo Genes (incomplete) :: 40 of 54\nPseudo Genes (internal stop) :: 10 of 54\nPseudo Genes (multiple problems) :: 9 of 54\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_005404746.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_020753591.1
COORDINATES: similar to AA sequence:RefSeq:WP_019384229.1
COORDINATES: similar to AA sequence:RefSeq:WP_001085468.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_000158575.1
COORDINATES: similar to AA sequence:RefSeq:WP_013418120.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_000742756.1
GO:0004803 - transposase activity [Evidence IEA]
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017399339.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_076612089.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: nucleotide motif:Rfam:14.4:RF01497
AL1L pseudoknot; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_004977494.1
translesion error-prone DNA polymerase V autoproteolytic subunit
COORDINATES: similar to AA sequence:RefSeq:WP_007484313.1
COORDINATES: similar to AA sequence:RefSeq:YP_004994754.1
GO:0009318 - exodeoxyribonuclease VII complex [Evidence IEA]
GO:0008855 - exodeoxyribonuclease VII activity [Evidence IEA]
GO:0006308 - DNA catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005243573.1
COORDINATES: similar to AA sequence:RefSeq:WP_042893601.1
IS6-like element IS1008 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_004889724.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004647749.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_004647750.1
putative addiction module antidote protein
COORDINATES: similar to AA sequence:RefSeq:WP_076611903.1
COORDINATES: similar to AA sequence:RefSeq:WP_005091750.1
COORDINATES: similar to AA sequence:RefSeq:WP_005086328.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611607.1
COORDINATES: similar to AA sequence:RefSeq:WP_000422636.1
aminoglycoside O-phosphotransferase APH(3')-VIa
COORDINATES: protein motif:HMM:NF013933.2
GO:0006865 - amino acid transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF024242.2
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_032072965.1
IS3-like element ISAba14 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_076611585.1
IS3-like element ISAba20 family transposase
COORDINATES: protein motif:HMM:NF014376.2
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
AraC family ligand binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015586042.1
COORDINATES: similar to AA sequence:RefSeq:WP_002002480.1
carbapenem-hydrolyzing class D beta-lactamase OXA-58
IS1-like element ISAba3 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_005009903.1
efflux system response regulator transcription factor AdeR
COORDINATES: similar to AA sequence:RefSeq:WP_020752725.1
two-component sensor histidine kinase AdeS
COORDINATES: similar to AA sequence:RefSeq:WP_020752726.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005009897.1
GO:0015562 - efflux transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]; GO:0042908 - xenobiotic transport [Evidence IEA]
multidrug efflux RND transporter permease subunit
COORDINATES: similar to AA sequence:RefSeq:WP_004946882.1
GO:0005215 - transporter activity [Evidence IEA]
efflux RND transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_004807289.1
COORDINATES: similar to AA sequence:RefSeq:WP_016540216.1
COORDINATES: similar to AA sequence:RefSeq:WP_004282172.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611394.1
COORDINATES: similar to AA sequence:RefSeq:WP_024160909.1
CmlA/FloR family chloramphenicol efflux MFS transporter
COORDINATES: similar to AA sequence:RefSeq:WP_076611467.1
internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS3-like element ISAba19 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_012367382.1
GO:0016779 - nucleotidyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000100572.1
COORDINATES: similar to AA sequence:RefSeq:WP_017355006.1
COORDINATES: similar to AA sequence:RefSeq:WP_001286625.1
COORDINATES: similar to AA sequence:RefSeq:WP_004811060.1
GO:0005575 - cellular_component [Evidence IEA]
GO:0003674 - molecular_function [Evidence IEA]
GO:0008150 - biological_process [Evidence IEA]
protease Lon-related BREX system protein BrxL
COORDINATES: similar to AA sequence:RefSeq:WP_014702729.1
Tn3-like element ISKox2 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_000971921.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS1182-like element ISCfr1 family transposase
COORDINATES: similar to AA sequence:RefSeq:YP_005221028.1
COORDINATES: similar to AA sequence:RefSeq:YP_005221027.1
COORDINATES: similar to AA sequence:RefSeq:YP_005221025.1
COORDINATES: similar to AA sequence:RefSeq:WP_000557454.1
aminoglycoside N-acetyltransferase AAC(3)-IId
COORDINATES: similar to AA sequence:RefSeq:WP_000755724.1
COORDINATES: similar to AA sequence:RefSeq:WP_004761052.1
HNH endonuclease signature motif containing protein