Acinetobacter chinensis strain WCHAc010005 plasmid pNDM1_010005, complete sequence.
Bacteria; Proteobacteria; Gammaproteobacteria; Moraxellales; Moraxellaceae; Acinetobacter.
The complete genome of Acinetobacter sp. strain WCHAc010005
Submitted (03-SEP-2018) Center of Infectious Diseases, West China Hospital, Sichuan University, Guoxuexiang 37, Chengdu, Sichuan 610041, China
Submitted (18-MAY-2017) Center of Infectious Diseases, West China Hospital, Sichuan University, Guoxuexiang 37, Chengdu, Sichuan 610041, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP032132.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Unicycler v. 0.4.6\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 200.0x\nSequencing Technology :: Illumina HiSeq; MinION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 11/06/2022 02:53:18\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 3,604\nCDSs (total) :: 3,496\nGenes (coding) :: 3,442\nCDSs (with protein) :: 3,442\nGenes (RNA) :: 108\nrRNAs :: 7, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 7, 7, 7 (5S, 16S, 23S)\ntRNAs :: 83\nncRNAs :: 4\nPseudo Genes (total) :: 54\nCDSs (without protein) :: 54\nPseudo Genes (ambiguous residues) :: 0 of 54\nPseudo Genes (frameshifted) :: 13 of 54\nPseudo Genes (incomplete) :: 40 of 54\nPseudo Genes (internal stop) :: 10 of 54\nPseudo Genes (multiple problems) :: 9 of 54\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_015060710.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
type IV secretion system DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_005108924.1
lytic transglycosylase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_005404871.1
COORDINATES: similar to AA sequence:RefSeq:WP_005108926.1
COORDINATES: similar to AA sequence:RefSeq:WP_015060713.1
GO:0043684 - type IV secretion system complex [Evidence IEA]
GO:0044097 - secretion by the type IV secretion system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005108928.1
COORDINATES: similar to AA sequence:RefSeq:WP_005108929.1
TrbG/VirB9 family P-type conjugative transfer protein
COORDINATES: similar to AA sequence:RefSeq:WP_005000436.1
COORDINATES: similar to AA sequence:RefSeq:WP_005108931.1
COORDINATES: similar to AA sequence:RefSeq:WP_005000439.1
COORDINATES: similar to AA sequence:RefSeq:WP_005000442.1
COORDINATES: similar to AA sequence:RefSeq:WP_005000443.1
COORDINATES: similar to AA sequence:RefSeq:WP_005000446.1
COORDINATES: similar to AA sequence:RefSeq:WP_005000449.1
COORDINATES: similar to AA sequence:RefSeq:WP_005000195.1
COORDINATES: similar to AA sequence:RefSeq:WP_005000193.1
COORDINATES: similar to AA sequence:RefSeq:WP_005000189.1
COORDINATES: similar to AA sequence:RefSeq:WP_017480466.1
COORDINATES: similar to AA sequence:RefSeq:WP_015060716.1
COORDINATES: protein motif:HMM:NF023505.2
COORDINATES: similar to AA sequence:RefSeq:WP_032072965.1
GO:0004803 - transposase activity [Evidence IEA]
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS3-like element ISAba14 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_000422636.1
APH(3')-VI family aminoglycoside O-phosphotransferase
COORDINATES: similar to AA sequence:RefSeq:WP_076611607.1
COORDINATES: similar to AA sequence:RefSeq:WP_032492661.1
subclass B1 metallo-beta-lactamase NDM-1
COORDINATES: similar to AA sequence:RefSeq:WP_004201167.1
COORDINATES: similar to AA sequence:RefSeq:WP_004201168.1
GO:0004640 - phosphoribosylanthranilate isomerase activity [Evidence IEA]
GO:0000162 - tryptophan biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006399920.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
twin-arginine translocation (TAT) pathway signal sequence domain protein
COORDINATES: protein motif:HMM:NF022853.2
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
protein-disulfide reductase DsbD family protein
COORDINATES: similar to AA sequence:RefSeq:WP_004201171.1
COORDINATES: similar to AA sequence:RefSeq:WP_013534102.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
GO:0006457 - protein folding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005411226.1
GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_001137772.1
COORDINATES: similar to AA sequence:RefSeq:WP_004761801.1
COORDINATES: similar to AA sequence:RefSeq:WP_004993315.1
COORDINATES: similar to AA sequence:RefSeq:WP_004993314.1
COORDINATES: similar to AA sequence:RefSeq:WP_015060705.1
COORDINATES: similar to AA sequence:RefSeq:WP_004993309.1
COORDINATES: similar to AA sequence:RefSeq:WP_015060707.1
COORDINATES: similar to AA sequence:RefSeq:WP_004999358.1
COORDINATES: similar to AA sequence:RefSeq:WP_005108919.1
COORDINATES: similar to AA sequence:RefSeq:WP_017480461.1
COORDINATES: similar to AA sequence:RefSeq:WP_005108921.1
COORDINATES: similar to AA sequence:RefSeq:WP_005108922.1