Deinococcus aetherius strain ST0316 plasmid pDAETH-4, complete sequence.
Bacteria; Deinococcota; Deinococci; Deinococcales; Deinococcaceae; Deinococcus.
Complete Genome Sequence of the Radioresistant Bacterium Deinococcus aetherius ST0316, Isolated from the Air Dust collected in Lower Stratosphere above Japan
Submitted (29-JUL-2022) Contact:Katsuya Satoh National Institutes for Quantum Science and Technology, Department of Radiation-Applied Biology Research, Takasaki Advanced Radiation Research Institute, Quantum Beam Science Research Directorate; Watanuki 1233, Takasaki 370-1292, Japan
REFSEQ INFORMATION: The reference sequence is identical to\nAP026564.1.\nAnnotated by DFAST https://dfast.ddbj.nig.ac.jp/\n\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Unicycler v. 0.4.7\nGenome Coverage :: 648x\nSequencing Technology :: Nanopore GridION X5; DNBSEQ-G400\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 11/07/2022 17:37:47\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 4,905\nCDSs (total) :: 4,832\nGenes (coding) :: 4,720\nCDSs (with protein) :: 4,720\nGenes (RNA) :: 73\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 58\nncRNAs :: 3\nPseudo Genes (total) :: 112\nCDSs (without protein) :: 112\nPseudo Genes (ambiguous residues) :: 0 of 112\nPseudo Genes (frameshifted) :: 39 of 112\nPseudo Genes (incomplete) :: 80 of 112\nPseudo Genes (internal stop) :: 18 of 112\nPseudo Genes (multiple problems) :: 23 of 112\nCRISPR Arrays :: 7\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF024098.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013556200.1
COORDINATES: protein motif:HMM:NF013400.2
COORDINATES: protein motif:HMM:NF021648.2
COORDINATES: protein motif:HMM:TIGR01453.1
COORDINATES: similar to AA sequence:RefSeq:WP_019588209.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_014686829.1
COORDINATES: similar to AA sequence:RefSeq:WP_014686830.1
COORDINATES: similar to AA sequence:RefSeq:WP_014686831.1
GO:0044423 - virion component [Evidence IEA]
GO:0005198 - structural molecule activity [Evidence IEA]
GO:0019068 - virion assembly [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014686832.1
COORDINATES: similar to AA sequence:RefSeq:WP_014686833.1
COORDINATES: protein motif:HMM:NF036421.2
COORDINATES: protein motif:HMM:NF013677.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: protein motif:HMM:NF012376.2
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013793.2
COORDINATES: similar to AA sequence:RefSeq:WP_020409836.1
COORDINATES: protein motif:HMM:NF016876.2
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: protein motif:HMM:NF024784.2
HNH endonuclease signature motif containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019587700.1
COORDINATES: protein motif:HMM:NF015736.2
DnaB-like helicase C-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF024949.2
COORDINATES: protein motif:HMM:NF013540.2
COORDINATES: protein motif:HMM:NF017885.2
MarR family winged helix-turn-helix transcriptional regulator