Acinetobacter chinensis strain WCHAc010005 plasmid p1_010005, complete sequence.
type: Entry
definition: Acinetobacter chinensis strain WCHAc010005 plasmid p1_010005, complete sequence.
sequence version: NZ_CP032127.1
sequence date: 2022-11-06
sequence: sequence
division: CON
label: NZ_CP032127.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN07138949
keyword: RefSeq
source: Acinetobacter chinensis
organism: Acinetobacter chinensis
taxonomy: Bacteria; Proteobacteria; Gammaproteobacteria; Moraxellales; Moraxellaceae; Acinetobacter.
reference: 1
reference: 2
reference: 3
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP032127.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Unicycler v. 0.4.6\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 200.0x\nSequencing Technology :: Illumina HiSeq; MinION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 11/06/2022 02:53:18\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 3,604\nCDSs (total) :: 3,496\nGenes (coding) :: 3,442\nCDSs (with protein) :: 3,442\nGenes (RNA) :: 108\nrRNAs :: 7, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 7, 7, 7 (5S, 16S, 23S)\ntRNAs :: 83\nncRNAs :: 4\nPseudo Genes (total) :: 54\nCDSs (without protein) :: 54\nPseudo Genes (ambiguous residues) :: 0 of 54\nPseudo Genes (frameshifted) :: 13 of 54\nPseudo Genes (incomplete) :: 40 of 54\nPseudo Genes (internal stop) :: 10 of 54\nPseudo Genes (multiple problems) :: 9 of 54\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 18155
topology: circular
so has quality: SO_0000988
location: 1..18155
location: region:1-18155:1
RO_0002162: 2004650

NZ_CP032127
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN07138949
type: BioSample
SIO_000068: biosample

1
title: The complete genome of Acinetobacter sp. strain WCHAc010005
author: Hu, Y.
author: Long, H.
author: Feng, Y.
author: Zong, Z.
journal: Unpublished

2
title: Direct Submission
author: Hu, Y.
author: Long, H.
author: Feng, Y.
author: Zong, Z.
journal: Submitted (03-SEP-2018) Center of Infectious Diseases, West China Hospital, Sichuan University, Guoxuexiang 37, Chengdu, Sichuan 610041, China

3
title: Direct Submission
author: Hu, Y.
author: Feng, Y.
author: Zong, Z.
journal: Submitted (18-MAY-2017) Center of Infectious Diseases, West China Hospital, Sichuan University, Guoxuexiang 37, Chengdu, Sichuan 610041, China

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18155:1
position: 18155
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-18155:1:source
so part of: sequence
organism: Acinetobacter chinensis
mol type: genomic DNA
strain: WCHAc010005
isolation source: Sewage
type material: type strain of Acinetobacter chinensis
plasmid: p1_010005
country: China: Sichuan, Chengdu
collection date: 2015-10-31

2004650
type: Taxonomy
SIO_000068: taxonomy

CDG60_RS00005
type: Gene
subclass of: SO_0000704
RO_0002162: 2004650
gene: repM
locus tag: CDG60_RS00005
old locus tag: CDG60_00005
so part of: sequence
location: 1..888
location: region:1-888:1
so has part: feature:1-888:1:exon
subclass of: SO_0000010

position:888:1
position: 888
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-888:1:exon

CDG60_RS00005
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2004650
gene: repM
locus tag: CDG60_RS00005
old locus tag: CDG60_00005
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000360254.1
GO function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO process: GO:0006270 - DNA replication initiation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication initiation protein RepM
translation: MDKNQIVKSNQVIEASYQLSAVEQRIVLAAISRIPKSQPITDDELYPVSVSELQLLGVHEKTAYRDLKEGINRLYERSINLSIDDKSIKMRWVQEIQFLDSQSIIGIRFSKPILPFISNLSREFTKYALSDIAGINSGYGIRIYELLVQYRQIGKREISVESLRSMLELGKKYPLFADFKKRVIDTAVDQINECSPLSVSYEQKKTGRKVTHILFSFKEKSKSINQNNEQDKVYKLTDAQINMFGNQLSRLHELSHLAAQGESYDVLASRIKEMLRDPIQQKQFIPHLRNLGFKG
SIO_010081: CDG60_RS00005
subclass of: SO_0000673
so part of: CDG60_RS00005
location: 1..888
location: region:1-888:1
so has part: feature:1-888:1:exon

WP_087514419.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1-888:1:exon

CDG60_RS00010
type: Gene
subclass of: SO_0000704
RO_0002162: 2004650
locus tag: CDG60_RS00010
old locus tag: CDG60_00010
so part of: sequence
location: 965..1522
location: region:965-1522:1
so has part: feature:965-1522:1:exon
subclass of: SO_0000010

position:965:1
position: 965
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1522:1
position: 1522
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:965-1522:1:exon

CDG60_RS00010
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2004650
locus tag: CDG60_RS00010
old locus tag: CDG60_00010
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017398013.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid replication DNA-binding protein
translation: MKSLSVIELSNLYGMTRQAVYKQINKGNLSKNSDGKIDLSEAIRVFGEPSKHVNSSQTTETRKLSEVHLLEQQVHMLQKQLEQAHDREKFQRDELKAKNDQLHVKDEQIEAMQRLLEAPKTNMTTFTDQKPSQNIATDPRPEPELKHDGLTTLEQTENKRIPVPEHVELEQPKRGWLSRFFLPNG
SIO_010081: CDG60_RS00010
subclass of: SO_0000673
so part of: CDG60_RS00010
location: 965..1522
location: region:965-1522:1
so has part: feature:965-1522:1:exon

WP_087514420.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:965-1522:1:exon

CDG60_RS00015
type: Gene
subclass of: SO_0000704
RO_0002162: 2004650
gene: msr(E)
locus tag: CDG60_RS00015
old locus tag: CDG60_00015
so part of: sequence
location: 2124..3599
location: region:2124-3599:1
so has part: feature:2124-3599:1:exon
subclass of: SO_0000010

position:2124:1
position: 2124
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3599:1
position: 3599
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2124-3599:1:exon

CDG60_RS00015
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2004650
gene: msr(E)
locus tag: CDG60_RS00015
old locus tag: CDG60_00015
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000052512.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ABC-F type ribosomal protection protein Msr(E)
translation: MSLIIKARNIRLDYAGRDVLDIDELEIHSYDRIGLVGDNGAGKSSLLKVLNGEIVLAEATLQRFGDFAHISQLGGIEIETVEDRAMLSRLGVSNVQNDTMSGGEETRAKIAAAFSQQVHGILADEPTSHLDLNGIDLLIGQLKAFDGALLVISHDRYFLDMVVDKIWELKDGKITEYWGGYSDYLRQKEEERQHQAVEYELMMKERERLESAVQEKRQQANRLDNKKKGEKSKNSTESAGRLGHAKMTGTKQRKLYQAAKSMEKRLAALEDIQAPEHLRSIRFRQSSALELHNKFPITADGLSLKFGSRTIFDDANFIIPLGAKVAITGSNGTGKTSLLKMISERADGLTISPKAEIGYFTQTGYKFNTHKSVLSFMQEECEYTVAEIRAVLASMGIGANDIQKNLSDLSGGEIIKLLLSKMLLGKYNILLMDEPGNYLDLKSIAALETMMKSYAGTIIFVSHDKQLVDNIADIIYEIKDHKIIKTFERDC
SIO_010081: CDG60_RS00015
subclass of: SO_0000673
so part of: CDG60_RS00015
location: 2124..3599
location: region:2124-3599:1
so has part: feature:2124-3599:1:exon

WP_000052512.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2124-3599:1:exon

CDG60_RS00020
type: Gene
subclass of: SO_0000704
RO_0002162: 2004650
locus tag: CDG60_RS00020
old locus tag: CDG60_00020
so part of: sequence
location: 3655..4539
location: region:3655-4539:1
so has part: feature:3655-4539:1:exon
subclass of: SO_0000010

position:3655:1
position: 3655
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4539:1
position: 4539
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3655-4539:1:exon

CDG60_RS00020
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2004650
locus tag: CDG60_RS00020
old locus tag: CDG60_00020
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014325835.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Mph(E) family macrolide 2'-phosphotransferase
translation: MTIQDIQSLAEAHGLLLTDKMNFNEMGIDFKVVFALDTKGQQWLLRIPRRDGMREQIKKEKRILELVKKHLSVEVPDWRISSTELVAYPILKDNPVLNLDAETYEIIWNMDKDSPKYITSLAKTLFEIHSIPEKEVRENDLKIMKPSDLRPEIANNLQLVKSEIGISEQLETRYRKWLDNDVLWADFTQFIHGDLYAGHVLASKDGAVSGVIDWSTAHIDDPAIDFAGHVTLFGEESLKTLIIEYEKLGGKVWNKLYEQTLERAAASPLMYGLFALETQNESLIVGAKAQLGVI
SIO_010081: CDG60_RS00020
subclass of: SO_0000673
so part of: CDG60_RS00020
location: 3655..4539
location: region:3655-4539:1
so has part: feature:3655-4539:1:exon

WP_000155092.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3655-4539:1:exon

CDG60_RS00030
type: Gene
subclass of: SO_0000704
RO_0002162: 2004650
locus tag: CDG60_RS00030
old locus tag: CDG60_00030
so part of: sequence
location: 4792..6117
location: region:4792-6117:1
so has part: feature:4792-6117:1:exon
subclass of: SO_0000010

position:4792:1
position: 4792
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6117:1
position: 6117
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4792-6117:1:exon

CDG60_RS00030
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2004650
locus tag: CDG60_RS00030
old locus tag: CDG60_00030
inference: COORDINATES: similar to AA sequence:RefSeq:WP_076611903.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ISNCY family transposase
translation: MSDKELKRLSVLQEICDQRITQSQAAQLLHISERQIRRLLQKYKAQGPAALAHAARGQISNSRLPEELRLKCLNIVSDQLHGFGPTLAHEKLTTVHGFDISVETLRSWMIAADLWIPRAKRLKRPYQPRYNRDCYGELIQIDGSHHDWFEGRAAKCCLLVFIDDATGKLQHLRFCESESAFDYMISTRLYVEQHGKPLAFYSDKHSVFRVNQSSKKDTKITQFGRVLSTLNIDIIFANSPQAKGRVERANRTLQDRLIKEMRLEGIYSIEQANAWLPCFIEQFNRKFANMAFNPKDLHRTVTETAEELDDVFTWREPRRVTNSLTITYDKCVYLLENTEENKRLIGKYLEFLEYPDGTVAIEHQGRKINYSIFDKLSQLNQREVVENKRLGAVLNHIQQQHEELEQQNKRNRSQKMPSRRAQKTVIKERNLNPVLDLEVSV
SIO_010081: CDG60_RS00030
subclass of: SO_0000673
so part of: CDG60_RS00030
location: 4792..6117
location: region:4792-6117:1
so has part: feature:4792-6117:1:exon

WP_079393426.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4792-6117:1:exon

CDG60_RS00035
type: Gene
subclass of: SO_0000704
RO_0002162: 2004650
locus tag: CDG60_RS00035
old locus tag: CDG60_00035
so part of: sequence
location: complement(6217..6828)
location: region:6217-6828:-1
so has part: feature:6217-6828:-1:exon
subclass of: SO_0000010

position:6217:-1
position: 6217
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6828:-1
position: 6828
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6217-6828:-1:exon

CDG60_RS00035
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2004650
locus tag: CDG60_RS00035
old locus tag: CDG60_00035
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004889724.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO process: GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MIEMNTRIYLRASTKDQDAERALQILQDLNQNLNLGETIVYVENYSGTKLDRPELNKLLSEANQGDTLLVESIDRLSRLTQRDFQELKRRIQEKGLRLVVADLPTTYQMIQTSDSITHSILELINNMLIDLLATMARLDNEKRIERIKQGLARSGYKPTGKKANEAKHKRIKELLVVGNMTKEEIAKAVNCGVATVYRVAKVI
SIO_010081: CDG60_RS00035
subclass of: SO_0000673
so part of: CDG60_RS00035
location: complement(6217..6828)
location: region:6217-6828:-1
so has part: feature:6217-6828:-1:exon

WP_015060246.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6217-6828:-1:exon

CDG60_RS00040
type: Gene
subclass of: SO_0000704
RO_0002162: 2004650
locus tag: CDG60_RS00040
old locus tag: CDG60_00040
so part of: sequence
location: complement(7054..8241)
location: region:7054-8241:-1
so has part: feature:7054-8241:-1:exon
subclass of: SO_0000010

position:7054:-1
position: 7054
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8241:-1
position: 8241
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7054-8241:-1:exon

CDG60_RS00040
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2004650
locus tag: CDG60_RS00040
old locus tag: CDG60_00040
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004856455.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: tetracycline efflux MFS transporter Tet(39)
translation: MKKSLSVILITIFLDAVGIGLIMPILPELLRSLAGAEAGGVHYGALLAVYALMQFIFAPILGALSDRFGRRPVLIISIAGATADYLLMAAAPSLLWLYIGRIFAGITGANMAVATAYVSDITPAHERAKRFGLLGAVFGIGFIAGPVIGGVLGEWNLHAPFFAAAFMNGINLIMTAVLLKESKHSNKMTEKVQEQSILKKLSYLITQPNMAPLLGIFLIITLVSQVPATLWVIYGQDRYGWSIFIAGVSLASYGICHSIAQAFAIAPMVKRFGEKNTLLCGIACDAIGLLLLSIAVEEWVPFALLPLFALGGVAVPALQAMMSRGISDERQGELQGLLSSFNSLGAIIGPVLVTSLYFMTQASAPGMVWALAAILYVITLPLLLKYRLNKYSGVP
SIO_010081: CDG60_RS00040
subclass of: SO_0000673
so part of: CDG60_RS00040
location: complement(7054..8241)
location: region:7054-8241:-1
so has part: feature:7054-8241:-1:exon

WP_004856455.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7054-8241:-1:exon

CDG60_RS00045
type: Gene
subclass of: SO_0000704
RO_0002162: 2004650
locus tag: CDG60_RS00045
old locus tag: CDG60_00045
so part of: sequence
location: 8307..8948
location: region:8307-8948:1
so has part: feature:8307-8948:1:exon
subclass of: SO_0000010

position:8307:1
position: 8307
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8948:1
position: 8948
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8307-8948:1:exon

CDG60_RS00045
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2004650
locus tag: CDG60_RS00045
old locus tag: CDG60_00045
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016927662.1
GO process: GO:0045892 - negative regulation of DNA-templated transcription [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: TetR/AcrR family transcriptional regulator C-terminal domain-containing protein
translation: MSKKDIAPQRLTREIVLRTALDMLNEEGIDSITTRKLAQRLGIKSPTLYWHFKNKSLLMEAMAETIINEHHLVSLPIDGMTWQDWLLANSVSFRRALLAYRDGARLHARTSPSQGHFNTIEAQVALLSHAGFSPVEAVALLMTLGRFIVGWVLEEQQEEIRSDPPFEADPTIYPLMLQGVNTLQNMNADDIFENGIRMVIIGAERQLDIKMQT
SIO_010081: CDG60_RS00045
subclass of: SO_0000673
so part of: CDG60_RS00045
location: 8307..8948
location: region:8307-8948:1
so has part: feature:8307-8948:1:exon

WP_004787586.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8307-8948:1:exon

CDG60_RS00050
type: Gene
subclass of: SO_0000704
RO_0002162: 2004650
locus tag: CDG60_RS00050
old locus tag: CDG60_00050
so part of: sequence
location: complement(9078..10210)
location: region:9078-10210:-1
so has part: feature:9078-10210:-1:exon
subclass of: SO_0000010

position:9078:-1
position: 9078
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10210:-1
position: 10210
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9078-10210:-1:exon

CDG60_RS00050
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2004650
locus tag: CDG60_RS00050
old locus tag: CDG60_00050
inference: COORDINATES: similar to AA sequence:RefSeq:WP_032072965.1
ribosomal slippage: true
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS3-like element ISAba14 family transposase
translation: MARRPRRNHSNDFKAKVALAAIKAEKTLAELSAEFDVHQNQIIDWKNQLISASSQAFDQSKAPTEPPIDLKKLHAKIGEQALEIGFFRRCVEETGPLQPQKLIDDSLQISVSKQAKLLKVSRGCYYYRPKPVSASDLKLMRCIDELHMQYPFAGSRMMRDLLNRQGHHIGRRHTRTLMKKMGIQALYCKPNLSQANQAHRKYPYLLKGLAIQRSNQVWSTDITYIPMAKGFVYLCAVIDWHSRKVLAHRVSISMEVDFCISALNEAIEKYGRPEIFNTDQGSQFTSDAFIDVLKSNGIQISMDGKGRWVDNVMVERLWRSVKYEEVYLKAYSSVTDAKKQLSAYFEFYNLKRPHSSLDKMTPNEFYYDQLPQQNKVA
SIO_010081: CDG60_RS00050
subclass of: SO_0000673
so part of: CDG60_RS00050
location: complement(join(9078..9958,9958..10210))
location: region:9078-10210:-1
so has part: feature:9958-10210:-1:exon
so has part: feature:9078-9958:-1:exon

WP_223155595.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9958-10210:-1:exon

position:9958:-1
position: 9958
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:9078-9958:-1:exon

CDG60_RS00065
type: Gene
subclass of: SO_0000704
RO_0002162: 2004650
locus tag: CDG60_RS00065
old locus tag: CDG60_00065
so part of: sequence
location: complement(11179..12135)
location: region:11179-12135:-1
so has part: feature:11179-12135:-1:exon
subclass of: SO_0000010

position:11179:-1
position: 11179
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12135:-1
position: 12135
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11179-12135:-1:exon

CDG60_RS00065
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2004650
locus tag: CDG60_RS00065
old locus tag: CDG60_00065
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000353905.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKLNYFTYCFEKFEDKSQFRMEINDFIKSSTSNEALPFAKQNRHSGENLYLLPVVNSFYLFVQTKDREIIKRIEKKDDEIKAYEIQSLLSKDESLGFASYVYFHPTLRVFGFASRVLSPKFTAFQMYINNLLVMLRIQDISFVVHPLKTEITKNQAMTLPFIGTTRFLVRKDSSLGESFKEFFLGSTNPNDLEVIESFEIIIKPASRKSLTDTIKKTLVSMEDDGIKGIILRGKQNLEDNVKDFYIHSAGALYDEIKSTEESKVFDEIKEKIENNVELKDKVEEYEQEVPEQMDDRIAYLYNPANWASDRVCLFPLSQ
SIO_010081: CDG60_RS00065
subclass of: SO_0000673
so part of: CDG60_RS00065
location: complement(11179..12135)
location: region:11179-12135:-1
so has part: feature:11179-12135:-1:exon

WP_160116940.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11179-12135:-1:exon

CDG60_RS00070
type: Gene
subclass of: SO_0000704
RO_0002162: 2004650
locus tag: CDG60_RS00070
old locus tag: CDG60_00070
so part of: sequence
location: 12560..13015
location: region:12560-13015:1
so has part: feature:12560-13015:1:exon
subclass of: SO_0000010

position:12560:1
position: 12560
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13015:1
position: 13015
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12560-13015:1:exon

CDG60_RS00070
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2004650
locus tag: CDG60_RS00070
old locus tag: CDG60_00070
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: MarR family transcriptional regulator
translation: MGKSEVSECIKRLVKVGLLVIHNQNFSQRLDLASLDWDINKRGFFHLVIYSFQYFFPAELKSMDFGLPTAFSKEGLNSLLAYSSPVPYIWPIQTYKSISGIAVEPMHKSIPYAAINDEYLYEIFAIIDIFRMGSPREKHIAEKLFLDILGL
SIO_010081: CDG60_RS00070
subclass of: SO_0000673
so part of: CDG60_RS00070
location: 12560..13015
location: region:12560-13015:1
so has part: feature:12560-13015:1:exon

WP_227542858.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12560-13015:1:exon

CDG60_RS00075
type: Gene
subclass of: SO_0000704
RO_0002162: 2004650
locus tag: CDG60_RS00075
old locus tag: CDG60_00075
so part of: sequence
location: 13021..13719
location: region:13021-13719:1
so has part: feature:13021-13719:1:exon
subclass of: SO_0000010

position:13021:1
position: 13021
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13719:1
position: 13719
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13021-13719:1:exon

CDG60_RS00075
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2004650
locus tag: CDG60_RS00075
old locus tag: CDG60_00075
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004676013.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNSPLIIMLEKVANALTQDLRQEMVFIGGCTTSLLLDPENHSLATRYTYDVDLIVDITTHAEWYSLEEKIRKLGFVNDQNDNILCRYRLGNDLIVDFMPTDSNILGFSNYWYEQAITHKITYCLPNKTEINILESPYFLATKFEAYKGRGNNDPLMSKDIEDILTVCMGRSSLVEEIYSSPQELRDYLSNVLLELHHHSEFEIVLDDQCRYGSKERVRQVINAIIKQWNKAF
SIO_010081: CDG60_RS00075
subclass of: SO_0000673
so part of: CDG60_RS00075
location: 13021..13719
location: region:13021-13719:1
so has part: feature:13021-13719:1:exon

WP_087514413.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13021-13719:1:exon

CDG60_RS00080
type: Gene
subclass of: SO_0000704
RO_0002162: 2004650
locus tag: CDG60_RS00080
old locus tag: CDG60_00080
so part of: sequence
location: 13719..14393
location: region:13719-14393:1
so has part: feature:13719-14393:1:exon
subclass of: SO_0000010

position:14393:1
position: 14393
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13719-14393:1:exon

CDG60_RS00080
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2004650
locus tag: CDG60_RS00080
old locus tag: CDG60_00080
inference: COORDINATES: protein motif:HMM:NF012693.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MIFFHFTHNQCLPNKHGIDGTGELKSNPLLELCYVIDGHSKHPNSAILVSNFHKFILEKKEEFTDLINEDEVIREFLERVIKEFHKSQYRQLIPAAMSICLIIFSPQKVYSVHLGDCRLGLIFEKKLEWLTYPHNLTMCRIIDIETLDLEETLRSSADNHIVTNSLNTKRLKKIEINVFNRKKGTYLLATDGLWKLEVHKILSTVKNKENYNEIDDLAFIIAND
SIO_010081: CDG60_RS00080
subclass of: SO_0000673
so part of: CDG60_RS00080
location: 13719..14393
location: region:13719-14393:1
so has part: feature:13719-14393:1:exon

WP_087514414.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13719-14393:1:exon

CDG60_RS00085
type: Gene
subclass of: SO_0000704
RO_0002162: 2004650
locus tag: CDG60_RS00085
old locus tag: CDG60_00085
so part of: sequence
location: 14564..14806
location: region:14564-14806:1
so has part: feature:14564-14806:1:exon
subclass of: SO_0000010

position:14564:1
position: 14564
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14806:1
position: 14806
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14564-14806:1:exon

CDG60_RS00085
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2004650
locus tag: CDG60_RS00085
old locus tag: CDG60_00085
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSFMEQIEESPAKLIAIALTVNLILLSWILDGFLQTNLIAFSLHHPDGDILIFTIIVLLLLTYMISGKSGLLMKFFSFFD
SIO_010081: CDG60_RS00085
subclass of: SO_0000673
so part of: CDG60_RS00085
location: 14564..14806
location: region:14564-14806:1
so has part: feature:14564-14806:1:exon

WP_087514415.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14564-14806:1:exon

CDG60_RS00095
type: Gene
subclass of: SO_0000704
RO_0002162: 2004650
locus tag: CDG60_RS00095
old locus tag: CDG60_00095
so part of: sequence
location: complement(15136..15393)
location: region:15136-15393:-1
so has part: feature:15136-15393:-1:exon
subclass of: SO_0000010

position:15136:-1
position: 15136
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15393:-1
position: 15393
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15136-15393:-1:exon

CDG60_RS00095
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2004650
locus tag: CDG60_RS00095
old locus tag: CDG60_00095
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017397139.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSLVERKTLNEFSTNSNDAFFNQIFSAGSKVPHSGIYRCTQCKREVAVNDHDKDNKFPPHYQDPKFNCTSPKWKPYVIADSKAEF
SIO_010081: CDG60_RS00095
subclass of: SO_0000673
so part of: CDG60_RS00095
location: complement(15136..15393)
location: region:15136-15393:-1
so has part: feature:15136-15393:-1:exon

WP_017397139.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15136-15393:-1:exon

CDG60_RS00100
type: Gene
subclass of: SO_0000704
RO_0002162: 2004650
locus tag: CDG60_RS00100
old locus tag: CDG60_00100
so part of: sequence
location: complement(15524..15829)
location: region:15524-15829:-1
so has part: feature:15524-15829:-1:exon
subclass of: SO_0000010

position:15524:-1
position: 15524
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15829:-1
position: 15829
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15524-15829:-1:exon

CDG60_RS00100
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2004650
locus tag: CDG60_RS00100
old locus tag: CDG60_00100
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017397140.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MLNRLYVKGENDPKELDILVSQIKARTYNTETLGVTHQVPFRIYQWNFEKVEALKAHLGNPTRNKLLNQLLEIALEEVFKKLEENDPEQLKEILDCIGKLK
SIO_010081: CDG60_RS00100
subclass of: SO_0000673
so part of: CDG60_RS00100
location: complement(15524..15829)
location: region:15524-15829:-1
so has part: feature:15524-15829:-1:exon

WP_087514416.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15524-15829:-1:exon

CDG60_RS00105
type: Gene
subclass of: SO_0000704
RO_0002162: 2004650
locus tag: CDG60_RS00105
old locus tag: CDG60_00105
so part of: sequence
location: 15901..16437
location: region:15901-16437:1
so has part: feature:15901-16437:1:exon
subclass of: SO_0000010

position:15901:1
position: 15901
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16437:1
position: 16437
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15901-16437:1:exon

CDG60_RS00105
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2004650
locus tag: CDG60_RS00105
old locus tag: CDG60_00105
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017397141.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MGQAKNRGSLEERVKNAKKFRKEAILSELKKIVEGHYQHVPDQFSHRQNYLDGCVIAMDIKEAMDIVLDDGDIGIIEDGCPKPEYILGLFEVALDNYGLDDNENIQECAAWVDEDISMNTTFFRFKDASEFNQLEDVLKAVNKFSFWLPTYIMLNGTWYDTYEIGAVDENGNTIGSRF
SIO_010081: CDG60_RS00105
subclass of: SO_0000673
so part of: CDG60_RS00105
location: 15901..16437
location: region:15901-16437:1
so has part: feature:15901-16437:1:exon

WP_087514417.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15901-16437:1:exon

CDG60_RS18250
type: Gene
subclass of: SO_0000704
RO_0002162: 2004650
locus tag: CDG60_RS18250
so part of: sequence
location: complement(16457..16627)
location: region:16457-16627:-1
so has part: feature:16457-16627:-1:exon
subclass of: SO_0000010

position:16457:-1
position: 16457
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16627:-1
position: 16627
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16457-16627:-1:exon

CDG60_RS18250
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2004650
locus tag: CDG60_RS18250
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005200045.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSNIIQLSKPCAFCDSRENVQLFAGLMLCGNCQDNIQITNPGMFEANDQIEQKAQD
SIO_010081: CDG60_RS18250
subclass of: SO_0000673
so part of: CDG60_RS18250
location: complement(16457..16627)
location: region:16457-16627:-1
so has part: feature:16457-16627:-1:exon

WP_171405417.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16457-16627:-1:exon

CDG60_RS00110
type: Gene
subclass of: SO_0000704
RO_0002162: 2004650
locus tag: CDG60_RS00110
old locus tag: CDG60_00110
so part of: sequence
location: complement(16620..17009)
location: region:16620-17009:-1
so has part: feature:16620-17009:-1:exon
subclass of: SO_0000010

position:16620:-1
position: 16620
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17009:-1
position: 17009
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16620-17009:-1:exon

CDG60_RS00110
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2004650
locus tag: CDG60_RS00110
old locus tag: CDG60_00110
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016803255.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNSTRTVAVRLDNQVAQEYERLAQLKGDKLGTYLRDLLTNNLQMASIERQVSRIETLVNDFEKDINRSLDQFTQANSLNENLLGDLGEIYMFQIGILMKLQTEKYEIRGMQAKGRSHAKASYLKGKNHE
SIO_010081: CDG60_RS00110
subclass of: SO_0000673
so part of: CDG60_RS00110
location: complement(16620..17009)
location: region:16620-17009:-1
so has part: feature:16620-17009:-1:exon

WP_087514418.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16620-17009:-1:exon