Acidibrevibacterium fodinaquatile strain G45-3 plasmid unnamed2, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidibrevibacterium.
Acidisphaera fodiniaquatilis sp. nov., isolated from acidic mine drainage, and emended description of the genus Acidisphaera
Submitted (01-MAY-2018) Chinese Academic of Science, Institute of Microbiology, Beichen West Road, Beijing 100101, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP029178.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Celera Assembler v. V8.3\nExpected Final Version :: yes\nGenome Coverage :: 100.0x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/19/2023 01:55:21\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,852\nCDSs (total) :: 3,796\nGenes (coding) :: 3,682\nCDSs (with protein) :: 3,682\nGenes (RNA) :: 56\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 49\nncRNAs :: 4\nPseudo Genes (total) :: 114\nCDSs (without protein) :: 114\nPseudo Genes (ambiguous residues) :: 0 of 114\nPseudo Genes (frameshifted) :: 29 of 114\nPseudo Genes (incomplete) :: 101 of 114\nPseudo Genes (internal stop) :: 12 of 114\nPseudo Genes (multiple problems) :: 26 of 114\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Acidibrevibacterium fodinaquatile
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_007425069.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007425070.1
COORDINATES: similar to AA sequence:RefSeq:WP_002731229.1
COORDINATES: protein motif:HMM:NF018050.2
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_020503046.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010512413.1
COORDINATES: similar to AA sequence:RefSeq:WP_010219956.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_001549957.1
COORDINATES: similar to AA sequence:RefSeq:WP_006869739.1
COORDINATES: similar to AA sequence:RefSeq:WP_009489589.1
COORDINATES: similar to AA sequence:RefSeq:WP_003601680.1
COORDINATES: similar to AA sequence:RefSeq:WP_003601684.1
COORDINATES: protein motif:HMM:NF033564.0
COORDINATES: similar to AA sequence:RefSeq:WP_004107652.1
type II toxin-antitoxin system VapC family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_007562278.1
COORDINATES: similar to AA sequence:RefSeq:WP_015927756.1
COORDINATES: similar to AA sequence:RefSeq:WP_015927757.1
type II toxin-antitoxin system PemK/MazF family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_015472917.1
COORDINATES: similar to AA sequence:RefSeq:WP_015472918.1
COORDINATES: similar to AA sequence:RefSeq:WP_015472919.1
COORDINATES: similar to AA sequence:RefSeq:WP_015190421.1
COORDINATES: similar to AA sequence:RefSeq:WP_010969960.1
COORDINATES: similar to AA sequence:RefSeq:WP_018264955.1
GO:0051983 - regulation of chromosome segregation [Evidence IEA]
type II toxin-antitoxin system ParD family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_019087504.1
COORDINATES: similar to AA sequence:RefSeq:WP_010517095.1
COORDINATES: protein motif:HMM:NF019654.2
GO:0003824 - catalytic activity [Evidence IEA]
GO:0018189 - pyrroloquinoline quinone biosynthetic process [Evidence IEA]
pyrroloquinoline quinone precursor peptide PqqA
COORDINATES: similar to AA sequence:RefSeq:WP_015596788.1
GO:0048038 - quinone binding [Evidence IEA]
pyrroloquinoline quinone biosynthesis peptide chaperone PqqD
COORDINATES: similar to AA sequence:RefSeq:WP_014705679.1
GO:0018149 - peptide cross-linking [Evidence IEA]; GO:0018189 - pyrroloquinoline quinone biosynthetic process [Evidence IEA]
pyrroloquinoline quinone biosynthesis protein PqqE
COORDINATES: similar to AA sequence:RefSeq:WP_015434470.1
COORDINATES: similar to AA sequence:RefSeq:WP_020087052.1
GO:0003824 - catalytic activity [Evidence IEA]; GO:0004648 - O-phospho-L-serine:2-oxoglutarate aminotransferase activity [Evidence IEA]
GO:0006564 - L-serine biosynthetic process [Evidence IEA]
3-phosphoserine/phosphohydroxythreonine transaminase
COORDINATES: protein motif:HMM:NF013355.2
COORDINATES: protein motif:HMM:NF013594.2
GO:0004222 - metalloendopeptidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012904.2
GO:0008840 - 4-hydroxy-tetrahydrodipicolinate synthase activity [Evidence IEA]
GO:0009089 - lysine biosynthetic process via diaminopimelate [Evidence IEA]
4-hydroxy-tetrahydrodipicolinate synthase
heavy-metal-associated domain-containing protein
COORDINATES: protein motif:HMM:NF013257.2
COORDINATES: protein motif:HMM:NF019310.2
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012040335.1
COORDINATES: similar to AA sequence:RefSeq:WP_019016305.1
GO:0003934 - GTP cyclohydrolase I activity [Evidence IEA]
GO:0042559 - pteridine-containing compound biosynthetic process [Evidence IEA]; GO:0046654 - tetrahydrofolate biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF024991.2