Calothrix brevissima NIES-22 plasmid plasmid1 DNA, complete genome.
Calothrix brevissima NIES-22 (Calothrix brevissima SAG 34.79)
Bacteria; Cyanobacteriota; Cyanophyceae; Nostocales; Calotrichaceae; Calothrix.
Genome sequencing of cyanobaciteial culture collection at National Institute for Environmental Studies (NIES)
Submitted (23-JUN-2017) Contact:Yuu Hirose Toyohashi University of Technology, Department of Environmental and Life Sciences; Hibarigaoka-1-1 Tenpakucho, Toyohashi, Aichi 441-8122, Japan URL :http://mcc.nies.go.jp/ strainList.do?strainId=27&strainNumberEn=NIES-22
REFSEQ INFORMATION: The reference sequence was derived from\nAP018208.\nNBRP Genome Information Upgrading Program.: Genome sequencing of\ncyanobaciteial culture collection at National Institute for\nEnvironmental Studies (NIES).\n\nAnnotated using prokka 1.11 from http://www.vicbioinformatics.com.\nAnnotated at D-FAST https://dfast.nig.ac.jp\n\nAnnotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (released 2013). Information about the Pipeline can be\nfound here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: GS De Novo Assembler v. 2.9\nGenome Coverage :: 90x\nSequencing Technology :: Ilumina MiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Date :: 09/28/2017 12:53:55\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS+\nAnnotation Software revision :: 4.2\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 7,410\nCDS (total) :: 7,298\nGenes (coding) :: 6,977\nCDS (coding) :: 6,977\nGenes (RNA) :: 112\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 93\nncRNAs :: 4\nPseudo Genes (total) :: 321\nPseudo Genes (ambiguous residues) :: 0 of 321\nPseudo Genes (frameshifted) :: 52 of 321\nPseudo Genes (incomplete) :: 259 of 321\nPseudo Genes (internal stop) :: 55 of 321\nPseudo Genes (multiple problems) :: 37 of 321\nCRISPR Arrays :: 10\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: protein motif:HMM:PF06080.10
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_016875542.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:NP_396324.2
COORDINATES: similar to AA sequence:RefSeq:WP_015181262.1
COORDINATES: protein motif:HMM:PF01370.19
NAD-dependent epimerase/dehydratase family protein
COORDINATES: ab initio prediction:GeneMarkS+
Derived by automated computational analysis using gene prediction method: GeneMarkS+.
COORDINATES: protein motif:HMM:PF13489.4
COORDINATES: similar to AA sequence:RefSeq:WP_017291494.1
COORDINATES: similar to AA sequence:RefSeq:WP_020739608.1
glutathione S-transferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012408902.1
COORDINATES: similar to AA sequence:RefSeq:WP_012408901.1
COORDINATES: similar to AA sequence:RefSeq:WP_013334931.1
COORDINATES: similar to AA sequence:RefSeq:WP_011686994.1
COORDINATES: similar to AA sequence:RefSeq:WP_016876182.1
COORDINATES: similar to AA sequence:RefSeq:WP_016860356.1
COORDINATES: similar to AA sequence:RefSeq:WP_015189961.1
peptidase domain-containing ABC transporter
COORDINATES: similar to AA sequence:RefSeq:WP_014258889.1
glycine zipper domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_016863090.1
HlyD family efflux transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_012413305.1
COORDINATES: similar to AA sequence:RefSeq:WP_007917548.1
COORDINATES: similar to AA sequence:RefSeq:WP_016875860.1
COORDINATES: similar to AA sequence:RefSeq:WP_010999790.1
COORDINATES: similar to AA sequence:RefSeq:WP_019496605.1
COORDINATES: similar to AA sequence:RefSeq:WP_016860179.1
COORDINATES: similar to AA sequence:RefSeq:WP_019496216.1
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_011316407.1
incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_016876776.1
COORDINATES: similar to AA sequence:RefSeq:WP_017307709.1
COORDINATES: similar to AA sequence:RefSeq:WP_016863656.1
COORDINATES: protein motif:HMM:NF012211.1,HMM:PF00801.18,HMM:PF01223.21, HMM:PF03160.12
COORDINATES: similar to AA sequence:RefSeq:WP_015217687.1
COORDINATES: similar to AA sequence:RefSeq:WP_017748853.1
COORDINATES: similar to AA sequence:RefSeq:WP_012599531.1
COORDINATES: similar to AA sequence:RefSeq:WP_015117840.1
COORDINATES: similar to AA sequence:RefSeq:WP_015217660.1
HNH endonuclease signature motif containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011316437.1
COORDINATES: similar to AA sequence:RefSeq:WP_008181721.1
crystal structure of protein from Xanthomonas shows pentameric toroidal structure; physiological function is unknown; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015217662.1
COORDINATES: similar to AA sequence:RefSeq:WP_011316482.1
COORDINATES: protein motif:HMM:PF05729.10
COORDINATES: protein motif:HMM:PF06527.9
COORDINATES: similar to AA sequence:RefSeq:WP_019496165.1
COORDINATES: similar to AA sequence:RefSeq:WP_012627884.1
DDE-type integrase/transposase/recombinase
COORDINATES: similar to AA sequence:RefSeq:WP_016948733.1
incomplete; partial in the middle of a contig; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015155937.1
COORDINATES: similar to AA sequence:RefSeq:WP_015364290.1
COORDINATES: similar to AA sequence:RefSeq:WP_017312495.1
COORDINATES: similar to AA sequence:RefSeq:WP_010995700.1
RNA-guided endonuclease TnpB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_015364284.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_015179682.1
COORDINATES: similar to AA sequence:RefSeq:WP_016953837.1
COORDINATES: similar to AA sequence:RefSeq:WP_017654877.1
COORDINATES: similar to AA sequence:RefSeq:WP_017654876.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_017654875.1
COORDINATES: similar to AA sequence:RefSeq:WP_015130201.1
COORDINATES: similar to AA sequence:RefSeq:WP_015364291.1
COORDINATES: similar to AA sequence:RefSeq:WP_010999841.1
COORDINATES: similar to AA sequence:RefSeq:WP_006197190.1
frameshifted; incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006197195.1
COORDINATES: similar to AA sequence:RefSeq:WP_006197194.1
COORDINATES: similar to AA sequence:RefSeq:WP_017741662.1
COORDINATES: similar to AA sequence:RefSeq:WP_010999611.1
COORDINATES: similar to AA sequence:RefSeq:WP_020601159.1
COORDINATES: similar to AA sequence:RefSeq:WP_015130784.1
COORDINATES: similar to AA sequence:RefSeq:WP_011316422.1
COORDINATES: similar to AA sequence:RefSeq:WP_011316571.1
COORDINATES: similar to AA sequence:RefSeq:WP_007354616.1
COORDINATES: similar to AA sequence:RefSeq:WP_017288470.1
COORDINATES: similar to AA sequence:RefSeq:WP_011316419.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413241.1
COORDINATES: similar to AA sequence:RefSeq:WP_006195614.1
Rpn family recombination-promoting nuclease/putative transposase
COORDINATES: similar to AA sequence:RefSeq:WP_009546238.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413238.1
COORDINATES: similar to AA sequence:RefSeq:WP_017286106.1
COORDINATES: similar to AA sequence:RefSeq:WP_015209672.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413366.1
COORDINATES: similar to AA sequence:RefSeq:WP_017311569.1
COORDINATES: similar to AA sequence:RefSeq:WP_018393136.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing start and stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017317820.1
COORDINATES: similar to AA sequence:RefSeq:WP_017747558.1
COORDINATES: similar to AA sequence:RefSeq:WP_010994171.1
COORDINATES: similar to AA sequence:RefSeq:WP_015130273.1
COORDINATES: similar to AA sequence:RefSeq:WP_010998180.1
COORDINATES: similar to AA sequence:RefSeq:WP_015198279.1
COORDINATES: similar to AA sequence:RefSeq:WP_019495998.1
COORDINATES: similar to AA sequence:RefSeq:WP_019495999.1
COORDINATES: similar to AA sequence:RefSeq:WP_011320668.1
COORDINATES: similar to AA sequence:RefSeq:WP_015120029.1
COORDINATES: similar to AA sequence:RefSeq:WP_015198287.1
COORDINATES: similar to AA sequence:RefSeq:WP_015198288.1
COORDINATES: similar to AA sequence:RefSeq:WP_015198156.1
COORDINATES: similar to AA sequence:RefSeq:WP_011320696.1
COORDINATES: protein motif:HMM:PF03764.16
COORDINATES: similar to AA sequence:RefSeq:WP_015198154.1
COORDINATES: similar to AA sequence:RefSeq:WP_015198153.1
COORDINATES: similar to AA sequence:RefSeq:WP_015198294.1
COORDINATES: similar to AA sequence:RefSeq:WP_010995990.1
COORDINATES: similar to AA sequence:RefSeq:WP_019496009.1
COORDINATES: similar to AA sequence:RefSeq:WP_015198297.1
COORDINATES: similar to AA sequence:RefSeq:WP_019496015.1
COORDINATES: similar to AA sequence:RefSeq:WP_015196258.1
COORDINATES: similar to AA sequence:RefSeq:WP_015156943.1
COORDINATES: protein motif:HMM:PF00583.23
COORDINATES: similar to AA sequence:RefSeq:WP_010999652.1