Acidibrevibacterium fodinaquatile strain G45-3 plasmid unnamed3, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidibrevibacterium.
Acidisphaera fodiniaquatilis sp. nov., isolated from acidic mine drainage, and emended description of the genus Acidisphaera
Submitted (01-MAY-2018) Chinese Academic of Science, Institute of Microbiology, Beichen West Road, Beijing 100101, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP029179.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Celera Assembler v. V8.3\nExpected Final Version :: yes\nGenome Coverage :: 100.0x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/19/2023 01:55:21\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,852\nCDSs (total) :: 3,796\nGenes (coding) :: 3,682\nCDSs (with protein) :: 3,682\nGenes (RNA) :: 56\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 49\nncRNAs :: 4\nPseudo Genes (total) :: 114\nCDSs (without protein) :: 114\nPseudo Genes (ambiguous residues) :: 0 of 114\nPseudo Genes (frameshifted) :: 29 of 114\nPseudo Genes (incomplete) :: 101 of 114\nPseudo Genes (internal stop) :: 12 of 114\nPseudo Genes (multiple problems) :: 26 of 114\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Acidibrevibacterium fodinaquatile
COORDINATES: protein motif:HMM:NF013235.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013836226.1
COORDINATES: similar to AA sequence:RefSeq:WP_011078127.1
COORDINATES: similar to AA sequence:RefSeq:WP_018907203.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_018264955.1
GO:0051983 - regulation of chromosome segregation [Evidence IEA]
type II toxin-antitoxin system ParD family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_019087504.1
COORDINATES: similar to AA sequence:RefSeq:WP_019092577.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_076611842.1
GO:0004803 - transposase activity [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014198268.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF025025.2
COORDINATES: protein motif:HMM:NF015354.2
COORDINATES: similar to AA sequence:RefSeq:WP_001549957.1
COORDINATES: similar to AA sequence:RefSeq:WP_010219956.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.