Calothrix parasitica NIES-267 plasmid plasmid1 DNA, complete genome.
Bacteria; Cyanobacteriota; Cyanophyceae; Nostocales; Calotrichaceae; Calothrix.
Genome sequencing of cyanobaciteial culture collection at National Institute for Environmental Studies (NIES)
Submitted (23-JUN-2017) Contact:Yuu Hirose Toyohashi University of Technology, Department of Environmental and Life Sciences; Hibarigaoka-1-1 Tenpakucho, Toyohashi, Aichi 441-8122, Japan URL :http://mcc.nies.go.jp/ strainList.do?strainId=29&strainNumberEn=NIES-267
REFSEQ INFORMATION: The reference sequence was derived from\nAP018228.\nNBRP Genome Information Upgrading Program.: Genome sequencing of\ncyanobaciteial culture collection at National Institute for\nEnvironmental Studies (NIES).\n\nAnnotated using prokka 1.11 from http://www.vicbioinformatics.com.\nAnnotated at D-FAST https://dfast.nig.ac.jp\n\nAnnotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (released 2013). Information about the Pipeline can be\nfound here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: GS De Novo Assembler v. 2.9\nGenome Coverage :: 88x\nSequencing Technology :: Ilumina MiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Date :: 09/28/2017 12:56:01\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS+\nAnnotation Software revision :: 4.2\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 7,420\nCDS (total) :: 7,338\nGenes (coding) :: 7,027\nCDS (coding) :: 7,027\nGenes (RNA) :: 82\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 69\nncRNAs :: 4\nPseudo Genes (total) :: 311\nPseudo Genes (ambiguous residues) :: 2 of 311\nPseudo Genes (frameshifted) :: 106 of 311\nPseudo Genes (incomplete) :: 178 of 311\nPseudo Genes (internal stop) :: 69 of 311\nPseudo Genes (multiple problems) :: 44 of 311\nCRISPR Arrays :: 10\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS+
Derived by automated computational analysis using gene prediction method: GeneMarkS+.
COORDINATES: similar to AA sequence:RefSeq:WP_012413321.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011316315.1
COORDINATES: similar to AA sequence:RefSeq:WP_017740897.1
COORDINATES: similar to AA sequence:RefSeq:WP_017741175.1
COORDINATES: similar to AA sequence:RefSeq:WP_012408904.1
COORDINATES: similar to AA sequence:RefSeq:WP_011316333.1
COORDINATES: protein motif:HMM:PF00196.17
LuxR C-terminal-related transcriptional regulator
COORDINATES: protein motif:HMM:PF13518.4
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:PF12694.5
COORDINATES: protein motif:HMM:PF03432.12
relaxase/mobilization nuclease domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015120884.1
COORDINATES: similar to AA sequence:RefSeq:WP_015120886.1
COORDINATES: similar to AA sequence:RefSeq:WP_015117932.1
COORDINATES: similar to AA sequence:RefSeq:WP_015117934.1
COORDINATES: protein motif:HMM:PF00271.29,HMM:PF04851.13
COORDINATES: similar to AA sequence:RefSeq:WP_015136537.1
COORDINATES: similar to AA sequence:RefSeq:WP_015155586.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_019496075.1
COORDINATES: similar to AA sequence:RefSeq:WP_016873813.1
COORDINATES: similar to AA sequence:RefSeq:WP_015116115.1
COORDINATES: similar to AA sequence:RefSeq:WP_017654155.1
type I restriction endonuclease subunit R
COORDINATES: protein motif:HMM:PF08852.9
COORDINATES: protein motif:HMM:PF05226.9
COORDINATES: similar to AA sequence:RefSeq:WP_016868192.1
COORDINATES: protein motif:HMM:PF12770.5,HMM:PF13424.4
COORDINATES: similar to AA sequence:RefSeq:WP_012407788.1
COORDINATES: similar to AA sequence:RefSeq:WP_017750199.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004161171.1
COORDINATES: protein motif:HMM:PF00589.20
COORDINATES: similar to AA sequence:RefSeq:WP_015126641.1
COORDINATES: protein motif:HMM:PF00400.30
COORDINATES: similar to AA sequence:RefSeq:WP_017653047.1
sigma-70 family RNA polymerase sigma factor
COORDINATES: similar to AA sequence:RefSeq:WP_015119666.1
COORDINATES: similar to AA sequence:RefSeq:WP_015122141.1
S-layer homology domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015116194.1
COORDINATES: similar to AA sequence:RefSeq:WP_002745189.1
COORDINATES: similar to AA sequence:RefSeq:WP_008243166.1
COORDINATES: similar to AA sequence:RefSeq:WP_008292875.1
COORDINATES: similar to AA sequence:RefSeq:WP_008292873.1
COORDINATES: similar to AA sequence:RefSeq:WP_016865428.1
COORDINATES: similar to AA sequence:RefSeq:WP_019490266.1
incomplete; partial in the middle of a contig; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017308709.1
incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017315955.1
23S ribosomal RNA rRNA prediction is too short
COORDINATES: protein motif:HMM:PF14104.4
COORDINATES: protein motif:HMM:PF00805.20
COORDINATES: similar to AA sequence:RefSeq:WP_012168437.1
COORDINATES: similar to AA sequence:RefSeq:WP_004162658.1
COORDINATES: protein motif:HMM:PF13365.4
COORDINATES: similar to AA sequence:RefSeq:WP_016877500.1
COORDINATES: similar to AA sequence:RefSeq:WP_015078942.1
COORDINATES: similar to AA sequence:RefSeq:WP_015137436.1
COORDINATES: similar to AA sequence:RefSeq:WP_007308090.1
COORDINATES: similar to AA sequence:RefSeq:WP_017317618.1
COORDINATES: similar to AA sequence:RefSeq:WP_019496605.1
COORDINATES: similar to AA sequence:RefSeq:WP_015364313.1
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_015364314.1
COORDINATES: similar to AA sequence:RefSeq:WP_016864132.1
incomplete; partial in the middle of a contig; missing start and stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011316387.1
COORDINATES: similar to AA sequence:RefSeq:WP_015196019.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015196020.1
COORDINATES: similar to AA sequence:RefSeq:WP_015152095.1
RAMP superfamily CRISPR-associated protein
COORDINATES: similar to AA sequence:RefSeq:WP_016949985.1
COORDINATES: similar to AA sequence:RefSeq:WP_007357722.1
COORDINATES: protein motif:HMM:TIGR03986
TIGR03986 family CRISPR-associated RAMP protein
COORDINATES: similar to AA sequence:RefSeq:WP_009786203.1
COORDINATES: similar to AA sequence:RefSeq:WP_020479980.1
COORDINATES: similar to AA sequence:RefSeq:WP_015217583.1
COORDINATES: similar to AA sequence:RefSeq:WP_017747903.1
DevR family CRISPR-associated autoregulator
COORDINATES: similar to AA sequence:RefSeq:WP_017747904.1
COORDINATES: similar to AA sequence:RefSeq:WP_015217586.1
CRISPR system precrRNA processing endoribonuclease RAMP protein Cas6
COORDINATES: similar to AA sequence:RefSeq:WP_006529928.1
COORDINATES: similar to AA sequence:RefSeq:WP_015783161.1
type I-D CRISPR-associated endonuclease Cas1d
COORDINATES: similar to AA sequence:RefSeq:WP_017750008.1
COORDINATES: similar to AA sequence:RefSeq:WP_019491008.1
COORDINATES: similar to AA sequence:RefSeq:WP_017747915.1
COORDINATES: similar to AA sequence:RefSeq:WP_009626546.1
COORDINATES: similar to AA sequence:RefSeq:WP_015200806.1
COORDINATES: similar to AA sequence:RefSeq:WP_015152474.1
COORDINATES: similar to AA sequence:RefSeq:WP_019496165.1
COORDINATES: similar to AA sequence:RefSeq:WP_012627884.1
DDE-type integrase/transposase/recombinase
COORDINATES: similar to AA sequence:RefSeq:WP_015954508.1
COORDINATES: similar to AA sequence:RefSeq:WP_010994860.1
COORDINATES: similar to AA sequence:RefSeq:WP_019496254.1
COORDINATES: similar to AA sequence:RefSeq:WP_017741294.1
reverse transcriptase domain-containing protein
COORDINATES: protein motif:HMM:TIGR01643,HMM:TIGR03696
COORDINATES: similar to AA sequence:RefSeq:WP_017311631.1
COORDINATES: similar to AA sequence:RefSeq:WP_019497578.1
protein adenylyltransferase SelO family protein
COORDINATES: similar to AA sequence:RefSeq:WP_015199533.1
HlyD family efflux transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_007354884.1
COORDINATES: similar to AA sequence:RefSeq:WP_017748393.1
peptidase domain-containing ABC transporter
COORDINATES: similar to AA sequence:RefSeq:WP_012411215.1
COORDINATES: protein motif:HMM:PF00535.24
COORDINATES: similar to AA sequence:RefSeq:WP_017714957.1
COORDINATES: similar to AA sequence:RefSeq:WP_015179784.1
COORDINATES: similar to AA sequence:RefSeq:WP_008277162.1
COORDINATES: similar to AA sequence:RefSeq:WP_015122189.1
COORDINATES: protein motif:HMM:PF00801.18,HMM:PF01223.21,HMM:PF05345.10, HMM:PF07705.9
COORDINATES: similar to AA sequence:RefSeq:WP_017740856.1
COORDINATES: similar to AA sequence:RefSeq:WP_016951334.1
COORDINATES: similar to AA sequence:RefSeq:WP_016860119.1
COORDINATES: similar to AA sequence:RefSeq:WP_015116166.1
COORDINATES: similar to AA sequence:RefSeq:WP_008278676.1
COORDINATES: similar to AA sequence:RefSeq:WP_017654859.1
type IV secretion system DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015120893.1
COORDINATES: similar to AA sequence:RefSeq:WP_010999767.1
COORDINATES: protein motif:HMM:PF03743.12
COORDINATES: similar to AA sequence:RefSeq:WP_017655443.1
COORDINATES: similar to AA sequence:RefSeq:WP_015179980.1
COORDINATES: similar to AA sequence:RefSeq:WP_010473902.1