Calothrix parasitica NIES-267 plasmid plasmid2 DNA, complete genome.
Bacteria; Cyanobacteriota; Cyanophyceae; Nostocales; Calotrichaceae; Calothrix.
Genome sequencing of cyanobaciteial culture collection at National Institute for Environmental Studies (NIES)
Submitted (23-JUN-2017) Contact:Yuu Hirose Toyohashi University of Technology, Department of Environmental and Life Sciences; Hibarigaoka-1-1 Tenpakucho, Toyohashi, Aichi 441-8122, Japan URL :http://mcc.nies.go.jp/ strainList.do?strainId=29&strainNumberEn=NIES-267
REFSEQ INFORMATION: The reference sequence was derived from\nAP018229.\nNBRP Genome Information Upgrading Program.: Genome sequencing of\ncyanobaciteial culture collection at National Institute for\nEnvironmental Studies (NIES).\n\nAnnotated using prokka 1.11 from http://www.vicbioinformatics.com.\nAnnotated at D-FAST https://dfast.nig.ac.jp\n\nAnnotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (released 2013). Information about the Pipeline can be\nfound here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: GS De Novo Assembler v. 2.9\nGenome Coverage :: 88x\nSequencing Technology :: Ilumina MiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Date :: 09/28/2017 12:56:01\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS+\nAnnotation Software revision :: 4.2\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 7,420\nCDS (total) :: 7,338\nGenes (coding) :: 7,027\nCDS (coding) :: 7,027\nGenes (RNA) :: 82\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 69\nncRNAs :: 4\nPseudo Genes (total) :: 311\nPseudo Genes (ambiguous residues) :: 2 of 311\nPseudo Genes (frameshifted) :: 106 of 311\nPseudo Genes (incomplete) :: 178 of 311\nPseudo Genes (internal stop) :: 69 of 311\nPseudo Genes (multiple problems) :: 44 of 311\nCRISPR Arrays :: 10\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_015116120.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS+
Derived by automated computational analysis using gene prediction method: GeneMarkS+.
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_012412866.1
COORDINATES: protein motif:HMM:PF00082.20,HMM:PF13448.4
COORDINATES: protein motif:HMM:PF04221.10
COORDINATES: protein motif:HMM:PF01850.19
COORDINATES: similar to AA sequence:RefSeq:WP_010994099.1
COORDINATES: similar to AA sequence:RefSeq:WP_019488314.1
type IV secretion system DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015328704.1
COORDINATES: similar to AA sequence:RefSeq:WP_019488318.1
AbrB/MazE/SpoVT family DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015121009.1
COORDINATES: protein motif:HMM:PF08401.9
zincin-like metallopeptidase domain-containing protein
type II toxin-antitoxin system VapC family toxin
COORDINATES: protein motif:HMM:PF10592.7
COORDINATES: protein motif:HMM:PF06250.9
PDDEXK nuclease domain-containing protein
COORDINATES: protein motif:HMM:PF12671.5
COORDINATES: protein motif:HMM:PF13847.4
COORDINATES: similar to AA sequence:RefSeq:WP_018782389.1
COORDINATES: protein motif:HMM:PF00152.18
COORDINATES: protein motif:HMM:PF00326.19
prolyl oligopeptidase family serine peptidase
COORDINATES: protein motif:HMM:PF01863.15
SprT family zinc-dependent metalloprotease
COORDINATES: similar to AA sequence:RefSeq:WP_015155198.1
COORDINATES: protein motif:HMM:PF01710.14
COORDINATES: protein motif:HMM:PF13358.4
COORDINATES: protein motif:HMM:PF01345.16,HMM:PF03160.12,HMM:PF13448.4
COORDINATES: protein motif:HMM:PF01656.21
COORDINATES: similar to AA sequence:RefSeq:WP_016948723.1
COORDINATES: similar to AA sequence:RefSeq:WP_012599531.1
COORDINATES: similar to AA sequence:RefSeq:WP_015208965.1
type I restriction endonuclease subunit R
COORDINATES: similar to AA sequence:RefSeq:WP_017711062.1
COORDINATES: similar to AA sequence:RefSeq:WP_015116193.1
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_007217049.1
COORDINATES: similar to AA sequence:RefSeq:WP_015210504.1
COORDINATES: similar to AA sequence:RefSeq:WP_010473902.1
COORDINATES: similar to AA sequence:RefSeq:WP_015179980.1
COORDINATES: similar to AA sequence:RefSeq:WP_017655443.1