Deinococcus aetherius strain ST0316 plasmid pDAETH-2, complete sequence.
Bacteria; Deinococcota; Deinococci; Deinococcales; Deinococcaceae; Deinococcus.
Complete Genome Sequence of the Radioresistant Bacterium Deinococcus aetherius ST0316, Isolated from the Air Dust collected in Lower Stratosphere above Japan
Submitted (29-JUL-2022) Contact:Katsuya Satoh National Institutes for Quantum Science and Technology, Department of Radiation-Applied Biology Research, Takasaki Advanced Radiation Research Institute, Quantum Beam Science Research Directorate; Watanuki 1233, Takasaki 370-1292, Japan
REFSEQ INFORMATION: The reference sequence is identical to\nAP026562.1.\nAnnotated by DFAST https://dfast.ddbj.nig.ac.jp/\n\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Unicycler v. 0.4.7\nGenome Coverage :: 648x\nSequencing Technology :: Nanopore GridION X5; DNBSEQ-G400\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 11/07/2022 17:37:47\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 4,905\nCDSs (total) :: 4,832\nGenes (coding) :: 4,720\nCDSs (with protein) :: 4,720\nGenes (RNA) :: 73\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 58\nncRNAs :: 3\nPseudo Genes (total) :: 112\nCDSs (without protein) :: 112\nPseudo Genes (ambiguous residues) :: 0 of 112\nPseudo Genes (frameshifted) :: 39 of 112\nPseudo Genes (incomplete) :: 80 of 112\nPseudo Genes (internal stop) :: 18 of 112\nPseudo Genes (multiple problems) :: 23 of 112\nCRISPR Arrays :: 7\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_014695641.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013015053.1
sugar ABC transporter substrate-binding protein
COORDINATES: protein motif:HMM:TIGR00254.1
sensor domain-containing diguanylate cyclase
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF012711.2
COORDINATES: similar to AA sequence:RefSeq:WP_019586931.1
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_015231394.1
COORDINATES: similar to AA sequence:RefSeq:WP_019011989.1
COORDINATES: protein motif:HMM:NF012655.2
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_019008447.1
COORDINATES: similar to AA sequence:RefSeq:WP_019586711.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF013714.2
COORDINATES: protein motif:HMM:NF012707.2
transporter substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018548890.1
substrate-binding domain-containing protein
COORDINATES: protein motif:HMM:NF024589.2
BTAD domain-containing putative transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_019588546.1
COORDINATES: similar to AA sequence:RefSeq:WP_019588545.1
COORDINATES: similar to AA sequence:RefSeq:WP_019009774.1
COORDINATES: protein motif:HMM:NF019310.2
COORDINATES: protein motif:HMM:NF015649.2
COORDINATES: protein motif:HMM:NF017206.2
COORDINATES: protein motif:HMM:NF012417.2
COORDINATES: protein motif:HMM:TIGR02608.1
COORDINATES: similar to AA sequence:RefSeq:WP_015236247.1
GO:0005507 - copper ion binding [Evidence IEA]
multicopper oxidase domain-containing protein
carboxypeptidase-like regulatory domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019586621.1
COORDINATES: protein motif:HMM:NF024816.2
COORDINATES: similar to AA sequence:RefSeq:WP_019012107.1
COORDINATES: similar to AA sequence:RefSeq:WP_019587836.1
COORDINATES: similar to AA sequence:RefSeq:WP_019587837.1
carboxypeptidase regulatory-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019586626.1
COORDINATES: similar to AA sequence:RefSeq:WP_015236215.1
COORDINATES: protein motif:HMM:NF014476.2
COORDINATES: protein motif:HMM:NF033550.5
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012695114.1
COORDINATES: similar to AA sequence:RefSeq:WP_019008496.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012695117.1
COORDINATES: similar to AA sequence:RefSeq:WP_015235160.1
COORDINATES: similar to AA sequence:RefSeq:WP_012695107.1
COORDINATES: similar to AA sequence:RefSeq:WP_015231545.1
COORDINATES: similar to AA sequence:RefSeq:WP_013177630.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013098.2
COORDINATES: similar to AA sequence:RefSeq:WP_017829645.1
COORDINATES: similar to AA sequence:RefSeq:WP_013530052.1
COORDINATES: similar to AA sequence:RefSeq:WP_020077520.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
LLM class flavin-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_016861854.1
COORDINATES: similar to AA sequence:RefSeq:WP_019586663.1
COORDINATES: similar to AA sequence:RefSeq:WP_019586664.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018115997.1
COORDINATES: similar to AA sequence:RefSeq:WP_015231570.1
GO:0008677 - 2-dehydropantoate 2-reductase activity [Evidence IEA]
GO:0015940 - pantothenate biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019586667.1
COORDINATES: similar to AA sequence:RefSeq:WP_014684186.1
COORDINATES: similar to AA sequence:RefSeq:WP_019586669.1
COORDINATES: similar to AA sequence:RefSeq:WP_014290451.1
COORDINATES: similar to AA sequence:RefSeq:WP_019586671.1
COORDINATES: similar to AA sequence:RefSeq:WP_019586672.1
COORDINATES: similar to AA sequence:RefSeq:WP_019586673.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_012692300.1
zinc-dependent alcohol dehydrogenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_019586954.1
COORDINATES: protein motif:HMM:TIGR00229.1
COORDINATES: protein motif:HMM:NF014376.2
COORDINATES: similar to AA sequence:RefSeq:WP_019588547.1
COORDINATES: similar to AA sequence:RefSeq:WP_015231403.1
COORDINATES: similar to AA sequence:RefSeq:WP_012919146.1
COORDINATES: similar to AA sequence:RefSeq:WP_010550723.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012694598.1
COORDINATES: similar to AA sequence:RefSeq:WP_011525879.1
GO:0005515 - protein binding [Evidence IEA]; GO:0004856 - xylulokinase activity [Evidence IEA]
GO:0042732 - D-xylose metabolic process [Evidence IEA]; GO:0005997 - xylulose metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011525878.1
GO:0009045 - xylose isomerase activity [Evidence IEA]
GO:0042732 - D-xylose metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF012772.2
COORDINATES: similar to AA sequence:RefSeq:WP_011554459.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF014069.2
COORDINATES: similar to AA sequence:RefSeq:WP_005440368.1
COORDINATES: similar to AA sequence:RefSeq:WP_012695277.1
COORDINATES: protein motif:HMM:NF013775.2
aminoglycoside phosphotransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_015933337.1
COORDINATES: similar to AA sequence:RefSeq:WP_012827226.1
COORDINATES: similar to AA sequence:RefSeq:WP_015792827.1
COORDINATES: similar to AA sequence:RefSeq:WP_012694969.1
DeoR/GlpR family DNA-binding transcription regulator
COORDINATES: similar to AA sequence:RefSeq:WP_012694975.1
COORDINATES: similar to AA sequence:RefSeq:WP_012694974.1
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
GO:0019516 - lactate oxidation [Evidence IEA]
LutB/LldF family L-lactate oxidation iron-sulfur protein
COORDINATES: similar to AA sequence:RefSeq:WP_012694973.1
COORDINATES: similar to AA sequence:RefSeq:WP_011525603.1
COORDINATES: similar to AA sequence:RefSeq:WP_011525602.1
bifunctional aldolase/short-chain dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_011525601.1
GO:0008740 - L-rhamnose isomerase activity [Evidence IEA]
GO:0019299 - rhamnose metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF019826.2
COORDINATES: similar to AA sequence:RefSeq:WP_014676587.1
COORDINATES: similar to AA sequence:RefSeq:WP_011525598.1
sugar ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_011525597.1
COORDINATES: similar to AA sequence:RefSeq:WP_011525596.1
COORDINATES: similar to AA sequence:RefSeq:WP_012694963.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0009897 - external side of plasma membrane [Evidence IEA]; GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]
GO:0033296 - rhamnose binding [Evidence IEA]; GO:0015153 - rhamnose transmembrane transporter activity [Evidence IEA]
GO:0015762 - rhamnose transmembrane transport [Evidence IEA]
rhamnose ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_019586598.1
GO:0020037 - heme binding [Evidence IEA]; GO:0005506 - iron ion binding [Evidence IEA]; GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019587706.1
COORDINATES: similar to AA sequence:RefSeq:WP_013159622.1
COORDINATES: similar to AA sequence:RefSeq:WP_008918288.1
COORDINATES: similar to AA sequence:RefSeq:WP_006446593.1
COORDINATES: similar to AA sequence:RefSeq:WP_014695822.1
COORDINATES: protein motif:HMM:NF012798.2
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: protein motif:HMM:NF012296.2
COORDINATES: similar to AA sequence:RefSeq:WP_019009214.1
NAD-dependent succinate-semialdehyde dehydrogenase
COORDINATES: protein motif:HMM:NF013223.2
GO:0006811 - ion transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019011721.1
type II toxin-antitoxin system VapC family toxin
COORDINATES: protein motif:HMM:TIGR01439.1
AbrB/MazE/SpoVT family DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015234747.1
COORDINATES: similar to AA sequence:RefSeq:WP_019010774.1
COORDINATES: similar to AA sequence:RefSeq:WP_019010775.1
branched-chain amino acid ABC transporter permease
COORDINATES: similar to AA sequence:RefSeq:WP_019010776.1
COORDINATES: similar to AA sequence:RefSeq:WP_012693258.1
COORDINATES: similar to AA sequence:RefSeq:WP_012693259.1
COORDINATES: similar to AA sequence:RefSeq:WP_008600839.1
GO:0003684 - damaged DNA binding [Evidence IEA]; GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003472554.1
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019586889.1
COORDINATES: similar to AA sequence:RefSeq:WP_019586580.1
COORDINATES: protein motif:HMM:NF013757.2
COORDINATES: protein motif:HMM:NF014567.2
HAMP domain-containing sensor histidine kinase
COORDINATES: similar to AA sequence:RefSeq:WP_013555400.1
COORDINATES: protein motif:HMM:NF023431.2
COORDINATES: similar to AA sequence:RefSeq:WP_014445445.1
COORDINATES: similar to AA sequence:RefSeq:WP_020597544.1
COORDINATES: similar to AA sequence:RefSeq:WP_013177417.1
GO:0004397 - histidine ammonia-lyase activity [Evidence IEA]
GO:0006548 - histidine catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019008824.1
GO:0050480 - imidazolonepropionase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019008825.1
GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011173599.1
COORDINATES: similar to AA sequence:RefSeq:WP_011525837.1
GO:0016153 - urocanate hydratase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010889412.1
COORDINATES: protein motif:HMM:NF017758.2
COORDINATES: protein motif:HMM:NF013696.2
COORDINATES: similar to AA sequence:RefSeq:WP_003101291.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF015431.2
LysR family transcriptional regulator substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_015235055.1
COORDINATES: similar to AA sequence:RefSeq:WP_015235054.1
COORDINATES: similar to AA sequence:RefSeq:WP_013556029.1
COORDINATES: protein motif:HMM:NF014505.2
type II toxin-antitoxin system PemK/MazF family toxin
COORDINATES: protein motif:HMM:NF024835.2
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_019011979.1
glycoside hydrolase family 3 N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019009277.1
COORDINATES: similar to AA sequence:RefSeq:WP_019011453.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009224607.1
COORDINATES: similar to AA sequence:RefSeq:WP_013557187.1
COORDINATES: similar to AA sequence:RefSeq:WP_019586048.1
tyrosine-protein kinase domain-containing protein
COORDINATES: protein motif:HMM:NF036578.2
alpha-L-rhamnosidase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019586608.1
COORDINATES: similar to AA sequence:RefSeq:WP_019011173.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012695104.1
benzoate/H(+) symporter BenE family transporter
COORDINATES: protein motif:HMM:NF012235.2
COORDINATES: protein motif:HMM:NF012738.2
COORDINATES: protein motif:HMM:NF008633.0
COORDINATES: similar to AA sequence:RefSeq:WP_012092352.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_005307445.1
GO:0008703 - 5-amino-6-(5-phosphoribosylamino)uracil reductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF018663.2
COORDINATES: similar to AA sequence:RefSeq:WP_016932371.1
DNA-directed RNA polymerase subunit alpha C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018470076.1
COORDINATES: similar to AA sequence:RefSeq:WP_019010208.1
GO:0005886 - plasma membrane [Evidence IEA]
GO:0009410 - response to xenobiotic stimulus [Evidence IEA]; GO:0006855 - xenobiotic transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015231426.1
COORDINATES: similar to AA sequence:RefSeq:WP_015231424.1
COORDINATES: similar to AA sequence:RefSeq:WP_019588435.1
COORDINATES: similar to AA sequence:RefSeq:WP_019588441.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0003678 - DNA helicase activity [Evidence IEA]
GO:0032508 - DNA duplex unwinding [Evidence IEA]; GO:0006260 - DNA replication [Evidence IEA]
exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase
COORDINATES: similar to AA sequence:RefSeq:WP_015154402.1
WecB/TagA/CpsF family glycosyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_015154403.1
NAD-dependent epimerase/dehydratase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013275333.1
COORDINATES: protein motif:HMM:NF025025.2
COORDINATES: protein motif:HMM:NF016800.2
COORDINATES: similar to AA sequence:RefSeq:WP_015180659.1
COORDINATES: similar to AA sequence:RefSeq:WP_014432827.1
COORDINATES: similar to AA sequence:RefSeq:WP_019011341.1
UDP-glucose/GDP-mannose dehydrogenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012695059.1
COORDINATES: similar to AA sequence:RefSeq:WP_010976093.1
COORDINATES: protein motif:HMM:NF014522.2
COORDINATES: similar to AA sequence:RefSeq:WP_013015760.1
COORDINATES: protein motif:HMM:NF017088.2
COORDINATES: similar to AA sequence:RefSeq:WP_017870588.1
COORDINATES: similar to AA sequence:RefSeq:WP_019011947.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
DDE-type integrase/transposase/recombinase
COORDINATES: protein motif:HMM:NF025930.2
COORDINATES: similar to AA sequence:RefSeq:WP_019587876.1
COORDINATES: protein motif:HMM:NF012742.2
LacI family DNA-binding transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_013555428.1
COORDINATES: similar to AA sequence:RefSeq:WP_015235703.1
COORDINATES: protein motif:HMM:NF024808.2
COORDINATES: similar to AA sequence:RefSeq:WP_015234647.1
COORDINATES: similar to AA sequence:RefSeq:WP_015234648.1
GO:0008741 - ribulokinase activity [Evidence IEA]
GO:0019568 - arabinose catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015234649.1
COORDINATES: similar to AA sequence:RefSeq:WP_015234650.1
GO:0008733 - L-arabinose isomerase activity [Evidence IEA]
GO:0005996 - monosaccharide metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013555417.1
COORDINATES: similar to AA sequence:RefSeq:WP_015234652.1
alcohol dehydrogenase catalytic domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018181125.1
COORDINATES: similar to AA sequence:RefSeq:WP_013555414.1
COORDINATES: protein motif:HMM:NF018647.2
alpha-L-arabinofuranosidase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015718296.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
VapC toxin family PIN domain ribonuclease
COORDINATES: similar to AA sequence:RefSeq:WP_013616028.1
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF019109.2
COORDINATES: protein motif:HMM:NF018449.2
COORDINATES: similar to AA sequence:RefSeq:WP_014695609.1
COORDINATES: similar to AA sequence:RefSeq:WP_019586645.1
COORDINATES: similar to AA sequence:RefSeq:WP_013159720.1
COORDINATES: similar to AA sequence:RefSeq:WP_013159719.1
COORDINATES: similar to AA sequence:RefSeq:WP_020388041.1
COORDINATES: similar to AA sequence:RefSeq:WP_012173247.1
COORDINATES: protein motif:HMM:NF013245.2
COORDINATES: similar to AA sequence:RefSeq:WP_013385369.1
COORDINATES: protein motif:HMM:TIGR03075.1
PQQ-dependent dehydrogenase, methanol/ethanol family
COORDINATES: protein motif:HMM:NF012575.2
GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013959249.1
COORDINATES: protein motif:HMM:NF013124.2
LuxR C-terminal-related transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_018467505.1
COORDINATES: similar to AA sequence:RefSeq:WP_012259250.1
COORDINATES: protein motif:HMM:NF013998.2
COORDINATES: protein motif:HMM:NF012321.2
COORDINATES: similar to AA sequence:RefSeq:WP_018269004.1
COORDINATES: similar to AA sequence:RefSeq:WP_012694283.1
GO:0003824 - catalytic activity [Evidence IEA]
GO:0005992 - trehalose biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011529210.1
GO:0004805 - trehalose-phosphatase activity [Evidence IEA]
COORDINATES: nucleotide motif:Rfam:14.4:RF00177
Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: nucleotide motif:Rfam:14.4:RF02541
COORDINATES: nucleotide motif:Rfam:14.4:RF00001
COORDINATES: similar to AA sequence:RefSeq:WP_011530478.1
GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]
COORDINATES: protein motif:HMM:NF012862.2
COORDINATES: protein motif:HMM:NF020950.2
COORDINATES: protein motif:HMM:NF012340.2
COORDINATES: protein motif:HMM:NF024602.2
COORDINATES: similar to AA sequence:RefSeq:WP_015347200.1
COORDINATES: protein motif:HMM:NF019013.2
COORDINATES: similar to AA sequence:RefSeq:WP_013622901.1
COORDINATES: similar to AA sequence:RefSeq:WP_019586128.1
COORDINATES: similar to AA sequence:RefSeq:WP_019009586.1
COORDINATES: similar to AA sequence:RefSeq:WP_011580947.1
COORDINATES: similar to AA sequence:RefSeq:WP_010888729.1
COORDINATES: similar to AA sequence:RefSeq:WP_019010743.1
COORDINATES: protein motif:HMM:NF014566.2
GO:0004222 - metalloendopeptidase activity [Evidence IEA]
GO:0071586 - CAAX-box protein processing [Evidence IEA]
CPBP family glutamic-type intramembrane protease
COORDINATES: similar to AA sequence:RefSeq:NP_464503.1
GO:0004084 - branched-chain-amino-acid transaminase activity [Evidence IEA]
GO:0009081 - branched-chain amino acid metabolic process [Evidence IEA]
branched-chain amino acid aminotransferase
COORDINATES: similar to AA sequence:RefSeq:WP_019586736.1
COORDINATES: protein motif:HMM:NF013793.2
COORDINATES: protein motif:HMM:TIGR00180.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_006195099.1
COORDINATES: similar to AA sequence:RefSeq:WP_012173426.1
COORDINATES: similar to AA sequence:RefSeq:WP_014695704.1
COORDINATES: similar to AA sequence:RefSeq:WP_019586628.1
COORDINATES: similar to AA sequence:RefSeq:WP_014695702.1
COORDINATES: similar to AA sequence:RefSeq:WP_019586630.1
COORDINATES: protein motif:HMM:NF021634.2
COORDINATES: protein motif:HMM:NF024676.2
COORDINATES: similar to AA sequence:RefSeq:WP_003189423.1
COORDINATES: similar to AA sequence:RefSeq:WP_013557374.1
GO:0005515 - protein binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF013753.2
COORDINATES: similar to AA sequence:RefSeq:WP_019587503.1
transcriptional regulator/antitoxin MazE
COORDINATES: similar to AA sequence:RefSeq:WP_012031924.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612350.1
COORDINATES: similar to AA sequence:RefSeq:WP_012173259.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: protein motif:HMM:NF012371.2
COORDINATES: protein motif:HMM:NF013677.2
COORDINATES: protein motif:HMM:NF033516.0
COORDINATES: similar to AA sequence:RefSeq:WP_014684172.1
GO:0016151 - nickel cation binding [Evidence IEA]
GO:0006807 - nitrogen compound metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014684171.1
GO:0046872 - metal ion binding [Evidence IEA]; GO:0016530 - metallochaperone activity [Evidence IEA]
GO:0019627 - urea metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF013858.2
COORDINATES: similar to AA sequence:RefSeq:WP_010889573.1
COORDINATES: similar to AA sequence:RefSeq:WP_014684167.1
GO:0016530 - metallochaperone activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
GO:0036211 - protein modification process [Evidence IEA]
hydrogenase nickel incorporation protein HypB
COORDINATES: similar to AA sequence:RefSeq:WP_014684168.1
GO:0051604 - protein maturation [Evidence IEA]
hydrogenase/urease maturation nickel metallochaperone HypA
COORDINATES: similar to AA sequence:RefSeq:WP_010889577.1
GO:0016151 - nickel cation binding [Evidence IEA]; GO:0009039 - urease activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010889578.1
GO:0043419 - urea catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015637311.1
COORDINATES: similar to AA sequence:RefSeq:WP_013158226.1
COORDINATES: similar to AA sequence:RefSeq:WP_015234003.1
COORDINATES: similar to AA sequence:RefSeq:WP_013013723.1
COORDINATES: similar to AA sequence:RefSeq:WP_014684557.1
BMP family ABC transporter substrate-binding protein
COORDINATES: protein motif:HMM:NF025126.2
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF017416.2
COORDINATES: protein motif:HMM:NF015448.2
GO:0004826 - phenylalanine-tRNA ligase activity [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]
phenylalanine--tRNA ligase beta subunit-related protein
COORDINATES: protein motif:HMM:NF013088.2
COORDINATES: protein motif:HMM:NF025079.2
COORDINATES: similar to AA sequence:RefSeq:WP_011798083.1
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF024260.2
COORDINATES: protein motif:HMM:NF024803.2
COORDINATES: similar to AA sequence:RefSeq:WP_019008509.1
COORDINATES: similar to AA sequence:RefSeq:WP_020170677.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611721.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014669942.1
COORDINATES: similar to AA sequence:RefSeq:WP_014146425.1
COORDINATES: similar to AA sequence:RefSeq:WP_013622932.1
GO:0016799 - hydrolase activity, hydrolyzing N-glycosyl compounds [Evidence IEA]; GO:0004844 - uracil DNA N-glycosylase activity [Evidence IEA]
GO:0006284 - base-excision repair [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014685195.1
COORDINATES: similar to AA sequence:RefSeq:WP_020153659.1
GO:0004180 - carboxypeptidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024642.2
COORDINATES: similar to AA sequence:RefSeq:WP_014682853.1
DNA polymerase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019011722.1
GO:0004519 - endonuclease activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019586268.1
COORDINATES: similar to AA sequence:RefSeq:WP_011529623.1
COORDINATES: similar to AA sequence:RefSeq:WP_013557431.1
COORDINATES: protein motif:HMM:NF012792.2
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013080.2
GO:0008484 - sulfuric ester hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016423336.1
COORDINATES: similar to AA sequence:RefSeq:WP_020576302.1
COORDINATES: similar to AA sequence:RefSeq:WP_015234535.1
COORDINATES: protein motif:HMM:NF013625.2
COORDINATES: similar to AA sequence:RefSeq:WP_012502525.1
COORDINATES: similar to AA sequence:RefSeq:WP_012173261.1
COORDINATES: similar to AA sequence:RefSeq:WP_011526044.1
GO:0015036 - disulfide oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019585503.1
GGDEF domain-containing phosphodiesterase
COORDINATES: similar to AA sequence:RefSeq:WP_019587700.1
COORDINATES: protein motif:HMM:NF012780.2
COORDINATES: protein motif:HMM:NF024883.2
COORDINATES: similar to AA sequence:RefSeq:WP_012188442.1
COORDINATES: similar to AA sequence:RefSeq:WP_018152985.1
RusA family crossover junction endodeoxyribonuclease
COORDINATES: protein motif:HMM:NF014051.2
COORDINATES: similar to AA sequence:RefSeq:WP_015889568.1
COORDINATES: similar to AA sequence:RefSeq:WP_014180919.1
COORDINATES: protein motif:HMM:TIGR01353.1
GO:0008832 - dGTPase activity [Evidence IEA]
GO:0015949 - nucleobase-containing small molecule interconversion [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019586585.1
COORDINATES: protein motif:HMM:NF019604.2
COORDINATES: similar to AA sequence:RefSeq:WP_019586024.1
CoA-acylating methylmalonate-semialdehyde dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_019586026.1
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO:0008483 - transaminase activity [Evidence IEA]
aminotransferase class III-fold pyridoxal phosphate-dependent enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_013158302.1
COORDINATES: similar to AA sequence:RefSeq:WP_009066116.1
COORDINATES: protein motif:HMM:NF024819.2
COORDINATES: similar to AA sequence:RefSeq:WP_019586029.1
COORDINATES: similar to AA sequence:RefSeq:WP_019586030.1
COORDINATES: similar to AA sequence:RefSeq:WP_019586031.1
COORDINATES: similar to AA sequence:RefSeq:WP_015236064.1
COORDINATES: similar to AA sequence:RefSeq:WP_014684047.1
COORDINATES: similar to AA sequence:RefSeq:WP_019586034.1
GO:0004157 - dihydropyrimidinase activity [Evidence IEA]
GO:0008152 - metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF013970.2
COORDINATES: similar to AA sequence:RefSeq:WP_013014145.1
GO:0017113 - dihydropyrimidine dehydrogenase (NADP+) activity [Evidence IEA]
GO:0006210 - thymine catabolic process [Evidence IEA]; GO:0006212 - uracil catabolic process [Evidence IEA]
NAD-dependent dihydropyrimidine dehydrogenase subunit PreA
COORDINATES: similar to AA sequence:RefSeq:WP_019586036.1
COORDINATES: similar to AA sequence:RefSeq:WP_018467152.1
COORDINATES: similar to AA sequence:RefSeq:WP_019587101.1
COORDINATES: similar to AA sequence:RefSeq:WP_015235959.1
GO:0005575 - cellular_component [Evidence IEA]
GO:0001727 - lipid kinase activity [Evidence IEA]
GO:0008150 - biological_process [Evidence IEA]
COORDINATES: protein motif:HMM:NF021637.2
COORDINATES: similar to AA sequence:RefSeq:WP_019011982.1
COORDINATES: similar to AA sequence:RefSeq:WP_012694859.1
COORDINATES: protein motif:HMM:NF013508.2
COORDINATES: similar to AA sequence:RefSeq:WP_014695677.1
COORDINATES: similar to AA sequence:RefSeq:WP_011525963.1
COORDINATES: similar to AA sequence:RefSeq:WP_019587843.1
GO:0043546 - molybdopterin cofactor binding [Evidence IEA]; GO:0004854 - xanthine dehydrogenase activity [Evidence IEA]
GO:0009115 - xanthine catabolic process [Evidence IEA]
xanthine dehydrogenase molybdopterin binding subunit
COORDINATES: similar to AA sequence:RefSeq:WP_019587844.1
GO:0043546 - molybdopterin cofactor binding [Evidence IEA]
GO:0065003 - protein-containing complex assembly [Evidence IEA]; GO:0009115 - xanthine catabolic process [Evidence IEA]
xanthine dehydrogenase accessory protein XdhC
COORDINATES: similar to AA sequence:RefSeq:WP_011525960.1
GO:0008892 - guanine deaminase activity [Evidence IEA]
GO:0006147 - guanine catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011525959.1
COORDINATES: similar to AA sequence:RefSeq:WP_019586412.1
COORDINATES: similar to AA sequence:RefSeq:WP_014695636.1
GO:0071522 - ureidoglycine aminohydrolase activity [Evidence IEA]
GO:0010136 - ureide catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011525957.1
COORDINATES: similar to AA sequence:RefSeq:WP_019587853.1
GO:0016813 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019587854.1
COORDINATES: similar to AA sequence:RefSeq:WP_002924363.1
GO:0009028 - tartronate-semialdehyde synthase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011525953.1
COORDINATES: similar to AA sequence:RefSeq:WP_011525952.1
GO:0008679 - 2-hydroxy-3-oxopropionate reductase activity [Evidence IEA]
GO:0019580 - galactarate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011525951.1
COORDINATES: similar to AA sequence:RefSeq:WP_014695629.1
GO:0004474 - malate synthase activity [Evidence IEA]
GO:0006099 - tricarboxylic acid cycle [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010887799.1
COORDINATES: similar to AA sequence:RefSeq:WP_011526031.1
COORDINATES: similar to AA sequence:RefSeq:WP_011525967.1
nucleobase:cation symporter-2 family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011525966.1
GO:0019628 - urate catabolic process [Evidence IEA]
2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase
COORDINATES: similar to AA sequence:RefSeq:WP_011525965.1
GO:0004846 - urate oxidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010887804.1
COORDINATES: protein motif:HMM:NF024242.2
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019586512.1
COORDINATES: similar to AA sequence:RefSeq:WP_017591741.1
COORDINATES: protein motif:HMM:NF024989.2
COORDINATES: protein motif:HMM:NF018101.2
COORDINATES: similar to AA sequence:RefSeq:WP_014686576.1
COORDINATES: protein motif:HMM:NF016268.2
COORDINATES: protein motif:HMM:NF013122.2
COORDINATES: similar to AA sequence:RefSeq:WP_010673340.1
GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012694743.1
COORDINATES: similar to AA sequence:RefSeq:WP_017870256.1
heavy-metal-associated domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011173741.1
metal-sensitive transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_019587610.1
COORDINATES: protein motif:HMM:NF022182.2
COORDINATES: similar to AA sequence:RefSeq:WP_011525909.1
COORDINATES: similar to AA sequence:RefSeq:WP_013555244.1
COORDINATES: similar to AA sequence:RefSeq:WP_019587076.1
COORDINATES: similar to AA sequence:RefSeq:WP_019587077.1
COORDINATES: similar to AA sequence:RefSeq:WP_017870342.1
ExeM/NucH family extracellular endonuclease
COORDINATES: similar to AA sequence:RefSeq:WP_019586231.1
COORDINATES: similar to AA sequence:RefSeq:WP_019586230.1
COORDINATES: similar to AA sequence:RefSeq:WP_019586229.1
COORDINATES: similar to AA sequence:RefSeq:WP_019586228.1
COORDINATES: similar to AA sequence:RefSeq:WP_015235701.1
glycoside hydrolase family 2 TIM barrel-domain containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013177494.1
GO:0016773 - phosphotransferase activity, alcohol group as acceptor [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011287821.1
COORDINATES: similar to AA sequence:RefSeq:WP_012693755.1
COORDINATES: similar to AA sequence:RefSeq:WP_019587270.1
GO:0046677 - response to antibiotic [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002609334.1
COORDINATES: similar to AA sequence:RefSeq:WP_019009411.1
four-helix bundle copper-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_019585218.1
COORDINATES: similar to AA sequence:RefSeq:WP_019587473.1
COORDINATES: protein motif:HMM:NF025006.2
COORDINATES: similar to AA sequence:RefSeq:WP_019586307.1
COORDINATES: similar to AA sequence:RefSeq:WP_002730539.1
COORDINATES: protein motif:HMM:NF038032.1
COORDINATES: similar to AA sequence:RefSeq:WP_014278973.1
COORDINATES: similar to AA sequence:RefSeq:WP_020047701.1
COORDINATES: protein motif:HMM:NF015000.2
COORDINATES: similar to AA sequence:RefSeq:WP_019587142.1
COORDINATES: similar to AA sequence:RefSeq:WP_019588717.1
saccharopine dehydrogenase NADP-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018465006.1
glycoside hydrolase family 38 C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019588485.1
COORDINATES: similar to AA sequence:RefSeq:WP_013015055.1