Shigella flexneri 2a str. 301 chromosome, complete genome.
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Shigella.
Genome sequence of Shigella flexneri 2a: insights into pathogenicity through comparison with genomes of Escherichia coli K12 and O157
Submitted (26-AUG-2011) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA
Submitted (03-AUG-2011) State Key Laboratory for Moleclular Virology and Genetic Engineering, Microbial Genome Center of Chinese Ministry of Public Health, 6 Rongjing Eastern Street, BDA, Beijing 100176, P.R.China
Submitted (06-DEC-2004) State Key Laboratory for Moleclular Virology and Genetic Engineering, Microbial Genome Center of Chinese Ministry of Public Health, 6 Rongjing Eastern Street, BDA, Beijing 100176, P.R.China
Submitted (21-MAY-2001) State Key Laboratory for Moleclular Virology and Genetic Engineering, Microbial Genome Center of Chinese Ministry of Public Health, 6 Rongjing Eastern Street, BDA, Beijing 100176, P.R.China
REVIEWED REFSEQ: This record has been curated by NCBI staff. The\nreference sequence is identical to AE005674.\n\nOn Aug 26, 2011 this sequence version replaced NC_004337.1.\nRefSeq Category: Reference Genome\n CLI: Clinical Isolate\n FGS: First Genome sequenced\nCOMPLETENESS: full length.
bifunctional aspartokinase I/homoserine dehydrogenase I
Similar to Escherichia coli K12 inner membrane transport protein gi: 1786188 (477 aa). BLAST with identity of 98% in 476 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
molybdenum cofactor biosynthesis protein MogA
bifunctional riboflavin kinase/FMN adenylyltransferase
4-hydroxy-3-methylbut-2-enyl diphosphate reductase
4-hydroxy-tetrahydrodipicolinate reductase
carbamoyl phosphate synthase small subunit
carbamoyl phosphate synthase large subunit
crotonobetainyl-CoA:carnitine CoA-transferase
L-carnitine/gamma-butyrobetaine antiporter
glutathione-regulated potassium-efflux system ancillary protein KefF
glutathione-regulated potassium-efflux system protein KefC
16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
4-hydroxythreonine-4-phosphate dehydrogenase
peptidyl-prolyl cis-trans isomerase SurA
LPS assembly outer membrane complex protein LptD
Similar to Escherichia coli K12 L-arabinose isomerase gi: 1786248 (501 aa). BLAST with identity of 98% in 499 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
DNA-binding transcriptional regulator AraC
thiamine ABC transporter ATP-binding subunit
thiamine ABC transporter substrate-binding subunit
3-isopropylmalate dehydratase small subunit
transcriptional activator for leuABCD operon
DNA-binding transcriptional regulator FruR
UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
phospho-N-acetylmuramoyl-pentapeptide- transferase
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase
UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
nucleoside triphosphate pyrophosphohydrolase
guanosine 5'-monophosphate oxidoreductase
'Similar to Escherichia coli K12 integral membrane protein involved in biogenesis of fimbriae, protein transport, DNA uptake gi: 1786296 (462 aa). BLAST with identity of 97% in 382 aa. This CDS contains deletion. The sequence has been checked and is believed to be correct.'
N-acetyl-anhydromuranmyl-L-alanine amidase
pyruvate dehydrogenase dihydrolipoyltransacetylase
Similar to Escherichia coli K12 membrane protein gi: 1786308 (618 aa). BLAST with identity of 97% in 617 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
3-methyl-2-oxobutanoate hydroxymethyltransferase
2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase
RNA polymerase-binding transcription factor
bifunctional glycosyl transferase/transpeptidase
iron-hydroxamate ABC transporter ATP-binding protein
iron-hydroxamate ABC transporter substrate-binding protein
iron-hydroxamate ABC transporter permease
glutamate-1-semialdehyde aminotransferase
iron-sulfur cluster insertion protein ErpA
5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase
'Similar to Escherichia coli O157:H7 regulator protein of D-galactarate, D-glucarate and D-glycerate metabolism ref: NP_308193.1 (385 aa). BLAST with identity of 99% in 392 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.'
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase
1-deoxy-D-xylulose 5-phosphate reductoisomerase
outer membrane protein assembly factor YaeT
UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase
acetyl-CoA carboxylase carboxyltransferase subunit alpha
copper homeostasis and adhesion lipoprotein
DL-methionine transporter substrate-binding protein
DL-methionine transporter ATP-binding protein
D,D-heptose 1,7-bisphosphate phosphatase
membrane-bound lytic murein transglycosylase D
insertion sequence element IS629 protein
Similar to Escherichia coli K12 flagellin structural protein gi: 1786572 (468 aa). BLAST with identity of 98% in 176 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct.
insertion sequence element IS600 protein
insertion sequence element IS600 transposase
taurine ABC transporter ATP-binding subunit
taurine ABC transporter substrate-binding subunit
Similar to Escherichia coli K12 conserved hypothetical protein gi: 1786500 (71 aa). BLAST with identity of 95% in 71 aa. This CDS ontains frameshift. The sequence has been checked and is believed to be correct.
Code: R; COG: COG0388; EC 3.5. amidase-type enzyme
Similar to Escherichia coli K12 lipoprotein gi: 1786421 (250 aa). BLAST with identity of 93% in 176 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct.
antitoxin of the YafO-YafN toxin-antitoxin system
xanthine-guanine phosphoribosyltransferase
DNA-binding transcriptional regulator Crl
Similar to Escherichia coli K12 conserved hypothetical protein gi: 1786594 (81 aa). BLAST with identity of 97% in 47 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct.
branched-chain amino acid ABC transporter
S-adenosylmethionine:tRNA ribosyltransferase-isomerase
nucleoside-specific channel-forming protein Tsx
bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase
transcription antitermination protein NusB
cytochrome o ubiquinol oxidase subunit IV
cytochrome o ubiquinol oxidase subunit III
Similar to Escherichia coli K12 cytochrome o ubiquinol oxidase subunit I gi: 1786634 (664 aa). BLAST with identity of 99% in 663 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
Similar to Escherichia coli K12 cytochrome o ubiquinol oxidase subunit II gi: 1786635 (316 aa). BLAST with identity of 98% in 165 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct.
insertion sequence element ISSfl4 transposase
ATP-dependent Clp protease proteolytic subunit
ATP-dependent protease ATP-binding subunit ClpX
transcriptional regulator HU subunit beta
thiamin pyrimidine pyrophosphate hydrolase
multidrug transporter membrane protein\\ATP-binding protein
4.5S RNA; component of ribonucleoprotein particle
Similar to Escherichia coli K12 transferase gi: 1786664 (184 aa). BLAST with identity of 98% in 183 aa. This CDS ontains frameshift. The sequence has been checked and is believed to be correct.
multidrug efflux system transporter AcrA
DNA-binding transcriptional repressor AcrR
DNA polymerase III subunits gamma and tau
bifunctional UDP-sugar hydrolase/5'-nucleotidase
DNA-binding transcriptional regulator CueR
ABC transporter ATP-binding protein YbbL
Similar to Escherichia coli K12 acyl-CoA thioesterase I; also functions as protease I gi: 1786702 (209 aa). BLAST with identity of 99% in 208 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
DNA-binding transcriptional activator AllS
DNA-binding transcriptional repressor AllR
5-(carboxyamino)imidazole ribonucleotide synthase
5-(carboxyamino)imidazole ribonucleotide mutase
bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase
'Similar to Escherichia coli K12 bacteriophage N4 receptor, outer membrane protein gi: 1786780 (991 aa). BLAST with identity of 97% in 989 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.'
DNA-binding transcriptional activator CusR
copper/silver efflux system outer membrane protein CusC
Similar to Shigella flexneri Bifunctional tail protein sp: Q9XJP3 (624 aa). BLAST with identity of 96% in 392 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct.
Similar to Escherichia coli K12 oxygen-insensitive NAD(P)H nitroreductase gi: 1786792 (218 aa). BLAST with identity of 98% in 663 aa. This CDS has been disrupted by insertion. The sequence has been checked and is believed to be correct.
enterobactin synthase multienzyme complex phosphopantetheinyltransferase
enterobactin/ferric enterobactin esterase
Similar to Escherichia coli K12 ferric enterobactin (enterochelin) transport gi: 1786802 (378 aa). BLAST with identity of 97% in 378 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
iron-enterobactin ABC transporter ATP-binding protein
iron-enterobactin ABC transporter permease
iron-enterobactin ABC transporter substrate-binding protein
'Similar to Escherichia coli K12 isochorismate hydroxymutase 2, enterochelin biosynthesis gi: 1786809 (392 aa). BLAST with identity of 97% in 392 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.'
2,3-dihydro-2,3-dihydroxybenzoate synthetase
2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase
Similar to Escherichia coli K12 conserved hypothetical protein gi: 1786817 (210 aa). BLAST with identity of 99% in 627 aa. This CDS has been disrupted by insertion. The sequence has been checked and is believed to be correct.
insertion sequence element IS911 integrase core domain-containing protein
insertion sequence element IS911 transposase InsN
Similar to Escherichia coli K12 conserved hypothetical protein gi: 1786818 (407 aa). BLAST with identity of 98% in 817 aa. This CDS has been disrupted by insertion. The sequence has been checked and is believed to be correct.
Similar to Escherichia coli K12 a membrane protein gi: 1786829 (488 aa). BLAST with identity of 99% in 487 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase
Similar to Escherichia coli K12 conserved hypothetical protein gi: 1786831 (184 aa). BLAST with identity of 98% in 183 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
molybdate transporter ATP-binding protein
molybdate transporter substrate-binding protein
DNA-binding transcriptional regulator ModE
molybdenum transport ATP-binding protein ModF
galactose-1-phosphate uridylyltransferase
2,3-bisphosphoglycerate-dependent phosphoglycerate mutase
peptidoglycan-associated outer membrane lipoprotein
cell envelope integrity inner membrane protein TolA
cytochrome d ubiquinol oxidase subunit 2
PTS system 2-O-a-mannosyl-D-glycerate specific transporter subunit IIABC
DNA-binding transcriptional repressor MngR
succinate dehydrogenase iron-sulfur subunit
succinate dehydrogenase flavoprotein subunit
succinate dehydrogenase cytochrome b556 small membrane subunit
succinate dehydrogenase cytochrome b556 subunit
Similar to Escherichia coli K12 conserved hypothetical protein gi: 1786935 (363 aa). BLAST with identity of 96% in 369 aa. This CDS contains deletion. The sequence has been checked and is believed to be correct.
Similar to Escherichia coli K12 carboxylase gi: 1786930 (311 aa). BLAST with identity of 97% in 310 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
'Similar to Escherichia coli K12 ATPase of high-affinity potassium transport system, B chain gi: 1786914 (683 aa). BLAST with identity of 97% in 683 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.'
Similar to Escherichia coli K12 sensor for high-affinity potassium transport system gi: 1786912 (895 aa). BLAST with identity of 97% in 894 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
Similar to Escherichia coli K12 regulator of kdp operon (transcriptional effector) gi: 1786911 (226 aa). BLAST with identity of 96% in 229 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
'Similar to Escherichia coli K12 ornithine decarboxylase isozyme, inducible gi: 1786909 (733 aa). BLAST with identity of 95% in 688 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.'
PTS system N-acetyl glucosamine specific transporter subunits IIABC
N-acetylglucosamine-6-phosphate deacetylase
nag (N-acetylglucosamine) operon transcriptional repressor
Similar to Escherichia coli K12 N-acetylglucosamine metabolism gi: 1786890 (251 aa). BLAST with identity of 97% in 251 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase
(dimethylallyl)adenosine tRNA methylthiotransferase
glutamate and aspartate transporter subunit
glutamate/aspartate transport system permease
glutamate/aspartate transport system permease GltK
glutamate/aspartate ABC transporter ATP-binding protein
Similar to Escherichia coli K12 dnaK protein gi: 1786870 (557 aa). BLAST with identity of 98% in 554 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
nicotinic acid mononucleotide adenylyltransferase
'Code: G; COG: COG0406; similar to Salmonella cobC, a phosphohistidine protein'
23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH
D-alanyl-D-alanine carboxypeptidase subunit A
chromosome condensation membrane protein
phospholipid:lipid A palmitoyltransferase
Similar to Escherichia coli K12 sequence similarity to Shigella regulator gi: 1786838 (227 aa). BLAST with identity of 98% in 113 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct.
DNA packaging protein of prophage; terminase small subunit
adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA
molybdenum cofactor biosynthesis protein A
molybdenum cofactor biosynthesis protein MoaC
molybdopterin guanine dinucleotide biosynthesis protein MoaE
Similar to Escherichia coli K12 outer membrane receptor for iron transport gi: 1787024 (761 aa). BLAST with identity of 98% in 1240 aa. This CDS has been disrupted by insertion. The sequence has been checked and is believed to be correct.
23S rRNA (adenine(1618)-N(6))-methyltransferase
glutamine ABC transporter ATP-binding protein
glutamine ABC transporter substrate-binding protein
DNA starvation/stationary phase protection protein Dps
pyruvate formate-lyase 2 activating enzyme
glutathione ABC transporter ATP-binding protein
glutathione ABC transporter substrate-binding protein GsiB
glutathione ABC transporter permease GsiC
glutathione ABC transporter permease GsiD
Similar to Escherichia coli K12 conserved hypothetical protein gi: 1787055 (783 aa). BLAST with identity of 98% in 775 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
ribosomal protein S12 methylthiotransferase
biofilm formation regulatory protein BssR
DNA-binding transcriptional repressor DeoR
multidrug efflux system translocase MdfA
ribosomal protein S6 modification protein
putrescine ABC transporter substrate-binding protein
putrescine ABC transporter ATP-binding protein
23S rRNA (uracil(747)-C(5))-methyltransferase RlmC
arginine ABC transporter substrate-binding protein
arginine transporter permease subunit ArtM
arginine transporter permease subunit ArtQ
arginine transporter ATP-binding subunit
nucleotide di-P-sugar epimerase or dehydratase
macrolide transporter ATP-binding /permease
stationary phase/starvation inducible regulatory protein CspD
ATP-dependent Clp protease adaptor protein ClpS
ATP-dependent Clp protease ATP-binding subunit
leucyl/phenylalanyl-tRNA--protein transferase
cysteine/glutathione ABC transporter membrane/ATP-binding protein
leucine-responsive transcriptional regulator
anaerobic dimethyl sulfoxide reductase subunit B
anaerobic dimethyl sulfoxide reductase subunit C
Similar to Escherichia coli K12 DNA replication factor ref: NP_415878.1 (248 aa). BLAST with identity of 92% in 248 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
DNA-binding transcriptional regulator DicC
Similar to Shigella flexneri IpaH9.8 gb: AAC23714.1 (545 aa). BLAST with identity of 64% in 604 aa. This CDS has been disrupted by insertion. The sequence has been checked and is believed to be correct.
Similar to Escherichia coli K12 transcriptional regulator LYSR-type gi: 1786984 (339 aa). BLAST with identity of 97% in 338 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
pyruvate formate lyase-activating enzyme 1
3-phosphoserine/phosphohydroxythreonine aminotransferase
3-phosphoshikimate 1-carboxyvinyltransferase
Similar to Escherichia coli K12 conserved hypothetical protein gi: 1787142 (781 aa). BLAST with identity of 98% in 779 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
3-deoxy-manno-octulosonate cytidylyltransferase
S-adenosyl-L-methionine-dependent methyltransferase
aliphatic sulfonates ABC transporter ATP-binding protein
taurine transport system permease-like protein
Ter macrodomain organizer matS-binding protein
Similar to Escherichia coli K12 conserved hypothetical protein gi: 1787193 (210 aa). BLAST with identity of 99% in 137 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct.
TMAO reductase system periplasmic protein TorT
DNA-binding transcriptional regulator TorR
trimethylamine N-oxide reductase cytochrome c-type subunit
Similar to Escherichia coli K12 trimethylamine N-oxide reductase subunit gi: 1787231 (849 aa). BLAST with identity of 98% in 847 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
Similar to Escherichia coli K12 part of trimethylamine-N-oxide oxidoreductase gi: 1787232 (200 aa). BLAST with identity of 97% in 459 aa. This CDS has been disrupted by insertion. The sequence has been checked and is believed to be correct.
glucose-1-phosphatase/inositol phosphatase
insertion sequence IS3A transposase InsF
Similar to Escherichia coli K12 conserved hypothetical protein gi: 1787266 (108 aa). BLAST with identity of 99% in 108 aa. This CDS ontains frameshift. The sequence has been checked and is believed to be correct.
Similar to Escherichia coli K12 dehydrogenase gi: 1787270 (326 aa). BLAST with identity of 99% in 326 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
'Similar to Escherichia coli K12 curli production assembly/transport component, 2nd curli operon gi: 1787274 (278 aa). BLAST with identity of 97% in 257 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.'
DNA-binding transcriptional regulator CsgD
'Similar to Escherichia coli K12 curlin major subunit, coiled surface structures; cryptic gi: 1787279 (152 aa). BLAST with identity of 98% in 532 aa. This CDS has been disrupted by insertion. The sequence has been checked and is believed to be correct.'
lipid A biosynthesis lauroyl acyltransferase
ribosomal-protein-S5-alanine N-acetyltransferase
flagella synthesis chaperone protein FlgN
flagellar basal body P-ring biosynthesis protein FlgA
'Similar to Escherichia coli K12 flagellar biosynthesis, cell-proximal portion of basal-body rod gi: 1787317 (252 aa). BLAST with identity of 96% in 251 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.'
flagellar rod assembly protein/muramidase FlgJ
'Similar to Escherichia coli K12 flagellar biosynthesis, hook-filament junction protein 1 gi: 1787323 (548 aa). BLAST with identity of 98% in 548 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.'
Similar to Escherichia coli K12 flagellar biosynthesis; hook-filament junction protein gi: 1787324 (318 aa). BLAST with identity of 94% in 314 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
PTS system glucose-specific transporter subunits IIBC
Similar to Escherichia coli K12 outer membrane receptor for ferric iron uptake gi: 1787344 (730 aa). BLAST with identity of 99% in 728 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
outer membrane-specific lipoprotein transporter subunit LolC
lipoprotein transporter ATP-binding subunit
outer membrane-specific lipoprotein transporter subunit LolE
spermidine/putrescine ABC transporter substrate-binding protein
spermidine/putrescine ABC transporter permease
putrescine/spermidine ABC transporter ATPase
Similar to Escherichia coli O157:H7 EDL933 capsid protein of prophage CP-933C ref: NP_287332.1 (385 aa). BLAST with identity of 98% in 402 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
head maturation protease of prophage CP-933C
DNA-binding transcriptional regulator PhoP
Similar to Escherichia coli O157:H7 ATP-binding component of a transport system ref: NP_311542.1 (1571 aa). BLAST with identity of 96% in 136 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct.
cell division topological specificity factor MinE
Similar to Escherichia coli K12 hemolysin E gi: 1787430 (306 aa). BLAST with identity of 98% in 302 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
D-amino acid dehydrogenase small subunit
'Similar to Escherichia coli O157:H7 EDL933 outer membrane receptor, probably tonB dependent ref: NP_287437.1 (656 aa). BLAST with identity of 98% in 659 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.'
ferric enterobactin ABC transporter ATP-binding protein
Similar to Escherichia coli K12 conserved hypothetical protein gi: 1787446 (147 aa). BLAST with identity of 99% in 147 aa. This CDS ontains frameshift. The sequence has been checked and is believed to be correct.
DNA-binding transcriptional regulator DhaR
4-diphosphocytidyl-2C-methyl-D-erythritol kinase
N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
2-dehydro-3-deoxyphosphooctonate aldolase
nitrate reductase 1 cytochrome b(NR) subunit gamma
potential protein location (hypothetical protein SF1231 [Shigella flexneri 2a str. 301]) that overlaps RNA (tRNA-Y)
UTP-glucose-1-phosphate uridylyltransferase
global DNA-binding transcriptional dual regulator H-NS
bifunctional acetaldehyde-CoA/alcohol dehydrogenase
oligopeptide ABC transporter substrate-binding protein OppA
oligopeptide ABC transporter permease OppB
oligopeptide ABC transporter permease OppC
oligopeptide ABC transporter ATP-binding protein OppD
oligopeptide ABC transporter ATP-binding protein OppF
insertion sequence element IS600 integrase core domain-containing protein
bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase
bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase
Similar to Escherichia coli K12 conserved hypothetical protein gi: 1787524 (292 aa). BLAST with identity of 98% in 279 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase
oxoacyl-(acyl carrier protein) reductase
Similar to Escherichia coli K12 conserved hypothetical protein gi: 1787541 (662 aa). BLAST with identity of 98% in 658 aa. This CDS contains deletion. The sequence has been checked and is believed to be correct.
antimicrobial peptide ABC transporter ATP-binding protein SapF
antimicrobial peptide ABC transporter ATP-binding protein
antimicrobial peptide ABC transporter permease SapC
antimicrobial peptide ABC transporter permease SapB
antimicrobial peptide ABC transporter substrate-binding protein SapA
gamma-glutamyl-gamma-aminobutyrate hydrolase
DNA-binding transcriptional repressor PuuR
gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase
DNA-binding transcriptional activator PspC
peripheral inner membrane phage-shock protein
Similar to Escherichia coli K12 polysaccharide hydrolase gi: 1787568 (569 aa). BLAST with identity of 93% in 823 aa. This CDS has been disrupted by insertion. The sequence has been checked and is believed to be correct.
Similar to Escherichia coli K12 transport periplasmic protein gi: 1787569 (431 aa). BLAST with identity of 95% in 428 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
Similar to Escherichia coli K12 transient receptor potential locus gi: 1787573 (266 aa). BLAST with identity of 96% in 160 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
Similar to Escherichia coli K12 dehydrogenase gi: 1787574 (352 aa). BLAST with identity of 98% in 352 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
Similar to Escherichia coli K12 outer membrane protein gi: 1787579 (302 aa). BLAST with identity of 98% in 301 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct.
DNA-binding transcriptional regulator TyrR
insertion sequence element ISSfl2 transposase
Similar to Escherichia coli K12 transcriptional regulator LYSR-type gi: 1787589 (300 aa). BLAST with identity of 97% in 145 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct.
Similar to Escherichia coli K12 conserved hypothetical protein gi: 1787622 (286 aa). BLAST with identity of 96% in 841 aa. This CDS has been disrupted by insertion. The sequence has been checked and is believed to be correct.
DnaC-like chromosome replication protein
iron ABC transporter ATP-binding protein
iron ABC transporter substrate-binding protein
Similar to Escherichia coli K12 transposase gi: 1787607 (412 aa). BLAST with identity of 96% in 525 aa. This CDS has been disrupted by insertion. The sequence has been checked and is believed to be correct.
insertion sequence element IS629 integrase core domain-containing protein
'Similar to Escherichia coli K12 protein phosphatase 1 modulates phosphoproteins, signals protein misfolding gi: 1788143 (220 aa). BLAST with identity of 99% in 642 aa. This CDS has been disrupted by insertion. The sequence has been checked and is believed to be correct.'
16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF
Similar to Escherichia coli K12 conserved hypothetical protein gi: 1788138 (880 aa). BLAST with identity of 97% in 875 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
DNA-binding transcriptional regulator KdgR
23S rRNA (guanine(745)-N(1))-methyltransferase
PTS system mannose-specific transporter subunit IID
PTS system mannose-specific transporter subunit IIC
PTS system mannose-specific transporter subunits IIAB
Similar to Escherichia coli K12 conserved hypothetical protein gi: 1788103 (375 aa). BLAST with identity of 99% in 206 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct.
Similar to Escherichia coli K12 ARAC-type regulatory protein gi: 1788091 (274 aa). BLAST with identity of 98% in 273 aa. This CDS ontains frameshift. The sequence has been checked and is believed to be correct.
Similar to Escherichia coli K12 conserved hypothetical protein gi: 1788086 (557 aa). BLAST with identity of 99% in 359 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct.
glyceraldehyde-3-phosphate dehydrogenase
Similar to Escherichia coli K12 oxidoreductase gi: 1788073 (348 aa). BLAST with identity of 99% in 349 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase
Similar to Escherichia coli K12 thiosulfate sulfur transferase gi: 1788054 (441 aa). BLAST with identity of 97% in 440 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
Similar to Escherichia coli K12 transport system permease gi: 1788052 (497 aa). BLAST with identity of 96% in 476 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
Similar to Escherichia coli K12 conserved hypothetical protein gi: 1788051 (390 aa). BLAST with identity of 97% in 868 aa. This CDS has been disrupted by insertion. The sequence has been checked and is believed to be correct.
Similar to Escherichia coli N-(alpha)-acetylornithine-(delta)-aminotransferase gb: AAB51148.1 (406 aa). BLAST with identity of 99% in 407 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
Similar to Escherichia coli K12 conserved hypothetical protein gi: 1788041 (448 aa). BLAST with identity of 97% in 445 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
DNA-binding transcriptional activator OsmE
PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB
PTS system N,N'-diacetylchitobiose-specific transporter subunit IIC
PTS system N,N'-diacetylchitobiose-specific transporter subunit IIA
Similar to Escherichia coli K12 negative transcriptional regulator of cel operon gi: 1788030 (281 aa). BLAST with identity of 98% in 540 aa. This CDS has been disrupted by insertion. The sequence has been checked and is believed to be correct.
Similar to Escherichia coli K12 conserved hypothetical protein gi: 1788015 (472 aa). BLAST with identity of 99% in 320 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct.
phenylalanyl-tRNA synthetase subunit alpha
phenylalanyl-tRNA synthetase subunit beta
phospho-2-dehydro-3-deoxyheptonate aldolase
electron transfer flavoprotein subunit YdiR
Similar to Escherichia coli K12 ARAC-type regulatory protein gi: 1787987 (304 aa). BLAST with identity of 98% in 160 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct.
two-protein-system connector protein SafA
minor fimbrial subunit, D-mannose specific adhesin-like protein
bifunctional antitoxin/transcriptional repressor RelB
Code: GEPR; COG: COG0477; proline permease II-like protein
DNA-binding transcriptional activator MarA
Similar to Escherichia coli K12 aldehyde dehydrogenase gi: 1787805 (471 aa). BLAST with identity of 98% in 240 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct.
autoinducer-2 (AI-2) modifying protein LsrG
Similar to Escherichia coli K12 kinase gi: 1787789 (531 aa). BLAST with identity of 98% in 274 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct.
autoinducer 2 ABC transporter ATP-binding protein LsrA
autoinducer 2 ABC transporter permease LsrC
autoinducer 2 import system permease LsrD
Similar to Escherichia coli K12 LACI-type transcriptional regulator gi: 1787795 (341 aa). BLAST with identity of 99% in 341 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
bifunctional D-altronate/D-mannonate dehydratase
Similar to Escherichia coli K12 spermidine N1-acetyltransferase gi: 1787867 (187 aa). BLAST with identity of 98% in 187 aa. This CDS ontains frameshift. The sequence has been checked and is believed to be correct.
anaerobic dimethyl sulfoxide reductase subunit A
'Similar to Escherichia coli K12 oxidoreductase, major subunit gi: 1787871 (809 aa). BLAST with identity of 98% in 681 aa. This CDS contains deletion. The sequence has been checked and is believed to be correct.'
twin-argninine leader-binding protein DmsD
Similar to Escherichia coli K12 transport protein gi: 1787880 (418 aa). BLAST with identity of 98% in 418 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
DNA-binding transcriptional regulator RstA
DNA replication terminus site-binding protein
Similar to Escherichia coli K12 glucuronide permease gi: 1787902 (458 aa). BLAST with identity of 98% in 344 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct.
DNA-binding transcriptional repressor MalI
bifunctional PTS system maltose and glucose-specific transporter subunits IICB
oriC-binding nucleoid-associated protein
Similar to Escherichia coli K12 conserved hypothetical protein gi: 1787933 (671 aa). BLAST with identity of 98% in 670 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
Similar to Escherichia coli K12 member of ATP-dependent helicase superfamily II gi: 1787942 (1539 aa). BLAST with identity of 98% in 1486 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
Similar to Escherichia coli K12 virulence protein gi: 1787702 (403 aa). BLAST with identity of 98% in 401 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
cyclopropane fatty acyl phospholipid synthase
Similar to Escherichia coli K12 transport protein gi: 1787953 (458 aa). BLAST with identity of 99% in 228 aa. This CDS has been disrupted by insertion. The sequence has been checked and is believed to be correct.
Similar to Escherichia coli K12 conserved hypothetical protein gi: 1787957 (535 aa). BLAST with identity of 98% in 474 aa. This CDS contains deletion. The sequence has been checked and is believed to be correct.
thiosulfate reductase cytochrome subunit B
Similar to Escherichia coli K12 conserved hypothetical protein gi: 1787970 (407 aa). BLAST with identity of 98% in 852 aa. This CDS has been disrupted by insertion. The sequence has been checked and is believed to be correct.
iron-sulfur cluster assembly scaffold protein
Similar to Escherichia coli K12 ATP-binding component of a transport system gi: 1787772 (562 aa). BLAST with identity of 98% in 562 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
Similar to Escherichia coli K12 enzyme gi: 1787765 (808 aa). BLAST with identity of 98% in 206 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct.
Similar to Escherichia coli K12 conserved hypothetical protein gi: 1787763 (194 aa). BLAST with identity of 97% in 111 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct.
Similar to Escherichia coli K12 transport protein gi: 1787760 (299 aa). BLAST with identity of 98% in 299 aa. This CDS ontains frameshift. The sequence has been checked and is believed to be correct.
peptide ABC transporter ATP-binding protein
ethanol-active dehydrogenase/acetaldehyde-active reductase
formate dehydrogenase-N iron-sulfur subunit beta
'Similar to Escherichia coli K12 cryptic nitrate reductase 2, alpha subunit ref: NP_415985.1 (1246 aa). BLAST with identity of 100% in 1266 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.'
colanic acid/biofilm transcriptional regulator
Similar to Escherichia coli K12 transport system permease gi: 1787713 (314 aa). BLAST with identity of 100% in 115 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct.
Similar to Escherichia coli K12 virulence protein gi: 1787702 (403 aa). BLAST with identity of 98% in 297 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct.
potassium-tellurite ethidium and proflavin transporter
ribosomal-protein-L7/L12-serine acetyltransferase
Similar to Escherichia coli K12 conserved hypothetical protein gi: 1787683 (267 aa). BLAST with identity of 98% in 176 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct.
Similar to Escherichia coli K12 enzymes gi: 1787679 (431 aa). BLAST with identity of 98% in 850 aa. This CDS has been disrupted by insertion. The sequence has been checked and is believed to be correct.
Similar to Escherichia coli K12 heat shock protein hslJ ref: NP_415897.1 (140 aa). BLAST with identity of 99% in 114 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct.
Similar to Escherichia coli K12 heat shock protein hslJ gi: 1787644 (141 aa). BLAST with identity of 99% in 40 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct.
tRNA 2-thiocytidine biosynthesis protein TtcA
Similar to Escherichia coli K12 conserved hypothetical protein gi: 1787603 (431 aa). BLAST with identity of 98% in 431 aa. This CDS ontains frameshift. The sequence has been checked and is believed to be correct.
Similar to Escherichia coli K12 conserved hypothetical protein gi: 1787602 (188 aa). BLAST with identity of 98% in 187 aa. This CDS ontains frameshift. The sequence has been checked and is believed to be correct.
multidrug resistant protein-like protein
Similar to Mesorhizobium loti probable secretion protein ref: NP_103897.1 (367 aa). BLAST with identity of 46% in 906 aa. This CDS has been disrupted by insertion. The sequence has been checked and is believed to be correct.
O-6-alkylguanine-DNA:cysteine-protein methyltransferase
fumarate/nitrate reduction transcriptional regulator
Similar to Escherichia coli K12 transcriptional regulator LYSR-type gi: 1787589 (300 aa). BLAST with identity of 99% in 155 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct.
Similar to Salmonella enterica subsp. enterica serovar Typhi integrase ref: NP_456439.1 (358 aa). BLAST with identity of 96% in 307 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
Similar to Escherichia coli K12 resistance protein gi: 1788145 (291 aa). BLAST with identity of 98% in 290 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
Similar to Escherichia coli K12 conserved hypothetical protein gi: 1788148 (219 aa). BLAST with identity of 99% in 219 aa. This CDS ontains frameshift. The sequence has been checked and is believed to be correct.
phosphoribosylglycinamide formyltransferase 2
keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase
DNA-binding transcriptional regulator HexR
lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase
high-affinity zinc ABC transporter ATPase
Similar to Escherichia coli K12 conserved hypothetical protein gi: 1788171 (247 aa). BLAST with identity of 97% in 247 aa. This CDS ontains frameshift. The sequence has been checked and is believed to be correct.
dihydroneopterin triphosphate pyrophosphatase
Similar to Escherichia coli K12 conserved hypothetical protein gi: 1788174 (200 aa). BLAST with identity of 96% in 719 aa. This CDS has been disrupted by insertion. The sequence has been checked and is believed to be correct.
Q antiterminator encoded by prophage CP-933P
crossover junction endodeoxyribonuclease
Similar to Escherichia coli K12 conserved hypothetical protein gi: 1788175 (273 aa). BLAST with identity of 99% in 114 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct.
Similar to Escherichia coli K12 flagellar biosynthesis; possible export of flagellar proteins gi: 1788187 (693 aa). BLAST with identity of 99% in 691 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
Similar to Escherichia coli K12 trehalose-6-phosphate synthase gi: 1788206 (475 aa). BLAST with identity of 97% in 148 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct.
L-arabinose transporter ATP-binding protein
Similar to Escherichia coli K12 L-arabinose-binding periplasmic protein gi: 1788211 (330 aa). BLAST with identity of 97% in 329 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
ftsQAZ gene cluster transcriptional regulator
amino acid ABC transporter ATP-binding protein YecC
1-aminocyclopropane-1-carboxylate deaminase
Similar to Escherichia coli K12 flagellar biosynthesis; alternative sigma factor 28; regulation of flagellar operons gi: 1788231 (240 aa). BLAST with identity of 98% in 239 aa. This CDS ontains frameshift. The sequence has been checked and is believed to be correct.
Similar to Escherichia coli K12 conserved hypothetical protein gi: 1788240 (218 aa). BLAST with identity of 94% in 218 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
Similar to Escherichia coli K12 conserved hypothetical protein gi: 1788246 (93 aa). BLAST with identity of 94% in 76 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct.
Similar to Escherichia coli K12 flagellar biosynthesis; basal-body MS(membrane and supramembrane)-ring and collar protein gi: 1788248 (553 aa). BLAST with identity of 96% in 553 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
colanic acid capsular biosynthesis activation protein A
Similar to Escherichia coli K12 conserved hypothetical protein gi: 1788265 (272 aa). BLAST with identity of 96% in 272 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
DMT superfamily transporter inner membrane protein
Similar to Escherichia coli K12 conserved hypothetical protein gi: 1788273 (232 aa). BLAST with identity of 96% in 180 aa. This CDS contains deletion. The sequence has been checked and is believed to be correct.
Similar to Escherichia coli K12 reductase gi: 1788282 (335 aa). BLAST with identity of 97% in 335 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
Similar to Shigella flexneri IpaH9.8 gb: AAC23714.1 (545 aa). BLAST with identity of 77% in 994 aa. This CDS has been disrupted by insertion. The sequence has been checked and is believed to be correct.
'Similar to Escherichia coli K12 transport protein, shikimate gi: 1788292 (439 aa). BLAST with identity of 97% in 643 aa. This CDS has been disrupted by insertion. The sequence has been checked and is believed to be correct.'
Similar to Escherichia coli K12 conserved hypothetical protein gi: 2367126 (548 aa). BLAST with identity of 98% in 542 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
nitrogen assimilation transcriptional regulator
nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase
adenosylcobinamide-GDP ribazoletransferase
adenosylcobinamide kinase/adenosylcobinamide phosphate guanyltransferase
Similar to Escherichia coli K12 conserved hypothetical protein gi: 1788318 (353 aa). BLAST with identity of 97% in 40 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct.
bifunctional histidinal dehydrogenase/ histidinol dehydrogenase
imidazole glycerol-phosphate dehydratase/histidinol phosphatase
imidazole glycerol phosphate synthase subunit HisH
1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
imidazole glycerol phosphate synthase subunit HisF
bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase
Similar to Escherichia coli K12 UDP-glucose 6-dehydrogenase gi: 1788340 (389 aa). BLAST with identity of 96% in 373 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
potential frameshift: common BLAST hit: gi|313200833|ref|YP_004039491.1| dolichyl-phosphate-mannose-protein mannosyltransferase
glucose-1-phosphate thymidylyltransferase
colanic acid biosynthesis glycosyltransferase WcaL
Similar to Escherichia coli K12 colanic acid polymerase ref: NP_416560.1 (405 aa). BLAST with identity of 96% in 324 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct.
Similar to Escherichia coli K12 regulator gi: 1788372 (280 aa). BLAST with identity of 96% in 279 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
Similar to Escherichia coli K12 sensor-type protein gi: 1788381 (1106 aa). BLAST with identity of 97% in 1586 aa. This CDS has been disrupted by insertion. The sequence has been checked and is believed to be correct.
Similar to Escherichia coli K12 heat shock protein gi: 1788384 (472 aa). BLAST with identity of 98% in 472 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
acriflavin resistance protein AcrA-like protein
Similar to Escherichia coli K12 conserved hypothetical protein gi: 1788390 (1041 aa). BLAST with identity of 98% in 1041 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
signal transduction histidine-protein kinase BaeS
DNA-binding transcriptional regulator BaeR
Similar to Escherichia coli K12 conserved hypothetical protein gi: 1788400 (89 aa). BLAST with identity of 94% in 49 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct.
PTS system galactitol-specific transporter subunit IIC
PTS system galactitol-specific transporter subunit IIB
PTS system galactitol-specific transporter subunit IIA
D-tagatose-1,6-bisphosphate aldolase subunit GatZ
Similar to Escherichia coli K12 conserved hypothetical protein gi: 1788416 (335 aa). BLAST with identity of 97% in 335 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
Similar to Escherichia coli K12 transcriptional regulator gi: 1788418 (249 aa). BLAST with identity of 98% in 694 aa. This CDS has been disrupted by insertion. The sequence has been checked and is believed to be correct.
bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase
Similar to Escherichia coli K12 conserved hypothetical protein gi: 1788423 (275 aa). BLAST with identity of 98% in 277 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
Similar to Escherichia coli K12 chaperone gi: 1788428 (240 aa). BLAST with identity of 97% in 498 aa. This CDS has been disrupted by insertion. The sequence has been checked and is believed to be correct.
'Similar to Escherichia coli K12 molybdate metabolism regulator, first fragment gi: 1788433 (275 aa). BLAST with identity of 98% in 956 aa. This CDS has been disrupted by insertion. The sequence has been checked and is believed to be correct.'
'Similar to Escherichia coli K12 molybdate metabolism regulator, second fragment 2 gi: 1788434 (646 aa). BLAST with identity of 96% in 648 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.'
Similar to Escherichia coli K12 regulator ref: NP_416621.1 (1210 aa). BLAST with identity of 81% in 1215 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
two-component response-regulatory protein YehT
Similar to Shigella flexneri conserved hypothetical protein ref: NP_085397.1 (448 aa). BLAST with identity of 77% in 448 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
Similar to Escherichia coli K12 transcriptional regulator gi: 1788448 (244 aa). BLAST with identity of 98% in 666 aa. This CDS has been disrupted by insertion. The sequence has been checked and is believed to be correct.
Similar to Escherichia coli K12 oxidoreductase gi: 1788459 (254 aa). BLAST with identity of 95% in 253 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
vancomycin high temperature exclusion protein
dihydropyrimidine dehydrogenase subunit A
Similar to Escherichia coli K12 oxidoreductase gi: 1788469 (414 aa). BLAST with identity of 98% in 395 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
methyl-galactoside ABC transporter permease
galactose/methyl galaxtoside transporter ATP-binding protein
methyl-galactoside ABC transporter substrate-binding protein MglB
DNA-binding transcriptional regulator GalS
Similar to Escherichia coli K12 esterase gi: 1788477 (279 aa). BLAST with identity of 98% in 280 aa. This CDS ontains frameshift. The sequence has been checked and is believed to be correct.
Similar to Escherichia coli K12 outer membrane receptor for iron-regulated colicin I receptor; porin; requires tonB gene product gi: 1788478 (664 aa). BLAST with identity of 99% in 663 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
DNA-binding transcriptional activator YeiL
PTS system fructose-specific transporter subunit IIBC
bifunctional PTS system fructose-specific transporter subunit IIA/HPr protein
microcin C ABC transporter permease YejB
microcin C ABC transporter ATP-binding protein YejF
thiol:disulfide interchange protein DsbE
cytochrome c-type biogenesis protein CcmE
cytochrome c-type biogenesis protein CcmB; Code: O; COG: COG2386
nitrate reductase cytochrome C550 subunit
quinol dehydrogenase periplasmic protein
assembly protein for periplasmic nitrate reductase
Similar to Escherichia coli K12 conserved hypothetical protein gi: 1788539 (549 aa). BLAST with identity of 97% in 541 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
multidrug transporter membrane protein-binding protein
alpha-ketoglutarate-dependent dioxygenase AlkB
bifunctional DNA-binding transcriptional dual regulator/O6-methylguanine-DNA methyltransferase
phosphotransfer intermediate protein in two-component regulatory system with RcsBC
hybrid sensory kinase in two-component regulatory system with RcsB and YojN
Similar to Escherichia coli K12 membrane protein gi: 1788559 (1338 aa). BLAST with identity of 98% in 1755 aa. This CDS has been disrupted by insertion. The sequence has been checked and is believed to be correct.
Similar to Escherichia coli K12 conserved hypothetical protein gi: 1788561 (579 aa). BLAST with identity of 98% in 578 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase
Similar to Escherichia coli K12 ATP-binding component of a transport system gi: 1788565 (1251 aa). BLAST with identity of 96% in 1688 aa. This CDS has been disrupted by insertion. The sequence has been checked and is believed to be correct.
ribonucleotide-diphosphate reductase subunit alpha
ribonucleoside-diphosphate reductase 1 subunit beta
sn-glycerol-3-phosphate dehydrogenase subunit A
anaerobic glycerol-3-phosphate dehydrogenase subunit B
sn-glycerol-3-phosphate dehydrogenase subunit C
Similar to Escherichia coli K12 conserved hypothetical protein gi: 1788578 (268 aa). BLAST with identity of 98% in 153 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct.
lipopolysaccharide core heptose(II)-phosphate phosphatase
undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase
4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase ArnD
4-amino-4-deoxy-L-arabinose lipid A transferase
4-amino-4-deoxy-L-arabinose-phospho-UDP flippase
2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase
2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase
Similar to Escherichia coli K12 aminopeptidase gi: 1788607 (326 aa). BLAST with identity of 96% in 213 aa. This CDS contains deletion. The sequence has been checked and is believed to be correct.
NADH:ubiquinone oxidoreductase subunit M
NADH:ubiquinone oxidoreductase subunit L
NADH:ubiquinone oxidoreductase subunit K
NADH:ubiquinone oxidoreductase subunit J
NADH:ubiquinone oxidoreductase subunit H
bifunctional NADH:ubiquinone oxidoreductase subunit C/D
NADH:ubiquinone oxidoreductase subunit A
DNA-binding transcriptional repressor LrhA
GSH-dependent disulfide bond oxidoreductase
D-erythro-7,8-dihydroneopterin triphosphate 2'-epimerase
histidine/lysine/arginine/ornithine ABC transporter ATP-binding protein
histidine/lysine/arginine/ornithine ABC transporter permease HisM
histidine/lysine/arginine/ornithine ABC transporter permease HisQ
histidine ABC transporter substrate-binding protein HisJ
lysine/arginine/ornithine ABC transporter substrate-binding protein
3-octaprenyl-4-hydroxybenzoate carboxy-lyase
bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
acetyl-CoA carboxylase carboxyltransferase subunit beta
penicillin-insensitive murein endopeptidase
Similar to Escherichia coli K12 chaperone gi: 1788677 (251 aa). BLAST with identity of 88% in 250 aa. This CDS ontains frameshift. The sequence has been checked and is believed to be correct.
Similar to Escherichia coli K12 outer membrane protein gi: 1788679 (579 aa). BLAST with identity of 97% in 577 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
multifunctional fatty acid oxidation complex subunit alpha
long-chain fatty acid outer membrane transporter
ABC transporter outer membrane lipoprotein
gluconate-like high-affinity transporter permease
DNA-binding transcriptional activator EvgA
hybrid sensory histidine kinase in two-component regulatory system with EvgA
Similar to Escherichia coli K12 sensor protein gi: 1788723 (566 aa). BLAST with identity of 99% in 496 aa. This CDS contains deletion. The sequence has been checked and is believed to be correct.
Similar to Escherichia coli K12 ARAC-type regulatory protein gi: 1788725 (286 aa). BLAST with identity of 97% in 286 aa. This CDS ontains frameshift. The sequence has been checked and is believed to be correct.
Similar to Escherichia coli K12 peptidase gi: 1788728 (362 aa). BLAST with identity of 96% in 361 aa. This CDS ontains frameshift. The sequence has been checked and is believed to be correct.
Similar to Escherichia coli K12 conserved hypothetical protein gi: 1788739 (769 aa). BLAST with identity of 99% in 639 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct.
PTS system phosphohistidinoprotein-hexose phosphotransferase subunit Hpr
phosphoenolpyruvate-protein phosphotransferase
PTS system glucose-specific transporter subunit IIA
pyridoxal-pyridoxamine kinase/hydroxymethylpyrimidine kinase
Similar to Escherichia coli K12 conserved hypothetical protein gi: 1788760 (245 aa). BLAST with identity of 96% in 241 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
sulfate ABC transporter ATP-binding protein
Similar to Escherichia coli K12 sulfate transport system permease W protein gi: 1788762 (150 aa). BLAST with identity of 95% in 149 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
N-acetylmuramic acid-6-phosphate etherase
PTS system N-acetylmuramic acid transporter subunits IIBC
Similar to Escherichia coli K12 ARAC-type regulatory protein gi: 1788778 (351 aa). BLAST with identity of 96% in 350 aa. This CDS ontains frameshift. The sequence has been checked and is believed to be correct.
reactivating factor for ethanolamine ammonia lyase
bifunctional malic enzyme oxidoreductase/phosphotransacetylase
'Similar to Escherichia coli K12 sensor for nitrate reductase system, protein histidine kinase (acts on NarP and narL) gi: 1788812 (567 aa). BLAST with identity of 97% in 563 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.'
phosphoribosylaminoimidazole-succinocarboxamide synthase
4-hydroxy-tetrahydrodipicolinate synthase
glycine cleavage system transcriptional repressor
Similar to Escherichia coli K12 hydrogenase 4 membrane subunit gi: 1788827 (673 aa). BLAST with identity of 98% in 673 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
formate hydrogenlyase maturation protein HycH
Similar to Escherichia coli K12 probable formate transporter (formate channel 2) gi: 1788837 (283 aa). BLAST with identity of 98% in 291 aa. This CDS ontains frameshift. The sequence has been checked and is believed to be correct.
phosphoribosylglycinamide formyltransferase
Similar to Escherichia coli K12 cytochrome C-type biogenesis protein gi: 1788849 (748 aa). BLAST with identity of 99% in 1170 aa. This CDS has been disrupted by insertion. The sequence has been checked and is believed to be correct.
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin)
ribosomal RNA large subunit methyltransferase N
mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-phosphodiesterase
Code: M; COG: COG0744; peptidoglycan synthetase
penicillin-binding protein 1B-like protein
Similar to Escherichia coli K12 thiosulfate sulfurtransferase gi: 1788869 (335 aa). BLAST with identity of 98% in 161 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct.
enhanced serine sensitivity protein SseB
[2FE-2S] ferredoxin electron carrer protein
DNA-binding transcriptional regulator IscR
tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ
DNA-binding transcriptional regulator HcaR
3-phenylpropionate/cinnamic acid dioxygenase subunit alpha
3-phenylpropionate/cinnamic acid dioxygenase subunit beta
3-phenylpropionate/cinnamic acid dioxygenase ferredoxin subunit
3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase
Similar to Escherichia coli K12 ferredoxin reductase subunit of phenylpropionate dioxygenase gi: 1788892 (401 aa). BLAST with identity of 99% in 408 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
Similar to Escherichia coli K12 LACI-type transcriptional regulator gi: 1788898 (328 aa). BLAST with identity of 97% in 327 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2
phosphoribosylformylglycinamidine synthase
'Similar to Escherichia coli K12 quinolinate synthetase, B protein gi: 1788928 (541 aa). BLAST with identity of 97% in 541 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.'
potential protein location (hypothetical protein SF2650 [Shigella flexneri 2a str. 301]) that overlaps RNA (16S ribosomal RNA)
bifunctional chorismate mutase/prephenate dehydratase
bifunctional chorismate mutase/prephenate dehydrogenase
Similar to Escherichia coli K12 conserved hypothetical protein gi: 1788956 (409 aa). BLAST with identity of 99% in 409 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
10Sa RNA (tmRNA); tags incomplete translation products for degradation
'Similar to Escherichia coli K12 succinate-semialdehyde dehydrogenase, NADP-dependent activity gi: 1789015 (483 aa). BLAST with identity of 96% in 483 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.'
DNA-binding transcriptional regulator CsiR
DNA binding protein, nucleoid-associated
ribonucleotide reductase stimulatory protein
ribonucleotide-diphosphate reductase subunit beta
glycine betaine transporter ATP-binding subunit
glycine betaine transporter membrane protein
glycine betaine transporter periplasmic subunit
Similar to Escherichia coli K12 multidrug resistance secretion protein gi: 1789041 (391 aa). BLAST with identity of 97% in 391 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
fructose-1-P/6-phosphogluconate phosphatase
potential protein location (hypothetical protein SF2718 [Shigella flexneri 2a str. 301]) that overlaps RNA (tRNA-R)
'Similar to Escherichia coli K12 PTS system, glucitol/sorbitol-specific IIC component, one of two gi: 1789054 (187 aa). BLAST with identity of 92% in 131 aa. This CDS ontains frameshift. The sequence has been checked and is believed to be correct.'
PTS system glucitol/sorbitol-specific transporter subunit IIBC
PTS system glucitol/sorbitol-specific transporter subunit IIA
DNA-binding transcriptional activator GutM
DNA-binding transcriptional repressor SrlR
anaerobic nitric oxide reductase flavorubredoxin
formate dehydrogenase-H ferredoxin subunit
formate hydrogenlyase regulatory protein HycA
hydrogenase nickel incorporation protein
hydrogenase nickel incorporation protein HypB
hydrogenase isoenzymes formation protein HypD
hydrogenase expression/formation protein HypE
formate hydrogenlyase transcriptional activator FhlA
Similar to Escherichia coli K12 protein phosphatase 2 gi: 1789090 (219 aa). BLAST with identity of 95% in 218 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
Similar to Escherichia coli K12 dehydrogenase gi: 1789092 (303 aa). BLAST with identity of 99% in 303 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
phenylacrylic acid decarboxylase-like protein
protein-L-isoaspartate O-methyltransferase
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
phosphoadenosine phosphosulfate reductase
Similar to Escherichia coli K12 anti-terminator regulatory protein gi: 1789127 (192 aa). BLAST with identity of 96% in 192 aa. This CDS ontains frameshift. The sequence has been checked and is believed to be correct.
(p)ppGpp synthetase I/GTP pyrophosphokinase
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Similar to Escherichia coli K12 L-fuculokinase gi: 1789168 (483 aa). BLAST with identity of 98% in 483 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
DNA-binding transcriptional activator FucR
23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM
DNA-binding transcriptional activator GcvA
Similar to Escherichia coli K12 prepilin peptidase dependent protein A gi: 1789190 (157 aa). BLAST with identity of 99% in 156 aa. This CDS ontains frameshift. The sequence has been checked and is believed to be correct.
prolipoprotein diacylglyceryl transferase
fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain containing protein
bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase
DNA-binding transcriptional regulator GalR
low-affinity L-arabinose transport system proton symport protein
Similar to Escherichia coli K12 conserved hypothetical protein gi: 1789267 (104 aa). BLAST with identity of 98% in 103 aa. This CDS ontains frameshift. The sequence has been checked and is believed to be correct.
glycine cleavage system aminomethyltransferase T
2-octaprenyl-6-methoxyphenyl hydroxylase
Similar to Escherichia coli K12 conserved hypothetical protein gi: 1789281 (77 aa). BLAST with identity of 97% in 61 aa. This CDS contains deletion. The sequence has been checked and is believed to be correct.
chromosome replication initiation inhibitor protein
Similar to Escherichia coli K12 coenzyme A transferase gi: 1789287 (493 aa). BLAST with identity of 98% in 493 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
Similar to Escherichia coli O157:H7 EDL933 conserved hypothetical protein ref: NP_289497.1 (235 aa). BLAST with identity of 97% in 236 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
nucleoside triphosphate hydrolase domain-containing protein
16S ribosomal RNA methyltransferase RsmE
Holliday junction resolvase-like protein
Similar to Escherichia coli K12 glycolate oxidase iron-sulfur subunit gi: 1789350 (762 aa). BLAST with identity of 98% in 760 aa. This CDS ontains frameshift. The sequence has been checked and is believed to be correct.
Similar to Escherichia coli K12 glycolate oxidase subunit D gi: 1789351 (500 aa). BLAST with identity of 98% in 497 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
DNA-binding transcriptional regulator GlcC
Similar to Escherichia coli K12 conserved hypothetical protein gi: 1789354 (391 aa). BLAST with identity of 99% in 367 aa. This CDS ontains frameshift. The sequence has been checked and is believed to be correct.
low-affinity phosphate transport protein
bifunctional glutathionylspermidine amidase/glutathionylspermidine synthetase
hydrogenase nickel incorporation protein HybF
1-acyl-sn-glycerol-3-phosphate acyltransferase
DNA-binding transcriptional regulator QseB
cyclic 3',5'-adenosine monophosphate phosphodiesterase
3,4-dihydroxy-2-butanone-4-phosphate synthase
Similar to Escherichia coli K12 conserved hypothetical protein gi: 1789427 (355 aa). BLAST with identity of 95% in 108 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct.
Similar to Escherichia coli K12 membrane protein gi: 1789430 (554 aa). BLAST with identity of 96% in 303 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct.
bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase
bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase
multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase
bifunctional dihydroneopterin aldolase/dihydroneopterin triphosphate 2'-epimerase
glycerol-3-phosphate acyltransferase PlsY
Similar to Escherichia coli K12 conserved hypothetical protein gi: 1789449 (169 aa). BLAST with identity of 99% in 168 aa. This CDS ontains frameshift. The sequence has been checked and is believed to be correct.
Similar to Escherichia coli K12 conserved hypothetical protein gi: 1789450 (255 aa). BLAST with identity of 99% in 248 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
'Similar to Escherichia coli K12 aerotaxis sensor receptor, flavoprotein gi: 1789453 (507 aa). BLAST with identity of 98% in 506 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.'
DNA-binding transcriptional repressor EbgR
cryptic beta-D-galactosidase subunit alpha
cryptic beta-D-galactosidase subunit beta
Similar to Escherichia coli K12 conserved hypothetical protein gi: 1789461 (357 aa). BLAST with identity of 97% in 357 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
SAM-dependent 23S ribosomal RNA mG1835 methyltransferase
DNA-binding transcriptional repressor ExuR
Similar to Escherichia coli K12 conserved hypothetical protein gi: 2367195 (128 aa). BLAST with identity of 99% in 123 aa. This CDS ontains frameshift. The sequence has been checked and is believed to be correct.
DNA-binding transcriptional activator TdcA
DNA-binding transcriptional activator TdcR
Similar to Escherichia coli K12 conserved hypothetical protein gi: 1789509 (396 aa). BLAST with identity of 96% in 393 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
Similar to Escherichia coli K12 conserved hypothetical protein gi: 1789514 (257 aa). BLAST with identity of 99% in 256 aa. This CDS ontains frameshift. The sequence has been checked and is believed to be correct.
DNA-binding transcriptional regulator AgaR
tagatose 6-phosphate aldolase subunit KbaZ
PTS system N-acetylgalactosamine-specific transporter subunit IIB
PTS system N-acetylgalactosamine-specific transporter subunit IIC
PTS system N-acetylgalactosamine-specific transporter subunit IID
PTS system N-acetylgalactosamine-specific transporter subunit IIA
Similar to Escherichia coli K12 fimbrial-like protein gi: 1789531 (195 aa). BLAST with identity of 96% in 454 aa. This CDS has been disrupted by insertion. The sequence has been checked and is believed to be correct.
Similar to Escherichia coli K12 outer membrane protein gi: 1789533 (839 aa). BLAST with identity of 98% in 1284 aa. This CDS has been disrupted by insertion. The sequence has been checked and is believed to be correct.
SAM-dependent 16S ribosomal RNA C1402 ribose 2'-O-methyltransferase
potential protein location (hypothetical protein SF3212 [Shigella flexneri 2a str. 301]) that overlaps RNA (tRNA-M)
Similar to Escherichia coli K12 alkaline phosphatase I gi: 1789564 (548 aa). BLAST with identity of 99% in 548 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
D-alanyl-D-alanine carboxypeptidase/endopeptidase
DNA-binding transcriptional regulator Nlp
UDP-N-acetylglucosamine 1-carboxyvinyltransferase
ABC transporter substrate-binding protein MlaC
3-deoxy-D-manno-octulosonate 8-phosphate phosphatase KdsC
lipopolysaccharide exporter periplasmic protein LptC
lipopolysaccharide transport periplasmic protein LptA
ribosome hibernation promoting factor HPF
PTS system sugar transporter subunit IIA
N-regulated PTS system (Npr) phosphohistidinoprotein-hexose phosphotransferase
Similar to Escherichia coli K12 peptidoglycan enzyme gi: 1789601 (243 aa). BLAST with identity of 99% in 242 aa. This CDS ontains frameshift. The sequence has been checked and is believed to be correct.
isoprenoid biosynthesis protein with amidotransferase-like domain
aerobic respiration control sensor protein ArcB
Similar to Escherichia coli K12 conserved hypothetical protein gi: 1789614 (376 aa). BLAST with identity of 92% in 135 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct.
N-acetylmannosamine-6-phosphate 2-epimerase
cryptic C4-dicarboxylate transporter DcuD
ClpXP protease specificity-enhancing factor
p-hydroxybenzoic acid efflux subunit AaeB
p-hydroxybenzoic acid efflux subunit AaeA
acetyl-CoA carboxylase biotin carboxyl carrier protein subunit
acetyl-CoA carboxylase biotin carboxylase subunit
Similar to Escherichia coli K12 transport system permease gi: 1789669 (369 aa). BLAST with identity of 97% in 180 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct.
tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein
DNA-directed RNA polymerase subunit alpha
GTP-binding protein chain elongation factor EF-G
glutathione-regulated potassium-efflux system ancillary protein KefG
DNA-binding transcriptional dual regulator Crp
para-aminobenzoate synthase component II
Similar to Escherichia coli K12 amino acid/amine transport protein gi: 2367216 (463 aa). BLAST with identity of 99% in 462 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
DNA-binding transcriptional regulator FrlR
Similar to Escherichia coli K12 conserved hypothetical protein gi: 1789794 (148 aa). BLAST with identity of 99% in 148 aa. This CDS ontains frameshift. The sequence has been checked and is believed to be correct.
ribosome-associated heat shock protein Hsp15
transcription elongation factor and transcript cleavage factor
Similar to Escherichia coli K12 positive regulator of mal regulon gi: 2367223 (902 aa). BLAST with identity of 99% in 894 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
DNA-binding transcriptional repressor GlpR
gluconate operon transcriptional regulator
cytoplasmic glycerophosphodiester phosphodiesterase
Similar to Escherichia coli K12 ATP-binding component of sn-glycerol 3-phosphate transport system gi: 1789859 (370 aa). BLAST with identity of 96% in 789 aa. This CDS has been disrupted by insertion. The sequence has been checked and is believed to be correct.
glycerol-3-phosphate ABC transporter permease
glycerol-3-phosphate transporter permease
glycerol-3-phosphate ABC transporter substrate-binding protein
leucine/isoleucine/valine ABC transporter permease
branched-chain amino acid ABC transporter permease
leucine ABC transporter substrate-binding protein LivK
cell division ABC transporter subunit FtsX
signal recognition particle-docking protein FtsY
16S rRNA (guanine(966)-N(2))-methyltransferase
zinc/cadmium/mercury/lead-transporting ATPase
major facilitator superfamily transporter
nickel ABC transporter substrate-binding protein
nickel ABC transporter ATP-binding protein NikD
nickel ABC transporter ATP-binding protein NikE
Similar to Escherichia coli K12 conserved hypothetical protein gi: 1789905 (384 aa). BLAST with identity of 96% in 375 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
Similar to Escherichia coli K12 transport system permease gi: 1789669 (369 aa). BLAST with identity of 99% in 187 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct.
universal stress global response regulator UspA
Similar to Escherichia coli K12 transport protein gi: 1789911 (490 aa). BLAST with identity of 98% in 489 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
carbon starvation outer membrane protein
Similar to Escherichia coli K12 transport ATPase gi: 1789924 (216 aa). BLAST with identity of 99% in 215 aa. This CDS ontains frameshift. The sequence has been checked and is believed to be correct.
Similar to Escherichia coli K12 membrane protein gi: 1789929 (386 aa). BLAST with identity of 99% in 302 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct.
Similar to Escherichia coli K12 oxidoreductase subunit gi: 2367239 (1167 aa). BLAST with identity of 98% in 785 aa. This CDS contains deletion. The sequence has been checked and is believed to be correct.
Similar to Escherichia coli K12 cellulose synthase gi: 2367240 (889 aa). BLAST with identity of 98% in 888 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
dipeptide transporter ATP-binding protein
bifunctional glyoxylate/hydroxypyruvate reductase B
DNA-binding transcriptional regulator GadX
Similar to Escherichia coli K12 membrane protein gi: 1789929 (386 aa). BLAST with identity of 99% in 85 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct.
Similar to Escherichia coli K12 D-xylose isomerase gi: 1789988 (441 aa). BLAST with identity of 99% in 440 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
Similar to Escherichia coli K12 regulator of xyl operon gi: 1789993 (393 aa). BLAST with identity of 99% in 393 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
Similar to Escherichia coli K12 conserved hypothetical protein gi: 1790002 (158 aa). BLAST with identity of 99% in 106 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct.
L-dehydroascorbate transporter large permease
selenocysteinyl-tRNA-specific translation factor
PTS system mannitol-specific transporter subunit IICBA
DNA-binding transcriptional repressor LldR
NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
2,3-bisphosphoglycerate-independent phosphoglycerate mutase
lipopolysaccharide 1,2-N-acetylglucosaminetransferase
UDP-glucose:(galactosyl) LPS alpha1,2-glucosyltransferase
lipopolysaccharide core biosynthesis protein
lipopolysaccharide 1,3-galactosyltransferase
lipopolysaccharide core heptose(I) kinase RfaP
3-deoxy-D-manno-octulosonic acid transferase
formamidopyrimidine/5-formyluracil/ 5-hydroxymethyluracil DNA glycosylase
deoxyuridine 5'-triphosphate nucleotidohydrolase
DNA-directed RNA polymerase subunit omega
bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase
Similar to Escherichia coli K12 permease gi: 2367257 (480 aa). BLAST with identity of 99% in 480 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
phosphate ABC transporter substrate-binding protein
high-affinity phosphate ABC transporter permease
phosphate ABC transporter permease subunit PtsA
phosphate ABC transporter ATP-binding protein PstB
PTS system beta-glucoside-specific transporter subunits IIABC
Similar to Escherichia coli K12 phospho-beta-glucosidase B; cryptic gi: 2367270 (471 aa). BLAST with identity of 98% in 729 aa. This CDS has been disrupted by insertion. The sequence has been checked and is believed to be correct.
Similar to Escherichia coli K12 conserved hypothetical protein gi: 1790153 (196 aa). BLAST with identity of 98% in 888 aa. This CDS has been disrupted by insertion. The sequence has been checked and is believed to be correct.
Similar to Escherichia coli K12 transcriptional regulator LYSR-type gi: 1790147 (320 aa). BLAST with identity of 97% in 742 aa. This CDS has been disrupted by insertion. The sequence has been checked and is believed to be correct.
Similar to Escherichia coli K12 2-oxo-3-deoxygalactonate 6-phosphate aldolase and galactonate dehydratase gi: 2367262 (588 aa). BLAST with identity of 97% in 588 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
PTS system arbutin-specific transporter subunit IIB
Similar to Escherichia coli K12 probable 6-phospho-beta-glucosidase gi: 1790115 (213 aa). BLAST with identity of 98% in 213 aa. This CDS ontains frameshift. The sequence has been checked and is believed to be correct.
Similar to Escherichia coli K12 sulfatase gi: 1790112 (498 aa). BLAST with identity of 97% in 489 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
acetolactate synthase 1 regulatory subunit
DNA-binding transcriptional activator UhpA
glucosamine--fructose-6-phosphate aminotransferase
bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase
tRNA uridine 5-carboxymethylaminomethyl modification protein GidA
DNA-binding transcriptional regulator AsnC
Similar to Escherichia coli K12 ATP-binding component of D-ribose high-affinity transport system gi: 1790190 (502 aa). BLAST with identity of 98% in 761 aa. This CDS has been disrupted by insertion. The sequence has been checked and is believed to be correct.
Similar to Escherichia coli K12 D-ribose periplasmic binding protein gi: 1790192 (297 aa). BLAST with identity of 98% in 297 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
Similar to Escherichia coli K12 2-component regulator gi: 1790201 (517 aa). BLAST with identity of 97% in 503 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
acetolactate synthase 2 catalytic subunit
acetolactate synthase 2 regulatory subunit
branched-chain amino acid aminotransferase
DNA-binding transcriptional regulator IlvY
guanosine pentaphosphate phosphohydrolase
undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase
lipopolysaccharide biosynthesis protein WzzE
UDP-N-acetyl-D-mannosamine dehydrogenase
TDP-4-oxo-6-deoxy-D-glucose transaminase
UDP-N-acetyl-D-mannosaminuronic acid transferase
uroporphyrinogen III C-methyltransferase
Similar to Escherichia coli K12 conserved hypothetical protein gi: 1790240 (162 aa). BLAST with identity of 97% in 1275 aa. This CDS has been disrupted by insertion. The sequence has been checked and is believed to be correct.
Similar to Escherichia coli K12 conserved hypothetical protein gi: 1790248 (162 aa). BLAST with identity of 99% in 641 aa. This CDS has been disrupted by insertion. The sequence has been checked and is believed to be correct.
magnesium/nickel/cobalt transporter CorA
chloramphenical resistance permease RarD
DNA-binding transcriptional regulator MetR
5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase
ubiquinone/menaquinone biosynthesis methyltransferase
twin-arginine translocation protein TatA
twin-arginine protein translocation system subunit TatC
3-octaprenyl-4-hydroxybenzoate decarboxylase
molybdopterin-guanine dinucleotide biosynthesis protein B
molybdopterin-guanine dinucleotide biosynthesis protein MobA
periplasmic protein disulfide isomerase I
formate dehydrogenase accessory protein FdhE
formate dehydrogenase-O iron-sulfur subunit
Similar to Escherichia coli K12 frv operon regulatory protein gi: 1790331 (583 aa). BLAST with identity of 99% in 209 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct.
PTS system fructose-family transporter subunit IIA
6-N-hydroxylaminopurine resistance protein
DNA-binding transcriptional regulator CpxR
Similar to Escherichia coli K12 conserved hypothetical protein gi: 1790355 (147 aa). BLAST with identity of 99% in 147 aa. This CDS ontains frameshift. The sequence has been checked and is believed to be correct.
ribonuclease activity regulator protein RraA
1,4-dihydroxy-2-naphthoate polyprenyltransferase
ATP-dependent protease ATP-binding subunit HslU
DNA-binding transcriptional regulator CytR
bifunctional aspartate kinase II/homoserine dehydrogenase II
5,10-methylenetetrahydrofolate reductase
Similar to Escherichia coli K12 conserved hypothetical protein gi: 1790380 (206 aa). BLAST with identity of 95% in 202 aa. This CDS ontains frameshift. The sequence has been checked and is believed to be correct.
'Similar to Escherichia coli K12 glycerol dehydrogenase, (NAD) gi: 1790381 (381 aa). BLAST with identity of 97% in 380 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.'
Similar to Escherichia coli K12 PEP-protein phosphotransferase system enzyme I gi: 1790383 (712 aa). BLAST with identity of 97% in 711 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
PTS system fructose-like transporter subunit IIC
PTS system fructose-like transporter subunit IIB
[formate-C-acetyltransferase]-activating enzyme
N-acetyl-gamma-glutamyl-phosphate reductase
Similar to Escherichia coli O157:H7 transport protein ref: NP_313343.1 (453 aa). BLAST with identity of 59% in 687 aa. This CDS has been disrupted by insertion. The sequence has been checked and is believed to be correct.
DNA-binding transcriptional regulator OxyR
DNA-binding transcriptional repressor FabR
vitamin B12/cobalamin outer membrane transporter
UDP-N-acetylenolpyruvoylglucosamine reductase
bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor
transcription antitermination protein NusG
DNA-directed RNA polymerase subunit beta
DNA-directed RNA polymerase subunit beta'
thiamin biosynthesis protein thiazole subunit
transcriptional regulator HU subunit alpha
bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
Similar to Escherichia coli K12 homoserine transsuccinylase gi: 1790443 (310 aa). BLAST with identity of 98% in 212 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct.
Similar to Escherichia coli K12 malate synthase A gi: 1790444 (534 aa). BLAST with identity of 98% in 534 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
Similar to Escherichia coli K12 isocitrate dehydrogenase kinase/phosphatase gi: 1790446 (579 aa). BLAST with identity of 98% in 579 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
Similar to Escherichia coli K12 regulator of acetyl CoA synthetase gi: 1790447 (729 aa). BLAST with identity of 98% in 728 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
PTS system sorbose transporter subunit IID
PTS system sorbose transporter subunit IIB
PTS system sorbose transporter subunit IIA
DNA-binding transcriptional activator DcuR
DNA-binding transcriptional regulator MelR
DNA-binding transcriptional regulator BasR
phosphonate/organophosphate ester transporter subunit
phosphonate transporter substrate-binding protein
Similar to Escherichia coli K12 conserved hypothetical protein gi: 1790496 (529 aa). BLAST with identity of 98% in 526 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
DNA-binding transcriptional regulator SoxS
redox-sensitivie transcriptional activator SoxR
Similar to Escherichia coli K12 acetyl-CoA synthetase gi: 1790505 (653 aa). BLAST with identity of 98% in 652 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
cytochrome c nitrite reductase subunit c552
cytochrome c nitrite reductase pentaheme subunit
formate-dependent nitrate reductase, transmembrane protein
formate-dependent nitrite reductase complex subunit NrfF
formate-dependent nitrite reductase complex subunit NrfG
Similar to Escherichia coli K12 selenopolypeptide subunit of formate dehydrogenase H gi: 3868721 (716 aa). BLAST with identity of 98% in 716 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
Similar to Escherichia coli K12 conserved hypothetical protein gi: 1790471 (443 aa). BLAST with identity of 98% in 441 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
maltose ABC transporter ATP-binding protein
maltose ABC transporter substrate-binding protein
phosphate-starvation-inducible protein PsiE
cell density-dependent motility repressor
DNA replication/recombination/repair protein
DNA-binding transcriptional repressor UxuR
minor fimbrial subunit, D-mannose specific adhesin
'Similar to Escherichia coli K12 outer membrane protein; export and assembly of type 1 fimbriae, interrupted gi: 1790772 (879 aa). BLAST with identity of 98% in 1137 aa. This CDS has been disrupted by insertion. The sequence has been checked and is believed to be correct.'
Similar to Escherichia coli K12 conserved hypothetical protein gi: 1790648 (265 aa). BLAST with identity of 95% in 76 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct.
lipopolysaccharide ABC transporter permease
lipopolysaccharide ABC transporter permease LptF
ornithine carbamoyltransferase subunit I
Similar to Escherichia coli K12 conserved hypothetical protein gi: 1790702 (617 aa). BLAST with identity of 90% in 252 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct.
PTS system trehalose(maltose)-specific transporter subunits IIBC
anaerobic ribonucleoside triphosphate reductase
anaerobic ribonucleotide reductase-activating protein
3'(2'),5'-bisphosphate nucleotidase CysQ
bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase
iron-sulfur cluster repair di-iron protein
beta-lactamase/D-alanine carboxypeptidase
Similar to Escherichia coli K12 transport gi: 1790600 (515 aa). BLAST with identity of 97% in 758 aa. This CDS has been disrupted by insertion. The sequence has been checked and is believed to be correct.
tRNA delta(2)-isopentenylpyrophosphate transferase
23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB
PTS system ascorbate-specific transporter subunit IIC
PTS system L-ascorbate-specific transporter subunit IIB
PTS system L-ascorbate-specific transporter subunit IIA
3-keto-L-gulonate-6-phosphate decarboxylase UlaD
Similar to Escherichia coli K12 conserved hypothetical protein gi: 1790648 (265 aa). BLAST with identity of 97% in 185 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct.
restriction modification enzyme M subunit
Type I restriction enzyme EcoAI R protein
4-hydroxyphenylacetate 3-monooxygenase reductase subunit
4-hydroxyphenylacetate catabolism regulatory protein HpaA
4-hydroxy-2-oxo-heptane-1,7-dioate aldolase
2-oxo-hepta-3-ene-1,7-dioic acid hydratase
5-carboxymethyl-2-hydroxymuconate delta-isomerase
3,4-dihydroxyphenylacetate 2,3-dioxygenase
5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase
4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase
Similar to Escherichia coli K12 oxidoreductase gi: 1790819 (346 aa). BLAST with identity of 98% in 346 aa. This CDS ontains frameshift. The sequence has been checked and is believed to be correct.
ferric hydroximate transport ferric iron reductase
ribosomal-protein-alanine N-acetyltransferase
Similar to Escherichia coli K12 lipoate-protein ligase A gi: 1790846 (339 aa). BLAST with identity of 97% in 338 aa. This CDS ontains frameshift. The sequence has been checked and is believed to be correct.
Similar to Escherichia coli K12 conserved hypothetical protein gi: 1790855 (174 aa). BLAST with identity of 95% in 172 aa. This CDS ontains frameshift. The sequence has been checked and is believed to be correct.
right oriC-binding transcriptional activator