Calothrix brevissima NIES-22 plasmid plasmid2 DNA, complete genome.
Calothrix brevissima NIES-22 (Calothrix brevissima SAG 34.79)
Bacteria; Cyanobacteriota; Cyanophyceae; Nostocales; Calotrichaceae; Calothrix.
Genome sequencing of cyanobaciteial culture collection at National Institute for Environmental Studies (NIES)
Submitted (23-JUN-2017) Contact:Yuu Hirose Toyohashi University of Technology, Department of Environmental and Life Sciences; Hibarigaoka-1-1 Tenpakucho, Toyohashi, Aichi 441-8122, Japan URL :http://mcc.nies.go.jp/ strainList.do?strainId=27&strainNumberEn=NIES-22
REFSEQ INFORMATION: The reference sequence was derived from\nAP018209.\nNBRP Genome Information Upgrading Program.: Genome sequencing of\ncyanobaciteial culture collection at National Institute for\nEnvironmental Studies (NIES).\n\nAnnotated using prokka 1.11 from http://www.vicbioinformatics.com.\nAnnotated at D-FAST https://dfast.nig.ac.jp\n\nAnnotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (released 2013). Information about the Pipeline can be\nfound here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: GS De Novo Assembler v. 2.9\nGenome Coverage :: 90x\nSequencing Technology :: Ilumina MiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Date :: 09/28/2017 12:53:55\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS+\nAnnotation Software revision :: 4.2\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 7,410\nCDS (total) :: 7,298\nGenes (coding) :: 6,977\nCDS (coding) :: 6,977\nGenes (RNA) :: 112\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 93\nncRNAs :: 4\nPseudo Genes (total) :: 321\nPseudo Genes (ambiguous residues) :: 0 of 321\nPseudo Genes (frameshifted) :: 52 of 321\nPseudo Genes (incomplete) :: 259 of 321\nPseudo Genes (internal stop) :: 55 of 321\nPseudo Genes (multiple problems) :: 37 of 321\nCRISPR Arrays :: 10\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS+
Derived by automated computational analysis using gene prediction method: GeneMarkS+.
COORDINATES: similar to AA sequence:RefSeq:WP_019496014.1
incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:PF06527.9
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_019496165.1
COORDINATES: similar to AA sequence:RefSeq:WP_012627884.1
DDE-type integrase/transposase/recombinase
COORDINATES: similar to AA sequence:RefSeq:WP_010999634.1
COORDINATES: similar to AA sequence:RefSeq:WP_015217660.1
HNH endonuclease signature motif containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011316437.1
COORDINATES: similar to AA sequence:RefSeq:WP_008181721.1
crystal structure of protein from Xanthomonas shows pentameric toroidal structure; physiological function is unknown; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015217662.1
COORDINATES: similar to AA sequence:RefSeq:WP_017653105.1
COORDINATES: similar to AA sequence:RefSeq:WP_011321280.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017311721.1
COORDINATES: similar to AA sequence:RefSeq:WP_016948799.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413313.1
COORDINATES: similar to AA sequence:RefSeq:WP_016879864.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413047.1
COORDINATES: similar to AA sequence:RefSeq:WP_017655229.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_012412867.1
COORDINATES: similar to AA sequence:RefSeq:WP_012412866.1
COORDINATES: similar to AA sequence:RefSeq:WP_012412865.1
COORDINATES: similar to AA sequence:RefSeq:WP_010994102.1
COORDINATES: similar to AA sequence:RefSeq:WP_012412863.1
COORDINATES: similar to AA sequence:RefSeq:WP_010994099.1
COORDINATES: similar to AA sequence:RefSeq:WP_010994098.1
COORDINATES: similar to AA sequence:RefSeq:WP_012412860.1
COORDINATES: similar to AA sequence:RefSeq:WP_010994096.1
COORDINATES: similar to AA sequence:RefSeq:WP_012412858.1
type IV secretion system DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012412857.1
COORDINATES: similar to AA sequence:RefSeq:WP_012412856.1
COORDINATES: similar to AA sequence:RefSeq:WP_012412855.1
COORDINATES: similar to AA sequence:RefSeq:WP_012412854.1
COORDINATES: similar to AA sequence:RefSeq:WP_010994090.1
COORDINATES: similar to AA sequence:RefSeq:WP_010994089.1
COORDINATES: similar to AA sequence:RefSeq:WP_010994088.1
COORDINATES: similar to AA sequence:RefSeq:WP_012412850.1
COORDINATES: similar to AA sequence:RefSeq:WP_010994087.1
COORDINATES: similar to AA sequence:RefSeq:WP_012412847.1
COORDINATES: similar to AA sequence:RefSeq:WP_017654877.1
internal stop; incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015130199.1
incomplete; partial in the middle of a contig; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011316299.1
COORDINATES: similar to AA sequence:RefSeq:WP_016859623.1
COORDINATES: protein motif:HMM:PF12796.5
ankyrin repeat domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019095367.1
COORDINATES: similar to AA sequence:RefSeq:WP_016868467.1
COORDINATES: similar to AA sequence:RefSeq:WP_011316397.1
COORDINATES: similar to AA sequence:RefSeq:WP_015111611.1
sigma-70 factor domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010999580.1
COORDINATES: similar to AA sequence:RefSeq:WP_011316405.1
COORDINATES: similar to AA sequence:RefSeq:WP_015328934.1
COORDINATES: similar to AA sequence:RefSeq:WP_019489657.1
COORDINATES: similar to AA sequence:RefSeq:WP_010996656.1
COORDINATES: similar to AA sequence:RefSeq:WP_017745816.1
COORDINATES: similar to AA sequence:RefSeq:WP_017316485.1
COORDINATES: similar to AA sequence:RefSeq:WP_017655405.1
COORDINATES: similar to AA sequence:RefSeq:WP_015115663.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413099.1
COORDINATES: similar to AA sequence:RefSeq:WP_006197200.1
COORDINATES: similar to AA sequence:RefSeq:WP_011316567.1
COORDINATES: similar to AA sequence:RefSeq:WP_002791562.1
COORDINATES: similar to AA sequence:RefSeq:WP_015196055.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413187.1
COORDINATES: similar to AA sequence:RefSeq:WP_006197189.1
COORDINATES: similar to AA sequence:RefSeq:WP_011316571.1
COORDINATES: similar to AA sequence:RefSeq:WP_019494969.1
COORDINATES: similar to AA sequence:RefSeq:WP_015210727.1
COORDINATES: similar to AA sequence:RefSeq:WP_015210728.1
COORDINATES: similar to AA sequence:RefSeq:WP_017741309.1
COORDINATES: similar to AA sequence:RefSeq:WP_000102841.1
COORDINATES: similar to AA sequence:RefSeq:WP_016864587.1
DISARM system phospholipase D-like protein DrmC
COORDINATES: similar to AA sequence:RefSeq:WP_015115432.1
COORDINATES: similar to AA sequence:RefSeq:WP_015125917.1
COORDINATES: similar to AA sequence:RefSeq:WP_011316688.1
COORDINATES: similar to AA sequence:RefSeq:WP_015115427.1
COORDINATES: similar to AA sequence:RefSeq:WP_011321256.1
COORDINATES: similar to AA sequence:RefSeq:WP_017316505.1
COORDINATES: similar to AA sequence:RefSeq:WP_011316606.1
COORDINATES: similar to AA sequence:RefSeq:WP_019488488.1
COORDINATES: similar to AA sequence:RefSeq:WP_010999692.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413262.1
alpha-ketoglutarate-dependent dioxygenase AlkB
COORDINATES: similar to AA sequence:RefSeq:WP_016864608.1
COORDINATES: similar to AA sequence:RefSeq:WP_012408605.1
COORDINATES: protein motif:HMM:PF00656.20
COORDINATES: similar to AA sequence:RefSeq:WP_015197909.1
COORDINATES: similar to AA sequence:RefSeq:WP_015183121.1
COORDINATES: similar to AA sequence:RefSeq:WP_015197912.1
COORDINATES: similar to AA sequence:RefSeq:WP_015197913.1
CHAT domain-containing tetratricopeptide repeat protein
COORDINATES: similar to AA sequence:RefSeq:WP_015197915.1
COORDINATES: protein motif:HMM:PF12770.5,HMM:PF13181.4,HMM:PF13424.4
COORDINATES: similar to AA sequence:RefSeq:WP_019493856.1
COORDINATES: similar to AA sequence:RefSeq:WP_017747782.1
COORDINATES: similar to AA sequence:RefSeq:WP_015197918.1
COORDINATES: similar to AA sequence:RefSeq:WP_016864605.1
COORDINATES: similar to AA sequence:RefSeq:WP_016864606.1
COORDINATES: similar to AA sequence:RefSeq:WP_015130273.1
COORDINATES: similar to AA sequence:RefSeq:WP_010998180.1
COORDINATES: similar to AA sequence:RefSeq:WP_015200594.1
COORDINATES: similar to AA sequence:RefSeq:WP_019495997.1
COORDINATES: similar to AA sequence:RefSeq:WP_019495998.1
COORDINATES: similar to AA sequence:RefSeq:WP_019495999.1
COORDINATES: similar to AA sequence:RefSeq:WP_011320668.1
COORDINATES: similar to AA sequence:RefSeq:WP_015120029.1
COORDINATES: similar to AA sequence:RefSeq:WP_019496002.1
COORDINATES: similar to AA sequence:RefSeq:WP_015198288.1
COORDINATES: similar to AA sequence:RefSeq:WP_019496004.1
COORDINATES: similar to AA sequence:RefSeq:WP_015198292.1
COORDINATES: similar to AA sequence:RefSeq:WP_011320696.1
COORDINATES: similar to AA sequence:RefSeq:WP_015198154.1
COORDINATES: similar to AA sequence:RefSeq:WP_015198153.1
COORDINATES: similar to AA sequence:RefSeq:WP_015198294.1
COORDINATES: similar to AA sequence:RefSeq:WP_010995990.1
COORDINATES: similar to AA sequence:RefSeq:WP_011320699.1
COORDINATES: similar to AA sequence:RefSeq:WP_015126641.1
COORDINATES: similar to AA sequence:RefSeq:WP_019496015.1
COORDINATES: similar to AA sequence:RefSeq:WP_015196258.1
COORDINATES: similar to AA sequence:RefSeq:WP_015156943.1
COORDINATES: protein motif:HMM:PF13673.5
COORDINATES: similar to AA sequence:RefSeq:WP_010999652.1
COORDINATES: similar to AA sequence:RefSeq:WP_015121970.1
rhodanese-like domain-containing protein
COORDINATES: protein motif:HMM:PF01757.20
COORDINATES: similar to AA sequence:RefSeq:WP_015204361.1
COORDINATES: similar to AA sequence:RefSeq:WP_015155937.1
COORDINATES: similar to AA sequence:RefSeq:WP_019496605.1
COORDINATES: protein motif:HMM:PF13518.4
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012412535.1
COORDINATES: similar to AA sequence:RefSeq:WP_015123594.1
COORDINATES: similar to AA sequence:RefSeq:WP_015123595.1
COORDINATES: similar to AA sequence:RefSeq:WP_015179641.1
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_017654906.1
COORDINATES: similar to AA sequence:RefSeq:WP_016876776.1
COORDINATES: similar to AA sequence:RefSeq:WP_006196382.1
COORDINATES: protein motif:HMM:PF16193.3
COORDINATES: protein motif:HMM:PF12002.6
COORDINATES: similar to AA sequence:RefSeq:WP_015149256.1
COORDINATES: similar to AA sequence:RefSeq:WP_017307709.1
COORDINATES: similar to AA sequence:RefSeq:WP_016863656.1
COORDINATES: similar to AA sequence:RefSeq:WP_017749224.1
COORDINATES: similar to AA sequence:RefSeq:WP_017747608.1
COORDINATES: similar to AA sequence:RefSeq:WP_017743046.1
3-oxoacyl-[acyl-carrier-protein] synthase III C-terminal domain-containing protein
COORDINATES: protein motif:HMM:PF05729.10,HMM:PF08662.9,HMM:PF12894.5
COORDINATES: protein motif:HMM:PF01471.16,HMM:PF13432.4
COORDINATES: protein motif:HMM:PF00656.20,HMM:PF13676.4
COORDINATES: similar to AA sequence:RefSeq:WP_017316806.1
COORDINATES: similar to AA sequence:RefSeq:WP_016874257.1
COORDINATES: protein motif:HMM:PF16576.3
HlyD family efflux transporter periplasmic adaptor subunit