Calothrix brevissima NIES-22 plasmid plasmid4 DNA, complete genome.
Calothrix brevissima NIES-22 (Calothrix brevissima SAG 34.79)
Bacteria; Cyanobacteriota; Cyanophyceae; Nostocales; Calotrichaceae; Calothrix.
Genome sequencing of cyanobaciteial culture collection at National Institute for Environmental Studies (NIES)
Submitted (23-JUN-2017) Contact:Yuu Hirose Toyohashi University of Technology, Department of Environmental and Life Sciences; Hibarigaoka-1-1 Tenpakucho, Toyohashi, Aichi 441-8122, Japan URL :http://mcc.nies.go.jp/ strainList.do?strainId=27&strainNumberEn=NIES-22
REFSEQ INFORMATION: The reference sequence was derived from\nAP018211.\nNBRP Genome Information Upgrading Program.: Genome sequencing of\ncyanobaciteial culture collection at National Institute for\nEnvironmental Studies (NIES).\n\nAnnotated using prokka 1.11 from http://www.vicbioinformatics.com.\nAnnotated at D-FAST https://dfast.nig.ac.jp\n\nAnnotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (released 2013). Information about the Pipeline can be\nfound here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: GS De Novo Assembler v. 2.9\nGenome Coverage :: 90x\nSequencing Technology :: Ilumina MiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Date :: 09/28/2017 12:53:55\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS+\nAnnotation Software revision :: 4.2\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 7,410\nCDS (total) :: 7,298\nGenes (coding) :: 6,977\nCDS (coding) :: 6,977\nGenes (RNA) :: 112\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 93\nncRNAs :: 4\nPseudo Genes (total) :: 321\nPseudo Genes (ambiguous residues) :: 0 of 321\nPseudo Genes (frameshifted) :: 52 of 321\nPseudo Genes (incomplete) :: 259 of 321\nPseudo Genes (internal stop) :: 55 of 321\nPseudo Genes (multiple problems) :: 37 of 321\nCRISPR Arrays :: 10\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: protein motif:HMM:PF05860.11
Derived by automated computational analysis using gene prediction method: Protein Homology.
filamentous hemagglutinin N-terminal domain-containing protein
COORDINATES: ab initio prediction:GeneMarkS+
Derived by automated computational analysis using gene prediction method: GeneMarkS+.
COORDINATES: similar to AA sequence:RefSeq:WP_016861660.1
COORDINATES: similar to AA sequence:RefSeq:WP_015081662.1
COORDINATES: similar to AA sequence:RefSeq:WP_011318981.1
COORDINATES: protein motif:HMM:PF12651.5
ribbon-helix-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_016873271.1
COORDINATES: similar to AA sequence:RefSeq:WP_010999652.1
COORDINATES: similar to AA sequence:RefSeq:WP_007306892.1
COORDINATES: similar to AA sequence:RefSeq:WP_016878611.1
prepilin-type N-terminal cleavage/methylation domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017653345.1
alternative ribosome rescue aminoacyl-tRNA hydrolase ArfB
COORDINATES: similar to AA sequence:RefSeq:WP_017308219.1
COORDINATES: similar to AA sequence:RefSeq:WP_015116131.1
COORDINATES: similar to AA sequence:RefSeq:WP_016876061.1
COORDINATES: similar to AA sequence:RefSeq:WP_016876062.1
COORDINATES: similar to AA sequence:RefSeq:WP_011316536.1
COORDINATES: similar to AA sequence:RefSeq:WP_010999907.1
COORDINATES: similar to AA sequence:RefSeq:WP_019496187.1
COORDINATES: similar to AA sequence:RefSeq:WP_010999906.1
COORDINATES: similar to AA sequence:RefSeq:WP_011316584.1
COORDINATES: similar to AA sequence:RefSeq:WP_016875017.1
S-layer homology domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_076611286.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010995241.1
low molecular weight phosphatase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_016874428.1
internal stop; incomplete; partial in the middle of a contig; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015155586.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:YP_097921.1
COORDINATES: similar to AA sequence:RefSeq:WP_015121718.1
DNA double-strand break repair nuclease NurA
COORDINATES: similar to AA sequence:RefSeq:WP_009786309.1
COORDINATES: similar to AA sequence:RefSeq:WP_015210493.1
COORDINATES: protein motif:HMM:PF08378.9
nuclease-related domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015210486.1
PhnD/SsuA/transferrin family substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_015210485.1
5'-nucleotidase, lipoprotein e(P4) family
COORDINATES: similar to AA sequence:RefSeq:WP_019497674.1
incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010999902.1
COORDINATES: similar to AA sequence:RefSeq:WP_015116152.1
COORDINATES: similar to AA sequence:RefSeq:WP_015121967.1
COORDINATES: similar to AA sequence:RefSeq:WP_009543444.1
COORDINATES: protein motif:HMM:PF05901.9
excalibur calcium-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015116163.1
incomplete; partial in the middle of a contig; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012412871.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012412872.1
COORDINATES: similar to AA sequence:RefSeq:WP_017313939.1
COORDINATES: similar to AA sequence:RefSeq:WP_011319654.1
COORDINATES: protein motif:HMM:PF00575.21
S1 RNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_016953716.1
COORDINATES: similar to AA sequence:RefSeq:WP_015136525.1
COORDINATES: similar to AA sequence:RefSeq:WP_008177582.1
COORDINATES: similar to AA sequence:RefSeq:WP_016869160.1
COORDINATES: similar to AA sequence:RefSeq:WP_016877636.1
COORDINATES: similar to AA sequence:RefSeq:WP_017741147.1
COORDINATES: similar to AA sequence:RefSeq:WP_015172822.1
COORDINATES: similar to AA sequence:RefSeq:WP_015121009.1
COORDINATES: similar to AA sequence:RefSeq:WP_019488447.1
COORDINATES: protein motif:HMM:PF00004.27
COORDINATES: protein motif:HMM:PF05406.13
COORDINATES: protein motif:HMM:PF13599.4
COORDINATES: similar to AA sequence:RefSeq:WP_015130510.1
COORDINATES: similar to AA sequence:RefSeq:WP_006194723.1
COORDINATES: similar to AA sequence:RefSeq:WP_019495923.1
COORDINATES: similar to AA sequence:RefSeq:WP_010999851.1
COORDINATES: similar to AA sequence:RefSeq:WP_016948813.1
COORDINATES: similar to AA sequence:RefSeq:WP_015137266.1
frameshifted; incomplete; partial in the middle of a contig; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:PF05226.9
COORDINATES: similar to AA sequence:RefSeq:WP_006100082.1
COORDINATES: protein motif:HMM:PF12770.5,HMM:PF13176.4,HMM:PF13424.4
COORDINATES: similar to AA sequence:RefSeq:WP_016863747.1
COORDINATES: similar to AA sequence:RefSeq:WP_015174683.1
COORDINATES: similar to AA sequence:RefSeq:WP_015174684.1
COORDINATES: protein motif:HMM:PF13032.4
COORDINATES: similar to AA sequence:RefSeq:WP_017307957.1
COORDINATES: similar to AA sequence:RefSeq:WP_017307958.1
COORDINATES: similar to AA sequence:RefSeq:WP_015196105.1
COORDINATES: similar to AA sequence:RefSeq:WP_015120880.1
COORDINATES: similar to AA sequence:RefSeq:WP_015117867.1
COORDINATES: similar to AA sequence:RefSeq:WP_015120877.1
COORDINATES: similar to AA sequence:RefSeq:WP_015215979.1
HNH endonuclease signature motif containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015114411.1
COORDINATES: similar to AA sequence:RefSeq:WP_015117860.1
COORDINATES: similar to AA sequence:RefSeq:WP_015117859.1
COORDINATES: similar to AA sequence:RefSeq:WP_017307971.1
COORDINATES: similar to AA sequence:RefSeq:WP_006102370.1
type IV secretion system DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015198316.1
COORDINATES: similar to AA sequence:RefSeq:WP_015186105.1
COORDINATES: similar to AA sequence:RefSeq:WP_015198232.1
COORDINATES: similar to AA sequence:RefSeq:WP_015120854.1
COORDINATES: similar to AA sequence:RefSeq:WP_015120853.1
COORDINATES: similar to AA sequence:RefSeq:WP_017307978.1
COORDINATES: similar to AA sequence:RefSeq:WP_015120851.1
COORDINATES: similar to AA sequence:RefSeq:WP_017307980.1
COORDINATES: similar to AA sequence:RefSeq:WP_017314094.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015185228.1
COORDINATES: similar to AA sequence:RefSeq:WP_015111366.1
incomplete; partial in the middle of a contig; missing start and stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:PF00109.24,HMM:PF00698.19
COORDINATES: similar to AA sequence:RefSeq:WP_008191784.1
COORDINATES: similar to AA sequence:RefSeq:WP_017308146.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing start and stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015173891.1
COORDINATES: similar to AA sequence:RefSeq:WP_011316655.1
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_006197139.1
COORDINATES: similar to AA sequence:RefSeq:WP_006197138.1
frameshifted; incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017307709.1
COORDINATES: similar to AA sequence:RefSeq:WP_010999640.1
COORDINATES: similar to AA sequence:RefSeq:WP_017311558.1
COORDINATES: similar to AA sequence:RefSeq:WP_015186413.1
COORDINATES: similar to AA sequence:RefSeq:WP_015186414.1
COORDINATES: similar to AA sequence:RefSeq:WP_017654893.1
COORDINATES: similar to AA sequence:RefSeq:WP_015116164.1
COORDINATES: similar to AA sequence:RefSeq:WP_010999564.1
COORDINATES: similar to AA sequence:RefSeq:WP_017655392.1
COORDINATES: similar to AA sequence:RefSeq:WP_016869888.1
COORDINATES: protein motif:HMM:PF01483.18,HMM:PF05860.11
COORDINATES: protein motif:HMM:PF13385.4
LamG-like jellyroll fold domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017655424.1
COORDINATES: protein motif:HMM:PF13751.4
COORDINATES: similar to AA sequence:RefSeq:WP_017319314.1
COORDINATES: protein motif:HMM:PF02493.18
COORDINATES: similar to AA sequence:RefSeq:WP_017743033.1
COORDINATES: protein motif:HMM:PF01541.22
COORDINATES: similar to AA sequence:RefSeq:WP_017740830.1
COORDINATES: similar to AA sequence:RefSeq:WP_017308014.1
COORDINATES: similar to AA sequence:RefSeq:WP_015217789.1
COORDINATES: similar to AA sequence:RefSeq:WP_015173969.1
COORDINATES: similar to AA sequence:RefSeq:WP_016948725.1