Chlamydia serpentis strain H15-1957-10C plasmid II, complete sequence.
type: Entry
definition: Chlamydia serpentis strain H15-1957-10C plasmid II, complete sequence.
sequence version: NZ_LT993739.1
sequence date: 2023-03-16
sequence: sequence
division: CON
label: NZ_LT993739.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMEA103918591
keyword: RefSeq
source: Chlamydia serpentis
organism: Chlamydia serpentis
taxonomy: Bacteria; Chlamydiota; Chlamydiia; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia.
reference: 1
comment: REFSEQ INFORMATION: The reference sequence is identical to\nLT993739.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/16/2023 01:09:26\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 1,046\nCDSs (total) :: 1,002\nGenes (coding) :: 1,000\nCDSs (with protein) :: 1,000\nGenes (RNA) :: 44\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 38\nncRNAs :: 3\nPseudo Genes (total) :: 2\nCDSs (without protein) :: 2\nPseudo Genes (ambiguous residues) :: 0 of 2\nPseudo Genes (frameshifted) :: 1 of 2\nPseudo Genes (incomplete) :: 1 of 2\nPseudo Genes (internal stop) :: 0 of 2\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 7533
topology: circular
so has quality: SO_0000988
location: 1..7533
location: region:1-7533:1
RO_0002162: 1967782

NZ_LT993739
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMEA103918591
type: BioSample
SIO_000068: biosample

1
title: Direct Submission
author: Seth-Smith MB, H.
journal: Submitted (27-NOV-2017) Functional Genomics Genter Zurich, University Hospital Basel, 4056 Basel, Switzerland

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7533:1
position: 7533
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-7533:1:source
so part of: sequence
organism: Chlamydia serpentis
mol type: genomic DNA
strain: H15-1957-10C
isolation source: Snake
host: Atheris squamigera
type material: type strain of Chlamydia serpentis
plasmid: II
country: Switzerland
collection date: 2015

1967782
type: Taxonomy
SIO_000068: taxonomy

C834KP_RS05240
type: Gene
subclass of: SO_0000704
RO_0002162: 1967782
locus tag: C834KP_RS05240
old locus tag: C10CP_0001
so part of: sequence
location: 150..1079
location: region:150-1079:1
so has part: feature:150-1079:1:exon
subclass of: SO_0000010

position:150:1
position: 150
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1079:1
position: 1079
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:150-1079:1:exon

C834KP_RS05240
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1967782
locus tag: C834KP_RS05240
old locus tag: C10CP_0001
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011109752.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: site-specific integrase
translation: MRNLNHCHRSRLFLTLSEAVSIWLTTLSPITSKNYASGIKFLISNRVIDPSMRLEDLISTDHSEVLYRIKSLSFSLKGKLISEASKQARAACYISFTKFLYRLTKGVVKPAIPVRDFGNATFYKIRDKVKTEFISKKDWLLFFDSLKKRSYRDYLIGKLILQGVRKLSEVISLRTEDISFGKNQIFFKVKKRQNRIREVTVTYPSFLMNELKDYLGKREGWVFVSDPSSNHRVCVNQIYYYFKLAENDIPLQVKVTPHVLRASALAYLKKTGFSDIDIMRISCLSSQEMISAYDSYSEENLTSQLPFIF
SIO_010081: C834KP_RS05240
subclass of: SO_0000673
so part of: C834KP_RS05240
location: 150..1079
location: region:150-1079:1
so has part: feature:150-1079:1:exon

WP_174165558.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:150-1079:1:exon

C834KP_RS05245
type: Gene
subclass of: SO_0000704
RO_0002162: 1967782
locus tag: C834KP_RS05245
old locus tag: C10CP_0002
so part of: sequence
location: complement(1152..2156)
location: region:1152-2156:-1
so has part: feature:1152-2156:-1:exon
subclass of: SO_0000010

position:1152:-1
position: 1152
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2156:-1
position: 2156
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1152-2156:-1:exon

C834KP_RS05245
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1967782
locus tag: C834KP_RS05245
old locus tag: C10CP_0002
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006343679.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: site-specific integrase
translation: MRKDNSLGYGLNNIHKNLLSERLTHAQAKQAKIEYIWNGLKHITLKDAVTAWTTSLNAHTARSYKGSILALSKIGLLSLDISLQEFSMINHNVVIDSIKRLPSKITLWSEGTKQVRAACYISLTRFLNRETFGLISIAQPSQQESNKTFYKLRDVVKTNALGKIEKLNFLEQLQTINYRDWMIALTILQGAKRVNEVLDLTIDKISFQEGTISFIQTKNRGIEKVTIITYPQWFLKKINDYIGLRKGLLFITKNGKAVGLKQIATTFAKAGKLANIDFKVTPHVLRATAVTEYKRFGCSDSDIMKVTGHSSSKMIYAYDKSQRSENASKKIILI
SIO_010081: C834KP_RS05245
subclass of: SO_0000673
so part of: C834KP_RS05245
location: complement(1152..2156)
location: region:1152-2156:-1
so has part: feature:1152-2156:-1:exon

WP_231911712.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1152-2156:-1:exon

C834KP_RS05250
type: Gene
subclass of: SO_0000704
RO_0002162: 1967782
locus tag: C834KP_RS05250
old locus tag: C10CP_0003
so part of: sequence
location: 2261..3631
location: region:2261-3631:1
so has part: feature:2261-3631:1:exon
subclass of: SO_0000010

position:2261:1
position: 2261
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3631:1
position: 3631
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2261-3631:1:exon

C834KP_RS05250
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1967782
locus tag: C834KP_RS05250
old locus tag: C10CP_0003
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014518310.1
GO function: GO:0005524 - ATP binding [Evidence IEA]; GO:0003678 - DNA helicase activity [Evidence IEA]
GO process: GO:0006260 - DNA replication [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DnaB-like helicase C-terminal domain-containing protein
translation: MKASQLDKEYLDIEFVILGQAINYTENAQTVVSRLTEEHFVSPIHKKLFFFIKNLLNARGAVSISLIWEEIKRQNYDTSLDISYIVQMSQNADIHIDLDHHIDFLHEKLTNDLLKEFLDVSYGDFNRYPNRRSPFTLIDEFKERLDSIHNKIIAPRYKFIGRNVCDIINGDKETEGVLAKIRLRHTYRLEHEKDFIDGLPTGFLAIDEQSTLLCKGNFIIIAARPAMGKTAFVIDIALYLSIHEKKAVGFISLEMGSQQIVERIISNLSEISCEQLKRGNFSKTTLCKIEKISSALQASNFFICDKNCSGINALINQAKSLKYLHDIDILFIDYLQLVELDGRSENRQNEIASISRKLRLLSVDLEIPIVCLSQLSRKVEDRGDKRPLLSDLRDSGQIEQDADAILFLYRKDYYSQESIKGLTEIIIGKNRHGSTFSTHLMFNSSFGKFYSQKEVW
SIO_010081: C834KP_RS05250
subclass of: SO_0000673
so part of: C834KP_RS05250
location: 2261..3631
location: region:2261-3631:1
so has part: feature:2261-3631:1:exon

WP_108897162.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2261-3631:1:exon

C834KP_RS05255
type: Gene
subclass of: SO_0000704
RO_0002162: 1967782
locus tag: C834KP_RS05255
old locus tag: C10CP_0004
so part of: sequence
location: 3625..4641
location: region:3625-4641:1
so has part: feature:3625-4641:1:exon
subclass of: SO_0000010

position:3625:1
position: 3625
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4641:1
position: 4641
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3625-4641:1:exon

C834KP_RS05255
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1967782
locus tag: C834KP_RS05255
old locus tag: C10CP_0004
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015506342.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: virulence factor
translation: MVKTDHNIIKSSLHLENQKFGRKPQTSSDSESKIEVIGLDLQTSHYHALSAIQKLLSATNYRGNAEGAYLSRETNTFKFEGIIPRIKFSRSEYLEAYGVKKYKTSRNKYEFGGKEAVISLEALYHLGNKPYLIVATRRRWNKGEEVVDRYQTFSPILRICEGWEGLTPKENKALDEGPFINLVSTKHKGFIIEPCPIIVDQIDSYFVLKPANMYQEIKLRFPNASKFTYTFLDWIVSTATRKKMNNPTNKDWPDKIEIGFENLSYTLRMNRYITSRNWKKIETAINRCIEIAIELKWLIKHERIQGKTISKKEVFYLNKIKFQQISKNRLLESEQKPI
SIO_010081: C834KP_RS05255
subclass of: SO_0000673
so part of: C834KP_RS05255
location: 3625..4641
location: region:3625-4641:1
so has part: feature:3625-4641:1:exon

WP_108897163.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3625-4641:1:exon

C834KP_RS05260
type: Gene
subclass of: SO_0000704
RO_0002162: 1967782
gene: pgp3
locus tag: C834KP_RS05260
old locus tag: C10CP_0005
so part of: sequence
location: 4699..5502
location: region:4699-5502:1
so has part: feature:4699-5502:1:exon
subclass of: SO_0000010

position:4699:1
position: 4699
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5502:1
position: 5502
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4699-5502:1:exon

C834KP_RS05260
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1967782
gene: pgp3
locus tag: C834KP_RS05260
old locus tag: C10CP_0005
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014518312.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: virulence factor Pgp3
translation: MGNSGFYLQDTQNTIFADNIRLGQMTTVLKKDEIIIGTDSTPTVTKFSGDKGIVVATDSTTTPSKTTFSLDMESVIKEVTSKILDQIEDELVKDIIKNITQSLIEEVIKQIQIDPSFSFSRAFKDISISESIQCNGLFTKENIRNLDGGTEIAEFSVTPDNSNSMFLICANIIATRMEGTVALALVKEGDKSPCAISYGYSAGYPNVISLRATVSNATTTPVKFSLRAGGVDSGIVWVNAMPNGEKILGVETVSKITILEVKPQTNG
SIO_010081: C834KP_RS05260
subclass of: SO_0000673
so part of: C834KP_RS05260
location: 4699..5502
location: region:4699-5502:1
so has part: feature:4699-5502:1:exon

WP_108897164.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4699-5502:1:exon

C834KP_RS05265
type: Gene
subclass of: SO_0000704
RO_0002162: 1967782
locus tag: C834KP_RS05265
old locus tag: C10CP_0006
so part of: sequence
location: 5598..5903
location: region:5598-5903:1
so has part: feature:5598-5903:1:exon
subclass of: SO_0000010

position:5598:1
position: 5598
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5903:1
position: 5903
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5598-5903:1:exon

C834KP_RS05265
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1967782
locus tag: C834KP_RS05265
old locus tag: C10CP_0006
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012209817.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: virulence factor
translation: MNNKQKTNDFIRIVKDVEKAFPELDIKVKISKEKITFLNSPTELYHKSISIILDLLSRIESSLNFFPDSPIVEELANNNIKLKKALIMLILSRKDMFSKTE
SIO_010081: C834KP_RS05265
subclass of: SO_0000673
so part of: C834KP_RS05265
location: 5598..5903
location: region:5598-5903:1
so has part: feature:5598-5903:1:exon

WP_108897165.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5598-5903:1:exon

C834KP_RS05270
type: Gene
subclass of: SO_0000704
RO_0002162: 1967782
locus tag: C834KP_RS05270
old locus tag: C10CP_0007
so part of: sequence
location: 5934..6725
location: region:5934-6725:1
so has part: feature:5934-6725:1:exon
subclass of: SO_0000010

position:5934:1
position: 5934
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6725:1
position: 6725
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5934-6725:1:exon

C834KP_RS05270
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1967782
locus tag: C834KP_RS05270
old locus tag: C10CP_0007
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014951469.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family protein
translation: MKTIAFCSFKGGTGKTTLSLNIGCNLAQYHNKKVLLVDLDPQANLTTGLGTQFCSDTSLYDIFRNSGNLKDVIQRSKIKNLDIIPSSLLIEDFRVINKDSSLNINCLRSYLQLIEHNYDVCILDTPPSLGCLNREAFIAANFLIICLTPEPFSILGAQKIKEFCSTLQTENELEILGIVFSFWDDRNATNSTYLNIIESIYENKILSSKVRRDVKLSRSLLKETSVANAYPNSRANYDLLELTKEIETRLFKNVSGKRCEQTN
SIO_010081: C834KP_RS05270
subclass of: SO_0000673
so part of: C834KP_RS05270
location: 5934..6725
location: region:5934-6725:1
so has part: feature:5934-6725:1:exon

WP_108897166.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5934-6725:1:exon

C834KP_RS05275
type: Gene
subclass of: SO_0000704
RO_0002162: 1967782
locus tag: C834KP_RS05275
old locus tag: C10CP_0008
so part of: sequence
location: 6709..7491
location: region:6709-7491:1
so has part: feature:6709-7491:1:exon
subclass of: SO_0000010

position:6709:1
position: 6709
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7491:1
position: 7491
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6709-7491:1:exon

C834KP_RS05275
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1967782
locus tag: C834KP_RS05275
old locus tag: C10CP_0008
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014518307.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: CT583 family protein
translation: MSKLIKEASIFFDKNRKSAKEEFRKKEVIQDVFSISLTSSEINQLDCLFSKQSPENHNQDVFLHIKNLTSQIKSIQKQHVLLIGEKIYKVRELFKAIGSFETTFTSWIDLVFSTKSSAYNALAYYELFIGLPSKSEQLLLQSIPYKTAYLLASRKGPIEKKIEVMKKINGMPNTSAVFILNQYLPPLREIGSKHVYESDQSVNKAISEKLLDLLHLVCSGTKLSEYNINLMKQLFDNVSSNIFSEKSRELTLSQQSEKSI
SIO_010081: C834KP_RS05275
subclass of: SO_0000673
so part of: C834KP_RS05275
location: 6709..7491
location: region:6709-7491:1
so has part: feature:6709-7491:1:exon

WP_108897167.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6709-7491:1:exon