Acinetobacter chinensis strain WCHAc010005 plasmid p2_010005, complete sequence.
type: Entry
definition: Acinetobacter chinensis strain WCHAc010005 plasmid p2_010005, complete sequence.
sequence version: NZ_CP032128.1
sequence date: 2022-11-06
sequence: sequence
division: CON
label: NZ_CP032128.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN07138949
keyword: RefSeq
source: Acinetobacter chinensis
organism: Acinetobacter chinensis
taxonomy: Bacteria; Proteobacteria; Gammaproteobacteria; Moraxellales; Moraxellaceae; Acinetobacter.
reference: 1
reference: 2
reference: 3
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP032128.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Unicycler v. 0.4.6\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 200.0x\nSequencing Technology :: Illumina HiSeq; MinION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 11/06/2022 02:53:18\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 3,604\nCDSs (total) :: 3,496\nGenes (coding) :: 3,442\nCDSs (with protein) :: 3,442\nGenes (RNA) :: 108\nrRNAs :: 7, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 7, 7, 7 (5S, 16S, 23S)\ntRNAs :: 83\nncRNAs :: 4\nPseudo Genes (total) :: 54\nCDSs (without protein) :: 54\nPseudo Genes (ambiguous residues) :: 0 of 54\nPseudo Genes (frameshifted) :: 13 of 54\nPseudo Genes (incomplete) :: 40 of 54\nPseudo Genes (internal stop) :: 10 of 54\nPseudo Genes (multiple problems) :: 9 of 54\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 5433
topology: circular
so has quality: SO_0000988
location: 1..5433
location: region:1-5433:1
RO_0002162: 2004650

NZ_CP032128
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN07138949
type: BioSample
SIO_000068: biosample

1
title: The complete genome of Acinetobacter sp. strain WCHAc010005
author: Hu, Y.
author: Long, H.
author: Feng, Y.
author: Zong, Z.
journal: Unpublished

2
title: Direct Submission
author: Hu, Y.
author: Long, H.
author: Feng, Y.
author: Zong, Z.
journal: Submitted (03-SEP-2018) Center of Infectious Diseases, West China Hospital, Sichuan University, Guoxuexiang 37, Chengdu, Sichuan 610041, China

3
title: Direct Submission
author: Hu, Y.
author: Feng, Y.
author: Zong, Z.
journal: Submitted (18-MAY-2017) Center of Infectious Diseases, West China Hospital, Sichuan University, Guoxuexiang 37, Chengdu, Sichuan 610041, China

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5433:1
position: 5433
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-5433:1:source
so part of: sequence
organism: Acinetobacter chinensis
mol type: genomic DNA
strain: WCHAc010005
isolation source: Sewage
type material: type strain of Acinetobacter chinensis
plasmid: p2_010005
country: China: Sichuan, Chengdu
collection date: 2015-10-31

2004650
type: Taxonomy
SIO_000068: taxonomy

CDG60_RS00120
type: Gene
subclass of: SO_0000704
RO_0002162: 2004650
locus tag: CDG60_RS00120
old locus tag: CDG60_00120
so part of: sequence
location: 136..411
location: region:136-411:1
so has part: feature:136-411:1:exon
subclass of: SO_0000010

position:136:1
position: 136
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:411:1
position: 411
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:136-411:1:exon

CDG60_RS00120
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2004650
locus tag: CDG60_RS00120
old locus tag: CDG60_00120
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004728109.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKIESLEQQISKQQERLKQLKAQKQAAVARERSKQKELERKNDTRRKILIGSCMLKIVENDTVAHEKLMAQLDKYLTENRDRELFNLPLKE
SIO_010081: CDG60_RS00120
subclass of: SO_0000673
so part of: CDG60_RS00120
location: 136..411
location: region:136-411:1
so has part: feature:136-411:1:exon

WP_004919011.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:136-411:1:exon

CDG60_RS00125
type: Gene
subclass of: SO_0000704
RO_0002162: 2004650
locus tag: CDG60_RS00125
old locus tag: CDG60_00125
so part of: sequence
location: 415..1203
location: region:415-1203:1
so has part: feature:415-1203:1:exon
subclass of: SO_0000010

position:415:1
position: 415
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1203:1
position: 1203
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:415-1203:1:exon

CDG60_RS00125
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2004650
locus tag: CDG60_RS00125
old locus tag: CDG60_00125
inference: COORDINATES: similar to AA sequence:RefSeq:YP_004997324.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ANT(3'')-II family aminoglycoside nucleotidyltransferase
translation: MPDLIQLEYLQEKLQQLLAESLFAIYLYGSAVDGGLGPESDLDVLVVVTQPLTSALREQLAQELLKISQPVGELQRPLEVTILLKDEIQSGIYPLSYEMQFGEWLREELKEGGILSSQKDPDISILLRKARSHHTVLFGPALNQWAPEISDQELWQAMSDTYPEIVAHWDEDADERNQILALCRIYFSLVMKDIASKDNAARWVMSQLSDEQKFVLQRLIQEYRGEIGKQNWQEEHYALQPIVNFLSSKIEEQFEQKRNLIT
SIO_010081: CDG60_RS00125
subclass of: SO_0000673
so part of: CDG60_RS00125
location: 415..1203
location: region:415-1203:1
so has part: feature:415-1203:1:exon

WP_005071978.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:415-1203:1:exon

CDG60_RS00130
type: Gene
subclass of: SO_0000704
RO_0002162: 2004650
gene: trbL
locus tag: CDG60_RS00130
old locus tag: CDG60_00130
so part of: sequence
location: 1225..2130
location: region:1225-2130:1
so has part: feature:1225-2130:1:exon
subclass of: SO_0000010

position:1225:1
position: 1225
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2130:1
position: 2130
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1225-2130:1:exon

CDG60_RS00130
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2004650
gene: trbL
locus tag: CDG60_RS00130
old locus tag: CDG60_00130
inference: COORDINATES: protein motif:HMM:TIGR02783.1
GO process: GO:0009291 - unidirectional conjugation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: P-type conjugative transfer protein TrbL
translation: MSWLLMNSATFAEAIVNSFRQAASTASGYSLLTPSDFFVNGWKIVQEILNSVSAWSPIDSLGMLIASIIIMIAFALICAFLVLALVEMYIVVSASVLMMGFAGSQWTKDYALKTIQYAVSVGAKIFILQLIAGLGLTFIQEWATGFNVEDNVSLVGMIGCSVVLLALTKIVPDMLQGVINGSSIGSGAALTSALRAVAAATAGAAAGAAGASMATKGAGALASEQLKTAQATGTGPSSAMGKAGFMAGNMAMNMSSALKSDLGSRLSGSTTGGRMAGSMMNKANELRSKRSKSNQDENTIS
SIO_010081: CDG60_RS00130
subclass of: SO_0000673
so part of: CDG60_RS00130
location: 1225..2130
location: region:1225-2130:1
so has part: feature:1225-2130:1:exon

WP_204832353.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1225-2130:1:exon

CDG60_RS00135
type: Gene
subclass of: SO_0000704
RO_0002162: 2004650
locus tag: CDG60_RS00135
old locus tag: CDG60_00135
so part of: sequence
location: complement(2152..2385)
location: region:2152-2385:-1
so has part: feature:2152-2385:-1:exon
subclass of: SO_0000010

position:2152:-1
position: 2152
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2385:-1
position: 2385
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2152-2385:-1:exon

CDG60_RS00135
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2004650
locus tag: CDG60_RS00135
old locus tag: CDG60_00135
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004918992.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTDLSKLSETELLAIWNKDNFGLKGQLYKLEQEYIEAKEILDNRQNKDHPLYERHQSCVDGLITRIERIKQQLNKCE
SIO_010081: CDG60_RS00135
subclass of: SO_0000673
so part of: CDG60_RS00135
location: complement(2152..2385)
location: region:2152-2385:-1
so has part: feature:2152-2385:-1:exon

WP_087514467.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2152-2385:-1:exon

CDG60_RS00140
type: Gene
subclass of: SO_0000704
RO_0002162: 2004650
gene: repM
locus tag: CDG60_RS00140
old locus tag: CDG60_00140
so part of: sequence
location: complement(2401..3339)
location: region:2401-3339:-1
so has part: feature:2401-3339:-1:exon
subclass of: SO_0000010

position:2401:-1
position: 2401
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3339:-1
position: 3339
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2401-3339:-1:exon

CDG60_RS00140
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2004650
gene: repM
locus tag: CDG60_RS00140
old locus tag: CDG60_00140
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005404815.1
GO function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO process: GO:0006270 - DNA replication initiation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication initiation protein RepM
translation: MKKDLVVKDNALINASYNLDLAEQRLILLAILEARESNIPSDRDLTIHAESYINHFNVHRNTAYKVLKDACKNLFERRFSYQKLTAKGNLENVMSRWVQRVSYVENEALVRIRFSDDVVPLITNLEKHFTSYELEQVSSLTSAYAIRLYELLIAWRSTGKVSMLETKELRSRLGVLDTEHQRMESFKRRVLEPAIQQINDHTDIKAEYEQHKRGRSIIGFSFSFKQKSKPKTINHERDPSTVDMFCNLSDSQINTYSSVLSKVHSISDLAGNKDYQAFAIWIANILRDPSSVREETAKRIFKALRTETDFKG
SIO_010081: CDG60_RS00140
subclass of: SO_0000673
so part of: CDG60_RS00140
location: complement(2401..3339)
location: region:2401-3339:-1
so has part: feature:2401-3339:-1:exon

WP_065996348.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2401-3339:-1:exon

CDG60_RS00145
type: Gene
subclass of: SO_0000704
RO_0002162: 2004650
locus tag: CDG60_RS00145
old locus tag: CDG60_00145
so part of: sequence
location: complement(3941..5359)
location: region:3941-5359:-1
so has part: feature:3941-5359:-1:exon
subclass of: SO_0000010

position:3941:-1
position: 3941
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5359:-1
position: 5359
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3941-5359:-1:exon

CDG60_RS00145
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2004650
locus tag: CDG60_RS00145
old locus tag: CDG60_00145
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004919014.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MobA/MobL family protein
translation: MAIFHFSVKNISRSDGRSAVACAAYRSGEKLKDERYGKEQDYTKKTGIEFKNIYAPENTKKELLDRETLWNTVETIETRKNSQLSREFEVAFPCELNQEQREKMLNELCGKIVERHKVVVDAVIHAPHTAGGSDDRNYHAHIMLTTRSINQQGDLDKKTREFNDNGKQEVEHWRQQFAELCNQFLEQVGSHERVDHRSYKEQGLDLEATQHEGSTITQLRRQGKDTEISLSNDAIKARNTERQLIKGLEQEILATERLVHDLEQTRENLDQEQRQKEKDQEQRSPEELTKIAYSVISQYNDAIATEAKNIASSIQKTEIEQINAVLEQIELSKSDIKHQKEELGKRPLFFGGKWDTANAEIQKQLNQLEEQERELRNNSPRFEPERYTDRAKLTVNKANPNLKAKYDRARNYLEREQQRKLAEQEKRKQEAKAIQEQEKQAFFARKALREQGKHEEANKMLEAEKRNRPRSR
SIO_010081: CDG60_RS00145
subclass of: SO_0000673
so part of: CDG60_RS00145
location: complement(3941..5359)
location: region:3941-5359:-1
so has part: feature:3941-5359:-1:exon

WP_065996350.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3941-5359:-1:exon