Calothrix brevissima NIES-22 plasmid plasmid3 DNA, complete genome.
Calothrix brevissima NIES-22 (Calothrix brevissima SAG 34.79)
Bacteria; Cyanobacteriota; Cyanophyceae; Nostocales; Calotrichaceae; Calothrix.
Genome sequencing of cyanobaciteial culture collection at National Institute for Environmental Studies (NIES)
Submitted (23-JUN-2017) Contact:Yuu Hirose Toyohashi University of Technology, Department of Environmental and Life Sciences; Hibarigaoka-1-1 Tenpakucho, Toyohashi, Aichi 441-8122, Japan URL :http://mcc.nies.go.jp/ strainList.do?strainId=27&strainNumberEn=NIES-22
REFSEQ INFORMATION: The reference sequence was derived from\nAP018210.\nNBRP Genome Information Upgrading Program.: Genome sequencing of\ncyanobaciteial culture collection at National Institute for\nEnvironmental Studies (NIES).\n\nAnnotated using prokka 1.11 from http://www.vicbioinformatics.com.\nAnnotated at D-FAST https://dfast.nig.ac.jp\n\nAnnotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (released 2013). Information about the Pipeline can be\nfound here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: GS De Novo Assembler v. 2.9\nGenome Coverage :: 90x\nSequencing Technology :: Ilumina MiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Date :: 09/28/2017 12:53:55\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS+\nAnnotation Software revision :: 4.2\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 7,410\nCDS (total) :: 7,298\nGenes (coding) :: 6,977\nCDS (coding) :: 6,977\nGenes (RNA) :: 112\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 93\nncRNAs :: 4\nPseudo Genes (total) :: 321\nPseudo Genes (ambiguous residues) :: 0 of 321\nPseudo Genes (frameshifted) :: 52 of 321\nPseudo Genes (incomplete) :: 259 of 321\nPseudo Genes (internal stop) :: 55 of 321\nPseudo Genes (multiple problems) :: 37 of 321\nCRISPR Arrays :: 10\n##Genome-Annotation-Data-END##
COORDINATES: similar to AA sequence:RefSeq:WP_015149508.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS+
Derived by automated computational analysis using gene prediction method: GeneMarkS+.
COORDINATES: similar to AA sequence:RefSeq:WP_014274330.1
TaqI-like C-terminal specificity domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013324825.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007358218.1
COORDINATES: protein motif:HMM:PF04266.12
COORDINATES: similar to AA sequence:RefSeq:WP_011316581.1
COORDINATES: similar to AA sequence:RefSeq:WP_016864129.1
incomplete; partial in the middle of a contig; missing start and stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_016865428.1
incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_016862896.1
internal stop; incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015179877.1
COORDINATES: similar to AA sequence:RefSeq:WP_015179967.1
COORDINATES: protein motif:HMM:PF13148.4
COORDINATES: similar to AA sequence:RefSeq:WP_010999657.1
COORDINATES: protein motif:HMM:PF07878.9
COORDINATES: similar to AA sequence:RefSeq:WP_019505528.1
COORDINATES: similar to AA sequence:RefSeq:WP_014003879.1
COORDINATES: similar to AA sequence:RefSeq:WP_015116152.1
COORDINATES: similar to AA sequence:RefSeq:WP_015217703.1
COORDINATES: similar to AA sequence:RefSeq:WP_006625378.1
incomplete; too short partial abutting assembly gap; missing start; Derived by automated computational analysis using gene prediction method: GeneMarkS+.