Acinetobacter chinensis strain WCHAc010005 plasmid p3_010005, complete sequence.
type: Entry
definition: Acinetobacter chinensis strain WCHAc010005 plasmid p3_010005, complete sequence.
sequence version: NZ_CP032129.1
sequence date: 2022-11-06
sequence: sequence
division: CON
label: NZ_CP032129.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN07138949
keyword: RefSeq
source: Acinetobacter chinensis
organism: Acinetobacter chinensis
taxonomy: Bacteria; Proteobacteria; Gammaproteobacteria; Moraxellales; Moraxellaceae; Acinetobacter.
reference: 1
reference: 2
reference: 3
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP032129.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Unicycler v. 0.4.6\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 200.0x\nSequencing Technology :: Illumina HiSeq; MinION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 11/06/2022 02:53:18\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 3,604\nCDSs (total) :: 3,496\nGenes (coding) :: 3,442\nCDSs (with protein) :: 3,442\nGenes (RNA) :: 108\nrRNAs :: 7, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 7, 7, 7 (5S, 16S, 23S)\ntRNAs :: 83\nncRNAs :: 4\nPseudo Genes (total) :: 54\nCDSs (without protein) :: 54\nPseudo Genes (ambiguous residues) :: 0 of 54\nPseudo Genes (frameshifted) :: 13 of 54\nPseudo Genes (incomplete) :: 40 of 54\nPseudo Genes (internal stop) :: 10 of 54\nPseudo Genes (multiple problems) :: 9 of 54\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 4353
topology: circular
so has quality: SO_0000988
location: 1..4353
location: region:1-4353:1
RO_0002162: 2004650

NZ_CP032129
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN07138949
type: BioSample
SIO_000068: biosample

1
title: The complete genome of Acinetobacter sp. strain WCHAc010005
author: Hu, Y.
author: Long, H.
author: Feng, Y.
author: Zong, Z.
journal: Unpublished

2
title: Direct Submission
author: Hu, Y.
author: Long, H.
author: Feng, Y.
author: Zong, Z.
journal: Submitted (03-SEP-2018) Center of Infectious Diseases, West China Hospital, Sichuan University, Guoxuexiang 37, Chengdu, Sichuan 610041, China

3
title: Direct Submission
author: Hu, Y.
author: Feng, Y.
author: Zong, Z.
journal: Submitted (18-MAY-2017) Center of Infectious Diseases, West China Hospital, Sichuan University, Guoxuexiang 37, Chengdu, Sichuan 610041, China

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4353:1
position: 4353
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-4353:1:source
so part of: sequence
organism: Acinetobacter chinensis
mol type: genomic DNA
strain: WCHAc010005
isolation source: Sewage
type material: type strain of Acinetobacter chinensis
plasmid: p3_010005
country: China: Sichuan, Chengdu
collection date: 2015-10-31

2004650
type: Taxonomy
SIO_000068: taxonomy

CDG60_RS00150
type: Gene
subclass of: SO_0000704
RO_0002162: 2004650
locus tag: CDG60_RS00150
old locus tag: CDG60_00150
so part of: sequence
location: complement(join(4215..4353,1..269))
location: region:1-4353:-1
so has part: feature:1-269:-1:exon
so has part: feature:4215-4353:-1:exon
subclass of: SO_0000010

position:1:-1
position: 1
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4353:-1
position: 4353
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-269:-1:exon

position:269:-1
position: 269
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4215-4353:-1:exon

position:4215:-1
position: 4215
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

CDG60_RS00150
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2004650
locus tag: CDG60_RS00150
old locus tag: CDG60_00150
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005207259.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: conjugal transfer protein TraD
translation: MNNDWLSEKITYISALKNPSDAQKLLLELAKIQYRTPDQEKKINALIKAEKAIDRANKQKVAVRKLLNAEKEAERKARTRHLIQLGALFEIANLDQRDPAELLGVLLKTAEIDPNDMKWQIWKDLGQETLNQRKK
SIO_010081: CDG60_RS00150
subclass of: SO_0000673
so part of: CDG60_RS00150
location: complement(join(4215..4353,1..269))
location: region:1-4353:-1
so has part: feature:1-269:-1:exon
so has part: feature:4215-4353:-1:exon

WP_068599486.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1-269:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4215-4353:-1:exon

CDG60_RS18255
type: Gene
subclass of: SO_0000704
RO_0002162: 2004650
locus tag: CDG60_RS18255
old locus tag: CDG60_00155
so part of: sequence
location: 550..705
location: region:550-705:1
so has part: feature:550-705:1:exon
subclass of: SO_0000010

position:550:1
position: 550
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:705:1
position: 705
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:550-705:1:exon

CDG60_RS18255
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2004650
locus tag: CDG60_RS18255
old locus tag: CDG60_00155
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005098410.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MQLKQVLGKIKDITFGVIAAPLLIIIMMWASILDQRAFKKELDRKKGQDKT
SIO_010081: CDG60_RS18255
subclass of: SO_0000673
so part of: CDG60_RS18255
location: 550..705
location: region:550-705:1
so has part: feature:550-705:1:exon

WP_165382092.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:550-705:1:exon

CDG60_RS00160
type: Gene
subclass of: SO_0000704
RO_0002162: 2004650
locus tag: CDG60_RS00160
old locus tag: CDG60_00160
so part of: sequence
location: 705..1634
location: region:705-1634:1
so has part: feature:705-1634:1:exon
subclass of: SO_0000010

position:1634:1
position: 1634
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:705-1634:1:exon

CDG60_RS00160
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2004650
locus tag: CDG60_RS00160
old locus tag: CDG60_00160
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005249378.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MobA/MobL family protein
translation: MAIARLSVKVGKAGKAAPHAEYIDRDEEKKLKQEQAETDLEHSAYGNMPKWAEHNPITFWQAADLYERKNGSTYREYEIALPREMNAEQRLELVEDFIQSEIGSKYPYQFAIHNPKAMDGNDQPHVHLMFNERLQDGIERDPEQYFKRYNSKNPERGGAKKDNTGKSYQERKTDIKDLRQRWADLCNSHLEKHQIDSRIDMRSYKEQGIEKEPEKKLLPSQAKDPEIREALQQSRTAYKELERLDLGDPKNDLKDLKNSPISDKEIKQGIESFKADFDSFKQLALQQYKEQQKLEREQQKTMKFRGMSR
SIO_010081: CDG60_RS00160
subclass of: SO_0000673
so part of: CDG60_RS00160
location: 705..1634
location: region:705-1634:1
so has part: feature:705-1634:1:exon

WP_023274844.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:705-1634:1:exon

CDG60_RS00165
type: Gene
subclass of: SO_0000704
RO_0002162: 2004650
locus tag: CDG60_RS00165
old locus tag: CDG60_00165
so part of: sequence
location: 1631..2131
location: region:1631-2131:1
so has part: feature:1631-2131:1:exon
subclass of: SO_0000010

position:1631:1
position: 1631
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2131:1
position: 2131
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1631-2131:1:exon

CDG60_RS00165
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2004650
locus tag: CDG60_RS00165
old locus tag: CDG60_00165
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018680098.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTPDEKKLYALMAVAEQQQNLVNQAVKELQITEERIQKVIAGQTHSTVSKSLNTGLQEGTAELIKTAKALGRLNNSIDSVIHQWSWKLIAIVLGAFAILMLAMTWLFVVYIKPLGNIPQIESLKQQGIQFDIGSCTVGEESKPCVRVMKKQCGYGKNGDFCVIDPK
SIO_010081: CDG60_RS00165
subclass of: SO_0000673
so part of: CDG60_RS00165
location: 1631..2131
location: region:1631-2131:1
so has part: feature:1631-2131:1:exon

WP_058061498.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1631-2131:1:exon

CDG60_RS00175
type: Gene
subclass of: SO_0000704
RO_0002162: 2004650
locus tag: CDG60_RS00175
old locus tag: CDG60_00175
so part of: sequence
location: 2977..4161
location: region:2977-4161:1
so has part: feature:2977-4161:1:exon
subclass of: SO_0000010

position:2977:1
position: 2977
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4161:1
position: 4161
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2977-4161:1:exon

CDG60_RS00175
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2004650
locus tag: CDG60_RS00175
old locus tag: CDG60_00175
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005207260.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTRSRFFKKTYHSNYRGKVSVEDAVKHQTYLDDMRKDAVFYCVDHIESSMIPHSMLHKIIQKLKTKQNDSLTLPEKAYLVRQNLNALHSLVEGKISFNQYKKEVVNDRIKHQEHLEAERLRLEKLRELELIQLKKQQEKLAQERKVREQAERERRKKLESDPKYIERQKEKNLIKKYDIYFYDIADKHRSKLINILKLLDNNQKLSEQDAIWLNSEGRQFFTDELKIKFHRVEADFYLNQYKTTKLHWHAINASSQLRKAKASKEAEKFLENTEISLNKNKKLLSAYFTTLGGVKRDIRKVDTAIECGVKAHENNSQDYRPCTLLGAIYMENHEYTLGHDWYSKARDRGAPEKSINADLRSILLKLDKSKRIEMIASLLKKDPYLYGWLKDIKK
SIO_010081: CDG60_RS00175
subclass of: SO_0000673
so part of: CDG60_RS00175
location: 2977..4161
location: region:2977-4161:1
so has part: feature:2977-4161:1:exon

WP_087514469.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2977-4161:1:exon