Acidibrevibacterium fodinaquatile strain G45-3 plasmid unnamed3, complete sequence.
type: Entry
definition: Acidibrevibacterium fodinaquatile strain G45-3 plasmid unnamed3, complete sequence.
sequence version: NZ_CP029179.1
sequence date: 2023-03-19
sequence: sequence
division: CON
label: NZ_CP029179.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN09005679
keyword: RefSeq
source: Acidibrevibacterium fodinaquatile
organism: Acidibrevibacterium fodinaquatile
taxonomy: Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidibrevibacterium.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP029179.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Celera Assembler v. V8.3\nExpected Final Version :: yes\nGenome Coverage :: 100.0x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/19/2023 01:55:21\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,852\nCDSs (total) :: 3,796\nGenes (coding) :: 3,682\nCDSs (with protein) :: 3,682\nGenes (RNA) :: 56\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 49\nncRNAs :: 4\nPseudo Genes (total) :: 114\nCDSs (without protein) :: 114\nPseudo Genes (ambiguous residues) :: 0 of 114\nPseudo Genes (frameshifted) :: 29 of 114\nPseudo Genes (incomplete) :: 101 of 114\nPseudo Genes (internal stop) :: 12 of 114\nPseudo Genes (multiple problems) :: 26 of 114\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 16090
topology: circular
so has quality: SO_0000988
location: 1..16090
location: region:1-16090:1
RO_0002162: 1969806

NZ_CP029179
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN09005679
type: BioSample
SIO_000068: biosample

1
title: Acidisphaera fodiniaquatilis sp. nov., isolated from acidic mine drainage, and emended description of the genus Acidisphaera
author: Muhadesi, J.-B.
journal: Unpublished

2
title: Direct Submission
author: Muhadesi, J.-B.
journal: Submitted (01-MAY-2018) Chinese Academic of Science, Institute of Microbiology, Beichen West Road, Beijing 100101, China

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16090:1
position: 16090
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-16090:1:source
so part of: sequence
organism: Acidibrevibacterium fodinaquatile
mol type: genomic DNA
strain: G45-3
isolation source: acidic mine water
type material: type strain of Acidibrevibacterium fodinaquatile
plasmid: unnamed3
country: China
collection date: 2015

1969806
type: Taxonomy
SIO_000068: taxonomy

DEF76_RS19065
type: Gene
subclass of: SO_0000704
RO_0002162: 1969806
locus tag: DEF76_RS19065
so part of: sequence
location: complement(142..1071)
location: region:142-1071:-1
so has part: feature:142-1071:-1:exon
subclass of: SO_0000010

position:142:-1
position: 142
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1071:-1
position: 1071
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:142-1071:-1:exon

DEF76_RS19065
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1969806
locus tag: DEF76_RS19065
inference: COORDINATES: protein motif:HMM:NF013235.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication initiation protein
translation: MKIFTFSFHRNIYDVGMGDESPKDRVLTLNIRPRDREAIKPAELIQVSGHHELTLNARRAITILWHNAHRQGVEEGRDYTIEIDDLKPDGHKGYEMVEEAVEALMRTILTLHLPDGRTRRVQFLGGNDLDDPERPAGVLTYSFDKRLVAVLQDSTIWGKIAIPILMAFSSKYAVSLYENLAQLANLSHKTFHEYTLDEFRGLLGVPPGRYKTFGELNKHVLKPTVAEINAIAPFNVSVLPVKQGKRVAAIKVGWWPKDSEALHEAGKELERSKVGRRARLAGTVEYVFAPMPSTNRLTRQGGSFLDLDE
SIO_010081: DEF76_RS19065
subclass of: SO_0000673
so part of: DEF76_RS19065
location: complement(142..1071)
location: region:142-1071:-1
so has part: feature:142-1071:-1:exon

WP_205216234.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:142-1071:-1:exon

DEF76_RS19070
type: Gene
subclass of: SO_0000704
RO_0002162: 1969806
locus tag: DEF76_RS19070
so part of: sequence
location: complement(1166..1468)
location: region:1166-1468:-1
so has part: feature:1166-1468:-1:exon
subclass of: SO_0000010

position:1166:-1
position: 1166
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1468:-1
position: 1468
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1166-1468:-1:exon

DEF76_RS19070
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1969806
locus tag: DEF76_RS19070
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013836226.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: chromosome partitioning protein ParB
translation: MSEQSKPFVVDLKQLRSRPKDAAPAAIQTVDRAGEQYGFVAREATGRRGRPPSPRTGQVHAKVLPHIAEEIAAEATRRGVTQGTLIEEAWAIYLAHKSGK
SIO_010081: DEF76_RS19070
subclass of: SO_0000673
so part of: DEF76_RS19070
location: complement(1166..1468)
location: region:1166-1468:-1
so has part: feature:1166-1468:-1:exon

WP_114914102.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1166-1468:-1:exon

DEF76_RS19075
type: Gene
subclass of: SO_0000704
RO_0002162: 1969806
locus tag: DEF76_RS19075
so part of: sequence
location: complement(1465..2127)
location: region:1465-2127:-1
so has part: feature:1465-2127:-1:exon
subclass of: SO_0000010

position:1465:-1
position: 1465
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2127:-1
position: 2127
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1465-2127:-1:exon

DEF76_RS19075
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1969806
locus tag: DEF76_RS19075
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011078127.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family protein
translation: MPVVVIASPKGGSGKSTSAVLLGTELAHAGAQVTMLDCDPNRSLSLWGGRGELPPRMTLLADVTESDIVRTIQKHDADGGIVIVDLEGVASRLVSRAISQADLVLTPMRATTLDATIGARTLALIAEEEEALGRSIRHAVVFTMTRSIESKQHRGIEASLSGQGVDIVQPSLMERAAFSALFAFGGDLRSMPAQGRMEEAIKNASAFAQAIYQRLTEATQ
SIO_010081: DEF76_RS19075
subclass of: SO_0000673
so part of: DEF76_RS19075
location: complement(1465..2127)
location: region:1465-2127:-1
so has part: feature:1465-2127:-1:exon

WP_114914103.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1465-2127:-1:exon

DEF76_RS19080
type: Gene
subclass of: SO_0000704
RO_0002162: 1969806
locus tag: DEF76_RS19080
so part of: sequence
location: complement(2283..2594)
location: region:2283-2594:-1
so has part: feature:2283-2594:-1:exon
subclass of: SO_0000010

position:2283:-1
position: 2283
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2594:-1
position: 2594
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2283-2594:-1:exon

DEF76_RS19080
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1969806
locus tag: DEF76_RS19080
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018907203.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system RelE/ParE family toxin
translation: MAHEVIFAPEALVDLTSLYDRIAEDASPERALAYVERLQRYCLAFASFPERGMRRDDLRPGLRIIGYRRRVTIAFHITPERVIIDRVLYGGRDVEGLLADNER
SIO_010081: DEF76_RS19080
subclass of: SO_0000673
so part of: DEF76_RS19080
location: complement(2283..2594)
location: region:2283-2594:-1
so has part: feature:2283-2594:-1:exon

WP_114914104.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2283-2594:-1:exon

DEF76_RS19085
type: Gene
subclass of: SO_0000704
RO_0002162: 1969806
locus tag: DEF76_RS19085
so part of: sequence
location: complement(2584..2871)
location: region:2584-2871:-1
so has part: feature:2584-2871:-1:exon
subclass of: SO_0000010

position:2584:-1
position: 2584
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2871:-1
position: 2871
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2584-2871:-1:exon

DEF76_RS19085
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1969806
locus tag: DEF76_RS19085
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018264955.1
GO process: GO:0051983 - regulation of chromosome segregation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system ParD family antitoxin
translation: MSTTEKRTVSLPLEQTRFIDSLVSSGTYASASEVVRAGLRALQERDAAVERWLREEVVSVYDAMQADPSRGLTPDQVASAMRARHAERLKASRGA
SIO_010081: DEF76_RS19085
subclass of: SO_0000673
so part of: DEF76_RS19085
location: complement(2584..2871)
location: region:2584-2871:-1
so has part: feature:2584-2871:-1:exon

WP_114914078.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2584-2871:-1:exon

DEF76_RS19090
type: Gene
subclass of: SO_0000704
RO_0002162: 1969806
locus tag: DEF76_RS19090
so part of: sequence
location: complement(2969..3547)
location: region:2969-3547:-1
so has part: feature:2969-3547:-1:exon
subclass of: SO_0000010

position:2969:-1
position: 2969
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3547:-1
position: 3547
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2969-3547:-1:exon

DEF76_RS19090
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1969806
locus tag: DEF76_RS19090
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019087504.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: site-specific integrase
translation: MSLYDPSGARKYLTRSERDAFLAAAEHADRQVRTLGMTLAYAGCRLSEALALTIDRVDLAAGVLIFESLKKRQRGIYRAVPVPPALLSALDLVHGIREHQARRGKGRGIRLWPWSRMTGWRAIHALMQAAGLPGPHASPKGLRHSFGVTAVSAGIPLNLLQKWLGHAQLTTTAIYANATGAEEKNIASKMWE
SIO_010081: DEF76_RS19090
subclass of: SO_0000673
so part of: DEF76_RS19090
location: complement(2969..3547)
location: region:2969-3547:-1
so has part: feature:2969-3547:-1:exon

WP_114914105.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2969-3547:-1:exon

DEF76_RS19095
type: Gene
subclass of: SO_0000704
RO_0002162: 1969806
locus tag: DEF76_RS19095
so part of: sequence
location: complement(3853..4119)
location: region:3853-4119:-1
so has part: feature:3853-4119:-1:exon
subclass of: SO_0000010

position:3853:-1
position: 3853
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4119:-1
position: 4119
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3853-4119:-1:exon

DEF76_RS19095
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1969806
locus tag: DEF76_RS19095
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019092577.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: WGR domain-containing protein
translation: MAEPYQLPLFPDHARLIRIRPERNEWRFYHLAIWPDLFGRALLARYWGRIGTKGHLRLDPYPDPGAALNALAALARRKRRRGYRETSA
SIO_010081: DEF76_RS19095
subclass of: SO_0000673
so part of: DEF76_RS19095
location: complement(3853..4119)
location: region:3853-4119:-1
so has part: feature:3853-4119:-1:exon

WP_114914106.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3853-4119:-1:exon

DEF76_RS19595
type: Gene
subclass of: SO_0000704
RO_0002162: 1969806
locus tag: DEF76_RS19595
so part of: sequence
location: 4248..4409
location: region:4248-4409:1
so has part: feature:4248-4409:1:exon
subclass of: SO_0000010

position:4248:1
position: 4248
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4409:1
position: 4409
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4248-4409:1:exon

DEF76_RS19595
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1969806
locus tag: DEF76_RS19595
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAAVMVLGFEALAALLSVLSRGADGGRVFRILSGKYPEYLAENAMPFRGERAL
SIO_010081: DEF76_RS19595
subclass of: SO_0000673
so part of: DEF76_RS19595
location: 4248..4409
location: region:4248-4409:1
so has part: feature:4248-4409:1:exon

WP_162800784.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4248-4409:1:exon

DEF76_RS19100
type: Gene
subclass of: SO_0000704
RO_0002162: 1969806
locus tag: DEF76_RS19100
pseudo: true
so part of: sequence
location: complement(4675..>5382)
location: region:4675-5382:-1
so has part: feature:4675-5382:-1:exon
subclass of: SO_0000010

position:4675:-1
position: 4675
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5382:-1
position: 5382
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4675-5382:-1:exon

DEF76_RS19100
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1969806
locus tag: DEF76_RS19100
inference: COORDINATES: similar to AA sequence:RefSeq:WP_076611842.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: IS3 family transposase
SIO_010081: DEF76_RS19100
subclass of: SO_0000673
so part of: DEF76_RS19100
location: complement(4675..>5382)
location: region:4675-5382:-1
so has part: feature:4675-5382:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4675-5382:-1:exon

DEF76_RS19105
type: Gene
subclass of: SO_0000704
RO_0002162: 1969806
locus tag: DEF76_RS19105
so part of: sequence
location: 5440..6510
location: region:5440-6510:1
so has part: feature:5440-6510:1:exon
subclass of: SO_0000010

position:5440:1
position: 5440
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6510:1
position: 6510
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5440-6510:1:exon

DEF76_RS19105
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1969806
locus tag: DEF76_RS19105
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014198268.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS630 family transposase
translation: MAQTVIPIVNSADRERLAAIVEDRNRSQKHVQRARIILLSAERLTVLEVAARSGASRPSVWRWQRRFAEQGVDGLLRDKTRKPGKAPLSPATIARVLALPCGEAPKAATHWTGRMVASAVGISLSAVQRIWRAHRLQPHRIRTFKKSNDPAFAAKVEDIVGLYMNPPAHAVVVSIDEKSQIQALDRTQPGLPIKPGRCGTMTHDYKRHGTTTLFAALNVLDGTVVGRCMPRHTHQEFVRFLNAVERAVPAGKIIHAIADNYATHKHPKVREWLADHPRWVFHFTPTSASWINAVENFFSVITRRRIRRGVFTSVADLQRAIRSYIREHNRNPRPFVWTKPADDILAKLSRLPVASD
SIO_010081: DEF76_RS19105
subclass of: SO_0000673
so part of: DEF76_RS19105
location: 5440..6510
location: region:5440-6510:1
so has part: feature:5440-6510:1:exon

WP_114910930.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5440-6510:1:exon

DEF76_RS19110
type: Gene
subclass of: SO_0000704
RO_0002162: 1969806
locus tag: DEF76_RS19110
pseudo: true
so part of: sequence
location: complement(<6523..6968)
location: region:6523-6968:-1
so has part: feature:6523-6968:-1:exon
subclass of: SO_0000010

position:6523:-1
position: 6523
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:6968:-1
position: 6968
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6523-6968:-1:exon

DEF76_RS19110
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1969806
locus tag: DEF76_RS19110
inference: COORDINATES: similar to AA sequence:RefSeq:WP_076611842.1
note: frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: transposase
SIO_010081: DEF76_RS19110
subclass of: SO_0000673
so part of: DEF76_RS19110
location: complement(<6523..6968)
location: region:6523-6968:-1
so has part: feature:6523-6968:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6523-6968:-1:exon

DEF76_RS19115
type: Gene
subclass of: SO_0000704
RO_0002162: 1969806
locus tag: DEF76_RS19115
so part of: sequence
location: complement(6998..10606)
location: region:6998-10606:-1
so has part: feature:6998-10606:-1:exon
subclass of: SO_0000010

position:6998:-1
position: 6998
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10606:-1
position: 10606
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6998-10606:-1:exon

DEF76_RS19115
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1969806
locus tag: DEF76_RS19115
EC number: 2.4.-.-
inference: COORDINATES: protein motif:HMM:NF025025.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: glycosyltransferase
translation: MTQPETRRRCKLSAIVVSYNREEIIGTVLRGLQFADEVILLDKSSTDRTAEIGAAFVDRVVRVPWSPTVEETRVSMESYCTHDWVLFLDDDECLSPDAALFIDKELHEPRADLYRLPLRHYIMAQHDEDAYYWPESHIRLFRKGALRFVPTVHGGIEELSERRYDIPSDAGIAIHHLSHADVHQWIDKTNRYTSRPERVRALGEGADLAHFAHHSIDRWLKASRNATPGSYSEAVAVLRSTYDLIDRLKSWEEARGVDGRARFAELCQALDLAYETHLTPIRRPRVAGAIAPSAPPQALAATEAADPILVRANASLVSMLRQTQEAGDALRKTHERLQAETERLRAEIEQRRTETEQQQAETERLRAEIKQRWTETEQQQAEAERLRAEIEQRRTETEQQRAEAERLRAEIEQRRAETEQQRAEAERLRAEIKQRWTETEQQQANHVRLQQLVTDLAVQLKQIQLSTSWRMTGPLRLLGRQIPFVARNGRRTLRLAFWIVTGRLRQRLEERRKRRESQAALPAPAEGMVPPQPSTEQSQTQAETIHLPVSATPRVTIIIPIYGGVDYTLRCLASIAAAPPATPFEVLVADDATPGEDVLALERVSGLRFIRWPENMGFLRSCNAAAKLAKGDFLFFLNNDTEILPGAVDTLVELFDARPDAGLVGSKLIYPDGRLQEAGGIMWRDGSAWNYGNLSDPQRPEFNYVREVDYISGAAIMLPRALWEEMGGFDEHFLPAYYEDSDLAFRLRAAGWKVLYQPRSVVIHHEGITHGTDTSQGVKAHQVTNSQRFRERWRETLEREHLPNGERVLRARDRSLARRLTLVVDHYVPEPDRDGGSRAMLTFMDTLLATGRMVKFLPQNLHRTPGYTEALEARGIEVIHGPWNENAEAWLRQHGDEVDEIVLSRPSVANELLLPLRRHCRAPIVFYGHDLHFARMASEPGAQQNKTKNAAIAEMKALERRIWRMVDVVLYLSEEEVEAVRRLEPGVRAQSVPVCVLPVTPPTHKEIPDAPNLLFVGGFRHPPNVESAIWLVKEIMPLIWRDHPGASLTIIGSNPPLEVLTLAQPGVEVRGNVTDSELAAAYRMARVAICPLRSGAGVKLKVVDAMHNAVPVVTTPVGIQGMPGIESIVDIGEDATALAAAACRLLTDDTLWQQRADAQRGYVSARFSAEAMRAALVEAFAVVQSARGMRRDLPPESALAVM
SIO_010081: DEF76_RS19115
subclass of: SO_0000673
so part of: DEF76_RS19115
location: complement(6998..10606)
location: region:6998-10606:-1
so has part: feature:6998-10606:-1:exon

WP_114914107.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6998-10606:-1:exon

DEF76_RS19120
type: Gene
subclass of: SO_0000704
RO_0002162: 1969806
locus tag: DEF76_RS19120
pseudo: true
so part of: sequence
location: complement(11019..>11759)
location: region:11019-11759:-1
so has part: feature:11019-11759:-1:exon
subclass of: SO_0000010

position:11019:-1
position: 11019
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11759:-1
position: 11759
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11019-11759:-1:exon

DEF76_RS19120
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1969806
locus tag: DEF76_RS19120
inference: COORDINATES: protein motif:HMM:NF015354.2
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: MobA/MobL family protein
SIO_010081: DEF76_RS19120
subclass of: SO_0000673
so part of: DEF76_RS19120
location: complement(11019..>11759)
location: region:11019-11759:-1
so has part: feature:11019-11759:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:11019-11759:-1:exon

DEF76_RS19125
type: Gene
subclass of: SO_0000704
RO_0002162: 1969806
locus tag: DEF76_RS19125
so part of: sequence
location: complement(11928..12545)
location: region:11928-12545:-1
so has part: feature:11928-12545:-1:exon
subclass of: SO_0000010

position:11928:-1
position: 11928
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12545:-1
position: 12545
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11928-12545:-1:exon

DEF76_RS19125
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1969806
locus tag: DEF76_RS19125
inference: COORDINATES: similar to AA sequence:RefSeq:WP_001549957.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MGQRVALYCRVSTADQSCARQERDLAAFAERSGYDVVGTFKETGSGVKQDRAERRKVMALAQARHIDAVLVTELSRWGRSTTDLLATLKELEARRVSVIALNGMAFDLATPHGRMIATVLAGIAEFERELIQERIRSGIAAAKARGKRLGRQPGQRLKSDRLAPKVIALIGQGRSYRLVGRELGLSKNTVAAIAKRSRPTTNPVS
SIO_010081: DEF76_RS19125
subclass of: SO_0000673
so part of: DEF76_RS19125
location: complement(11928..12545)
location: region:11928-12545:-1
so has part: feature:11928-12545:-1:exon

WP_114914063.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11928-12545:-1:exon

DEF76_RS19130
type: Gene
subclass of: SO_0000704
RO_0002162: 1969806
locus tag: DEF76_RS19130
pseudo: true
so part of: sequence
location: 12639..15651
location: region:12639-15651:1
so has part: feature:12639-15651:1:exon
subclass of: SO_0000010

position:12639:1
position: 12639
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15651:1
position: 15651
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12639-15651:1:exon

DEF76_RS19130
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1969806
locus tag: DEF76_RS19130
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010219956.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: Tn3 family transposase
SIO_010081: DEF76_RS19130
subclass of: SO_0000673
so part of: DEF76_RS19130
location: 12639..15651
location: region:12639-15651:1
so has part: feature:12639-15651:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:12639-15651:1:exon