Chlamydia poikilotherma strain S15-834K plasmid II, complete sequence.
type: Entry
definition: Chlamydia poikilotherma strain S15-834K plasmid II, complete sequence.
sequence version: NZ_LS992155.1
sequence date: 2023-03-16
sequence: sequence
division: CON
label: NZ_LS992155.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMEA103918594
keyword: RefSeq
source: Chlamydia poikilotherma
organism: Chlamydia poikilotherma
taxonomy: Bacteria; Chlamydiota; Chlamydiia; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia.
reference: 1
comment: REFSEQ INFORMATION: The reference sequence is identical to\nLS992155.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/16/2023 01:07:29\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 1,039\nCDSs (total) :: 995\nGenes (coding) :: 994\nCDSs (with protein) :: 994\nGenes (RNA) :: 44\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 38\nncRNAs :: 3\nPseudo Genes (total) :: 1\nCDSs (without protein) :: 1\nPseudo Genes (ambiguous residues) :: 0 of 1\nPseudo Genes (frameshifted) :: 1 of 1\nPseudo Genes (incomplete) :: 0 of 1\nPseudo Genes (internal stop) :: 0 of 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 7559
topology: circular
so has quality: SO_0000988
location: 1..7559
location: region:1-7559:1
RO_0002162: 1967783

NZ_LS992155
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMEA103918594
type: BioSample
SIO_000068: biosample

1
title: Direct Submission
author: Seth-Smith MB, H.
journal: Submitted (27-NOV-2017) Functional Genomics Genter Zurich, University Hospital Basel, 4056 Basel, Switzerland

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7559:1
position: 7559
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-7559:1:source
so part of: sequence
organism: Chlamydia poikilotherma
mol type: genomic DNA
strain: S15-834K
isolation source: Snake
host: Pantherophis guttatus
type material: type strain of Chlamydia poikilotherma
plasmid: II
country: Switzerland
collection date: 2015

1967783
type: Taxonomy
SIO_000068: taxonomy

C10C_RS05145
type: Gene
subclass of: SO_0000704
RO_0002162: 1967783
locus tag: C10C_RS05145
old locus tag: C834KP_0001
old locus tag: D2870_RS05180
so part of: sequence
location: 150..1073
location: region:150-1073:1
so has part: feature:150-1073:1:exon
subclass of: SO_0000010

position:150:1
position: 150
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1073:1
position: 1073
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:150-1073:1:exon

C10C_RS05145
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1967783
locus tag: C10C_RS05145
old locus tag: C834KP_0001
old locus tag: D2870_RS05180
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011109752.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: site-specific integrase
translation: MSGLSHYHKSRLFLTVLEAANVWLATLSPITKKNYASGIKFLISNNILDGSMKLENLVCFDHCDALNKIKSLTYTCTGKTVSEASKQARAACYISFTKFLYRLTKGLIKQASPSRDFGNSTFYKIRDKVKTEFISKKEWLVFFDSLKRISFRDYLIGKLIIQGVRKLNEVISLRTDDISFVQNQVTFKVKKRQNRYQEVKVSYPNFLMQELRDYLGNREGWVFVSGEGQQVAINQVYYYFKLAEHDINSPIKVTPHVLRASALAYLKKMGFADQEIMRVSCLSSAQMLSAYDTGKTDNLTSQLPLIF
SIO_010081: C10C_RS05145
subclass of: SO_0000673
so part of: C10C_RS05145
location: 150..1073
location: region:150-1073:1
so has part: feature:150-1073:1:exon

WP_117274799.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:150-1073:1:exon

C10C_RS05150
type: Gene
subclass of: SO_0000704
RO_0002162: 1967783
locus tag: C10C_RS05150
old locus tag: C834KP_0002
old locus tag: D2870_RS05185
so part of: sequence
location: complement(1160..2128)
location: region:1160-2128:-1
so has part: feature:1160-2128:-1:exon
subclass of: SO_0000010

position:1160:-1
position: 1160
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2128:-1
position: 2128
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1160-2128:-1:exon

C10C_RS05150
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1967783
locus tag: C10C_RS05150
old locus tag: C834KP_0002
old locus tag: D2870_RS05185
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006343679.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: site-specific integrase
translation: MFGNKVYRSNLSHQEFLSIKNERIWEGLRDIPLSEAVFVWLSCLNNHTARSYKGSILALEKIGLVSLKISLQEFALVNHNIILDSIKQVPMKIVPWSEGTKQVRAACYISLTKFLNRATSGLISIAQPSNQESNKTFYKIRDLVKTNAMNKVERITFLEALEKINHRDWLIAQTILQGAKRVTEALSITTDKISFENGTISFDQNKSRGVSKITIITYPQRFMKLMSDYVGNRLGLVFITKNGKSVGLKQLAGTFAKAGIKANISFKVTPHVLRATAVTEYKKMGCSDSDIMKVTGHSSSKMIYAYDKSTTSENASKKVSLI
SIO_010081: C10C_RS05150
subclass of: SO_0000673
so part of: C10C_RS05150
location: complement(1160..2128)
location: region:1160-2128:-1
so has part: feature:1160-2128:-1:exon

WP_174222249.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1160-2128:-1:exon

C10C_RS05155
type: Gene
subclass of: SO_0000704
RO_0002162: 1967783
locus tag: C10C_RS05155
old locus tag: C834KP_0003
old locus tag: D2870_RS05190
so part of: sequence
location: 2271..3647
location: region:2271-3647:1
so has part: feature:2271-3647:1:exon
subclass of: SO_0000010

position:2271:1
position: 2271
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3647:1
position: 3647
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2271-3647:1:exon

C10C_RS05155
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1967783
locus tag: C10C_RS05155
old locus tag: C834KP_0003
old locus tag: D2870_RS05190
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014951477.1
GO function: GO:0005524 - ATP binding [Evidence IEA]; GO:0003678 - DNA helicase activity [Evidence IEA]
GO process: GO:0006260 - DNA replication [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DnaB-like helicase C-terminal domain-containing protein
translation: MIKQSEEEKELLDVEFFVLGQAVNYLEHAHTVVRRLSENHFKLENHKNIFLLIRDILRDRDTISISLIWEEIKRRNLDKRMDVSYLIHMSQNADIPIDLDHHIDFLHEKHVNNLLKEFLDSSFQDFTRYPNRRSPYTLIDQFKERLDNIHKKTSYPRRKNIGKTVYDIFSLGDDGKNSVISQIRHRYDYRSRHQIDYVDGLPTGYLPIDENSIILSKGNFVVVAARPAMGKTAFAIDIALNLVLEQQKAVGFISLEMSPNQIVERVVSNLSEISCEQLKRGNFSRDVLSKIEDIGKRLQGTHFFICDNKSTDLNALIDQARELKESQGIDALFIDYLQLIGSNKKAENRQNEIAEISRQLRKLAGELQIPVVCLSQLSRKVEDRGDKRPMLSDLRDSGQIEQDADVILFLHRKDYYSQEATKGLSEIIIGKNRHGSVFSTNLKFNSSTGKFSVQKEAW
SIO_010081: C10C_RS05155
subclass of: SO_0000673
so part of: C10C_RS05155
location: 2271..3647
location: region:2271-3647:1
so has part: feature:2271-3647:1:exon

WP_117274792.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2271-3647:1:exon

C10C_RS05160
type: Gene
subclass of: SO_0000704
RO_0002162: 1967783
locus tag: C10C_RS05160
old locus tag: C834KP_0004
old locus tag: D2870_RS05195
so part of: sequence
location: 3641..4684
location: region:3641-4684:1
so has part: feature:3641-4684:1:exon
subclass of: SO_0000010

position:3641:1
position: 3641
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4684:1
position: 4684
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3641-4684:1:exon

C10C_RS05160
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1967783
locus tag: C10C_RS05160
old locus tag: C834KP_0004
old locus tag: D2870_RS05195
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014951478.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: virulence factor
translation: MVRSENQIIKSSLHLENQKFGRKPQLSEDQLELFSSVCTESKIEVIGLDLQPSHYHALAAIQKLLTATNYRGNLEGSYLSRETNTFKFEGTIPRIKFTKAEYLEAYGVKKYKTSRNKNEFGGKEALIALEALYHLGNEPYLIVATRKRWNKGEEVVDRYQTFSPILRICEGWEGLTPKENKALDEEPFLNLVSKKHKGFIIEPCPIIVDQIDSYFVLKPANMYQEIKLRFPNASKFTYTFIDWIVSTATRKKMNSSGLKEWPDKIEIGFENLSYTLRMNRYITSRNWKKIESAINRCIEIAIELKWLNKHERIQGKTISKKEVFYLNKNKFQQISTNKTIQNTTNNN
SIO_010081: C10C_RS05160
subclass of: SO_0000673
so part of: C10C_RS05160
location: 3641..4684
location: region:3641-4684:1
so has part: feature:3641-4684:1:exon

WP_117274793.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3641-4684:1:exon

C10C_RS05165
type: Gene
subclass of: SO_0000704
RO_0002162: 1967783
gene: pgp3
locus tag: C10C_RS05165
old locus tag: C834KP_0005
old locus tag: D2870_RS05200
so part of: sequence
location: 4739..5533
location: region:4739-5533:1
so has part: feature:4739-5533:1:exon
subclass of: SO_0000010

position:4739:1
position: 4739
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5533:1
position: 5533
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4739-5533:1:exon

C10C_RS05165
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1967783
gene: pgp3
locus tag: C10C_RS05165
old locus tag: C834KP_0005
old locus tag: D2870_RS05200
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014951470.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: virulence factor Pgp3
translation: MGNSGFYLNNNQNCVFADNIKVGQMQSPLQDQQLILGTTSTPTAAKIIAKEGLKVDITTTNNTDTSIDLSVDPDALSKLILDRIQKELVDAIIENITNSLIQEVIDKIVSDPTLALTKAFKNFSISDKIQCNGLFTKTNISTLLGGTEIGKFTITPDNTDSMFLISADIIASRMEGNVVLALVREGDSGPCAISYGYSSGIPNVCSLRTAVSNSGTTPVTFSLRVGGMESGVVWVNALANGDSILGTTTTSNISFLEVKQQTNG
SIO_010081: C10C_RS05165
subclass of: SO_0000673
so part of: C10C_RS05165
location: 4739..5533
location: region:4739-5533:1
so has part: feature:4739-5533:1:exon

WP_117274794.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4739-5533:1:exon

C10C_RS05170
type: Gene
subclass of: SO_0000704
RO_0002162: 1967783
locus tag: C10C_RS05170
old locus tag: C834KP_0006
old locus tag: D2870_RS05205
so part of: sequence
location: 5631..5939
location: region:5631-5939:1
so has part: feature:5631-5939:1:exon
subclass of: SO_0000010

position:5631:1
position: 5631
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5939:1
position: 5939
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5631-5939:1:exon

C10C_RS05170
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1967783
locus tag: C10C_RS05170
old locus tag: C834KP_0006
old locus tag: D2870_RS05205
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012209817.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: virulence factor
translation: MNDKQNMTNDFIKIVKDVEKDFPELDIKMKVHKEKITFLNSPLELYHKSISVILNLLNQIQTSLGLFPDSPIVEQMEHNNLKLKKALIMLILSRKDMFSTAE
SIO_010081: C10C_RS05170
subclass of: SO_0000673
so part of: C10C_RS05170
location: 5631..5939
location: region:5631-5939:1
so has part: feature:5631-5939:1:exon

WP_117274795.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5631-5939:1:exon

C10C_RS05175
type: Gene
subclass of: SO_0000704
RO_0002162: 1967783
locus tag: C10C_RS05175
old locus tag: C834KP_0007
old locus tag: D2870_RS05210
so part of: sequence
location: 5970..6749
location: region:5970-6749:1
so has part: feature:5970-6749:1:exon
subclass of: SO_0000010

position:5970:1
position: 5970
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6749:1
position: 6749
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5970-6749:1:exon

C10C_RS05175
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1967783
locus tag: C10C_RS05175
old locus tag: C834KP_0007
old locus tag: D2870_RS05210
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014951469.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family protein
translation: MKTLAFCSFKGGTGKTTLSLNIGSNLAQISKKRVLLVDLDPQANLTTGLGIQIHDEYGLNEVLRSSNDIKEAIHKTKIENLDIIPSSVLVEDFRGLNKDVGLSVNHLCLALQNVQSQYDICILDTPPSLGTLTQEAFLASQHLVVCLTPEPFSIIGLQKIKEFCSTIANDLDILGIVFSFWDERNSTNSTYTDIIETIYEGKILSNKVRRDITVSRSLLKESPVINVYPNSRASQDILNLTKEIENKLFFNKKLVQETL
SIO_010081: C10C_RS05175
subclass of: SO_0000673
so part of: C10C_RS05175
location: 5970..6749
location: region:5970-6749:1
so has part: feature:5970-6749:1:exon

WP_117274796.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5970-6749:1:exon

C10C_RS05180
type: Gene
subclass of: SO_0000704
RO_0002162: 1967783
locus tag: C10C_RS05180
old locus tag: C834KP_0008
old locus tag: D2870_RS05215
so part of: sequence
location: 6746..7486
location: region:6746-7486:1
so has part: feature:6746-7486:1:exon
subclass of: SO_0000010

position:6746:1
position: 6746
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7486:1
position: 7486
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6746-7486:1:exon

C10C_RS05180
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1967783
locus tag: C10C_RS05180
old locus tag: C834KP_0008
old locus tag: D2870_RS05215
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006343673.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: CT583 family protein
translation: MSKLVKEASAFFQKNQENTRKEFHKKEFAMDVFSVSLSEDEKEQIESLIVSKHSVFDDTCSRGLASIKLLTGQIKSIQKQHVLLIGEKIYKVRDILRGMNSPETTFSAWINFVFHTKSSAYNALGYYELFISLPDKNTKSLFQSIPYKTAYLLASRKGSVKDKVKVLGKIYGMSNTSAIDVLNKFLPSLRTSQTERLTNCEDKNKELSEKLMEILKTICSGLELSEYNKNLLQQLFEKTLQVNSRC
SIO_010081: C10C_RS05180
subclass of: SO_0000673
so part of: C10C_RS05180
location: 6746..7486
location: region:6746-7486:1
so has part: feature:6746-7486:1:exon

WP_117274797.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6746-7486:1:exon