Acidibrevibacterium fodinaquatile strain G45-3 plasmid unnamed1, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidibrevibacterium.
Acidisphaera fodiniaquatilis sp. nov., isolated from acidic mine drainage, and emended description of the genus Acidisphaera
Submitted (01-MAY-2018) Chinese Academic of Science, Institute of Microbiology, Beichen West Road, Beijing 100101, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP029177.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Celera Assembler v. V8.3\nExpected Final Version :: yes\nGenome Coverage :: 100.0x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/19/2023 01:55:21\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,852\nCDSs (total) :: 3,796\nGenes (coding) :: 3,682\nCDSs (with protein) :: 3,682\nGenes (RNA) :: 56\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 49\nncRNAs :: 4\nPseudo Genes (total) :: 114\nCDSs (without protein) :: 114\nPseudo Genes (ambiguous residues) :: 0 of 114\nPseudo Genes (frameshifted) :: 29 of 114\nPseudo Genes (incomplete) :: 101 of 114\nPseudo Genes (internal stop) :: 12 of 114\nPseudo Genes (multiple problems) :: 26 of 114\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Acidibrevibacterium fodinaquatile
COORDINATES: similar to AA sequence:RefSeq:WP_003537795.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_003601684.1
GO:0004803 - transposase activity [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF013793.2
COORDINATES: similar to AA sequence:RefSeq:WP_013635138.1
COORDINATES: similar to AA sequence:RefSeq:WP_013635139.1
COORDINATES: similar to AA sequence:RefSeq:WP_013635140.1
COORDINATES: similar to AA sequence:RefSeq:WP_008838406.1
COORDINATES: similar to AA sequence:RefSeq:WP_018240679.1
COORDINATES: similar to AA sequence:RefSeq:WP_011930523.1
COORDINATES: similar to AA sequence:RefSeq:WP_011930522.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_013639361.1
COORDINATES: similar to AA sequence:RefSeq:WP_011930806.1
GO:0004386 - helicase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008964806.1
serine hydrolase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007792467.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011489125.1
COORDINATES: similar to AA sequence:RefSeq:WP_009771610.1
tat (twin-arginine translocation) pathway signal sequence
COORDINATES: similar to AA sequence:RefSeq:WP_011489123.1
COORDINATES: similar to AA sequence:RefSeq:WP_012403767.1
ribbon-helix-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013634949.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006746220.1
COORDINATES: similar to AA sequence:RefSeq:WP_018000578.1
COORDINATES: protein motif:HMM:NF024850.2
COORDINATES: similar to AA sequence:RefSeq:WP_011930855.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_015341053.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611877.1
COORDINATES: protein motif:HMM:NF025063.2
GO:0015074 - DNA integration [Evidence IEA]
integrase core domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_032490240.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_019564015.1
COORDINATES: similar to AA sequence:RefSeq:WP_018990404.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_012606161.1
sigma-54-dependent Fis family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_012115484.1
hydantoinase/oxoprolinase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010394645.1
GO:0003824 - catalytic activity [Evidence IEA]
hydantoinase B/oxoprolinase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012115486.1
COORDINATES: similar to AA sequence:RefSeq:WP_009451434.1
GO:0003864 - 3-methyl-2-oxobutanoate hydroxymethyltransferase activity [Evidence IEA]
GO:0015940 - pantothenate biosynthetic process [Evidence IEA]
3-methyl-2-oxobutanoate hydroxymethyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_006206219.1
COORDINATES: similar to AA sequence:RefSeq:WP_013762087.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:0008987 - quinolinate synthetase A activity [Evidence IEA]
GO:0009435 - NAD biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF013086.2
COORDINATES: similar to AA sequence:RefSeq:WP_011655339.1
GO:0004514 - nicotinate-nucleotide diphosphorylase (carboxylating) activity [Evidence IEA]
GO:0019363 - pyridine nucleotide biosynthetic process [Evidence IEA]
carboxylating nicotinate-nucleotide diphosphorylase
COORDINATES: similar to AA sequence:RefSeq:WP_013641226.1
COORDINATES: similar to AA sequence:RefSeq:WP_013639145.1
COORDINATES: similar to AA sequence:RefSeq:WP_014330531.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611638.1
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF024991.2
COORDINATES: similar to AA sequence:RefSeq:WP_012553520.1
COORDINATES: similar to AA sequence:RefSeq:WP_012553519.1
type II toxin-antitoxin system VapC family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_020820064.1
COORDINATES: similar to AA sequence:RefSeq:WP_007396268.1
GO:0004521 - endoribonuclease activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
putative toxin-antitoxin system toxin component, PIN family
COORDINATES: similar to AA sequence:RefSeq:WP_011083686.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0140658 - ATP-dependent chromatin remodeler activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014442.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_076611183.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018290082.1
COORDINATES: protein motif:HMM:NF017885.2
COORDINATES: similar to AA sequence:RefSeq:WP_018291146.1
COORDINATES: similar to AA sequence:RefSeq:WP_011083688.1
COORDINATES: similar to AA sequence:RefSeq:WP_011083689.1
COORDINATES: similar to AA sequence:RefSeq:WP_003515190.1
COORDINATES: similar to AA sequence:RefSeq:WP_015824338.1