Rhizobium esperanzae strain N561 plasmid pRspN561b, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.
The limits of bacterial species coexistence and the symbiotic plasmid transference in sympatric Rhizobium populations
Submitted (24-NOV-2015) Programa de Genomica Evolutiva, Centro de Ciencias Genomicas - UNAM, Av. Universidad s/n, Col. Chamilpa, Cuernavaca, Morelos 62210, Mexico
REFSEQ INFORMATION: The reference sequence is identical to\nCP013502.1.\nThe organism was changed from 'Rhizobium etli' to 'Rhizobium\nesperanzae' in October 2018.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Taxonomic-Update-Statistics-START##\nThis Genome (query) :: GCA_001664265.1\nCurrent Name :: Rhizobium esperanzae\nPrevious Name :: Rhizobium etli\nDate Updated :: 2018-10-26\nAnalysis Type :: Average Nucleotide Identity (ANI)\nAnalysis 1 (A1) :: Query vs. TYPE genome for current name\nA1 Genome (subject) :: GCA_002204185.1\nA1 Name :: Rhizobium esperanzae\nA1 ANI :: 96.08231%\nA1 Query Coverage :: 83.82%\nA1 Subject Coverage :: 86.28%\nAnalysis 2 (A2) :: Query vs. TYPE genome for previous name\nA2 Genome (subject) :: GCA_000092045.1\nA2 Name :: Rhizobium etli\nA2 ANI :: 93.16682%\nA2 Query Coverage :: 84.55%\nA2 Subject Coverage :: 83.88%\n##Taxonomic-Update-Statistics-END##\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SPAdes v. 3.5.0; Consed23\nGenome Coverage :: 152x\nSequencing Technology :: Illumina MiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/06/2023 00:11:46\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 6,334\nCDSs (total) :: 6,270\nGenes (coding) :: 6,063\nCDSs (with protein) :: 6,063\nGenes (RNA) :: 64\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 51\nncRNAs :: 4\nPseudo Genes (total) :: 207\nCDSs (without protein) :: 207\nPseudo Genes (ambiguous residues) :: 0 of 207\nPseudo Genes (frameshifted) :: 117 of 207\nPseudo Genes (incomplete) :: 145 of 207\nPseudo Genes (internal stop) :: 27 of 207\nPseudo Genes (multiple problems) :: 66 of 207\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
Olga Perez Carrascal and Victor Gonzalez Z.
COORDINATES: similar to AA sequence:RefSeq:WP_076611562.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF033590.1
GO:0004803 - transposase activity [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_076611472.1
GO:0015074 - DNA integration [Evidence IEA]
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
integrase core domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011053284.1
IS481-like element ISRel2 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_007539569.1
COORDINATES: protein motif:HMM:NF040044.1
COORDINATES: similar to AA sequence:RefSeq:WP_019200234.1
COORDINATES: similar to AA sequence:RefSeq:WP_016737363.1
COORDINATES: similar to AA sequence:RefSeq:WP_012650505.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_018236238.1
COORDINATES: similar to AA sequence:RefSeq:WP_003595231.1
COORDINATES: similar to AA sequence:RefSeq:WP_007576723.1
COORDINATES: protein motif:HMM:NF012515.2
COORDINATES: similar to AA sequence:RefSeq:WP_003497299.1
GO:0005515 - protein binding [Evidence IEA]
GO:0007165 - signal transduction [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010427711.1
COORDINATES: similar to AA sequence:RefSeq:WP_003595224.1
COORDINATES: similar to AA sequence:RefSeq:WP_018236231.1
COORDINATES: similar to AA sequence:RefSeq:WP_014746186.1
COORDINATES: protein motif:HMM:NF025056.2
toll/interleukin-1 receptor domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_003510055.1
COORDINATES: similar to AA sequence:RefSeq:WP_012489406.1
COORDINATES: similar to AA sequence:RefSeq:WP_011664667.1
nucleotidyl transferase AbiEii/AbiGii toxin family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018486493.1
type IV toxin-antitoxin system AbiEi family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_003555376.1
COORDINATES: similar to AA sequence:RefSeq:WP_016555906.1
COORDINATES: similar to AA sequence:RefSeq:WP_016555908.1
COORDINATES: similar to AA sequence:RefSeq:WP_018247142.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_003551129.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF015596.2
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012489415.1
COORDINATES: similar to AA sequence:RefSeq:WP_012760201.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_003590941.1
GSU2403 family nucleotidyltransferase fold protein
COORDINATES: protein motif:HMM:NF012350.2
COORDINATES: protein motif:HMM:NF012905.2
COORDINATES: similar to AA sequence:RefSeq:WP_011651494.1
COORDINATES: similar to AA sequence:RefSeq:WP_011651495.1
pyridoxamine 5'-phosphate oxidase family protein
COORDINATES: protein motif:HMM:NF012791.2
COORDINATES: similar to AA sequence:RefSeq:WP_003547679.1
COORDINATES: similar to AA sequence:RefSeq:WP_011427732.1
GO:0004024 - alcohol dehydrogenase activity, zinc-dependent [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
GO:0006113 - fermentation [Evidence IEA]
zinc-binding alcohol dehydrogenase family protein
COORDINATES: protein motif:HMM:NF012318.2
trypsin-like peptidase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_020397608.1
COORDINATES: protein motif:HMM:NF012301.2
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018246476.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004674362.1
COORDINATES: similar to AA sequence:RefSeq:WP_008534154.1
COORDINATES: similar to AA sequence:RefSeq:WP_004674366.1
COORDINATES: similar to AA sequence:RefSeq:WP_010033181.1
COORDINATES: similar to AA sequence:RefSeq:WP_012330183.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018328800.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
xanthine dehydrogenase family protein molybdopterin-binding subunit
COORDINATES: similar to AA sequence:RefSeq:WP_004674371.1
N-acyl homoserine lactonase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_004674373.1
GO:0046872 - metal ion binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
2Fe-2S iron-sulfur cluster-binding protein
COORDINATES: protein motif:HMM:NF015415.2
COORDINATES: protein motif:HMM:NF013134.2
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_076611299.1
internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004674376.1
GO:0009374 - biotin binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009465831.1
IS66 family insertion sequence element accessory protein TnpB
COORDINATES: similar to AA sequence:RefSeq:WP_008534161.1
COORDINATES: similar to AA sequence:RefSeq:WP_010875348.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS66 family transposase zinc-finger binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_003532611.1
COORDINATES: similar to AA sequence:RefSeq:WP_011971066.1
GO:0005507 - copper ion binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
multicopper oxidase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004129756.1
COORDINATES: similar to AA sequence:RefSeq:WP_008534165.1
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_012489432.1
COORDINATES: similar to AA sequence:RefSeq:WP_018328855.1
COORDINATES: similar to AA sequence:RefSeq:WP_010969728.1
COORDINATES: similar to AA sequence:RefSeq:WP_012489435.1
GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
glycoside hydrolase family 3 C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_016737402.1
COORDINATES: similar to AA sequence:RefSeq:WP_016737403.1
saccharopine dehydrogenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012275063.1
COORDINATES: protein motif:HMM:NF012798.2
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003584387.1
COORDINATES: similar to AA sequence:RefSeq:WP_006482547.1
COORDINATES: similar to AA sequence:RefSeq:WP_013851011.1
COORDINATES: similar to AA sequence:RefSeq:WP_013851015.1
GO:0008837 - diaminopimelate epimerase activity [Evidence IEA]
GO:0009089 - lysine biosynthetic process via diaminopimelate [Evidence IEA]
COORDINATES: protein motif:HMM:NF013677.2
COORDINATES: similar to AA sequence:RefSeq:WP_011749831.1
TnpB, as the term is used for proteins encoded by IS66 family insertion elements, is considered an accessory protein, since TnpC, encoded by a neighboring gene, is a DDE family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_046205714.1
COORDINATES: similar to AA sequence:RefSeq:WP_012489441.1
COORDINATES: protein motif:HMM:NF025569.2
COORDINATES: similar to AA sequence:RefSeq:WP_012489442.1
COORDINATES: similar to AA sequence:RefSeq:WP_018859771.1
COORDINATES: similar to AA sequence:RefSeq:WP_003567125.1
COORDINATES: similar to AA sequence:RefSeq:WP_007637101.1
GO:0004673 - protein histidine kinase activity [Evidence IEA]
HWE histidine kinase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012760313.1
COORDINATES: similar to AA sequence:RefSeq:WP_027033250.1
COORDINATES: similar to AA sequence:RefSeq:WP_008534187.1
COORDINATES: similar to AA sequence:RefSeq:WP_012489448.1
COORDINATES: similar to AA sequence:RefSeq:WP_014531964.1
COORDINATES: similar to AA sequence:RefSeq:WP_015241895.1
COORDINATES: similar to AA sequence:RefSeq:WP_004672578.1
COORDINATES: similar to AA sequence:RefSeq:WP_011053319.1
COORDINATES: similar to AA sequence:RefSeq:WP_008534228.1
COORDINATES: similar to AA sequence:RefSeq:WP_004672582.1
COORDINATES: similar to AA sequence:RefSeq:WP_004672583.1
COORDINATES: similar to AA sequence:RefSeq:WP_018247139.1
GO:0030254 - protein secretion by the type III secretion system [Evidence IEA]
type III secretion inner membrane ring lipoprotein SctJ
COORDINATES: similar to AA sequence:RefSeq:WP_011053322.1
COORDINATES: similar to AA sequence:RefSeq:WP_007636029.1
GO:0030257 - type III protein secretion system complex [Evidence IEA]
type III secretion system stator protein SctL
COORDINATES: similar to AA sequence:RefSeq:WP_004672587.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
GO:0046034 - ATP metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012489459.1
type III secretion system cytoplasmic ring protein SctQ
COORDINATES: similar to AA sequence:RefSeq:WP_007636018.1
type III secretion system export apparatus subunit SctR
COORDINATES: similar to AA sequence:RefSeq:WP_015241680.1
GO:0009306 - protein secretion [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008534267.1
GO:0006605 - protein targeting [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011053325.1
EscU/YscU/HrcU family type III secretion system export apparatus switch protein
COORDINATES: similar to AA sequence:RefSeq:WP_012489463.1
GO:0005576 - extracellular region [Evidence IEA]
GO:0030570 - pectate lyase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008534277.1
COORDINATES: similar to AA sequence:RefSeq:WP_018247141.1
COORDINATES: similar to AA sequence:RefSeq:WP_004672595.1
COORDINATES: similar to AA sequence:RefSeq:WP_008534289.1
COORDINATES: similar to AA sequence:RefSeq:WP_004672597.1
COORDINATES: similar to AA sequence:RefSeq:WP_008534295.1
COORDINATES: similar to AA sequence:RefSeq:WP_019566648.1
COORDINATES: similar to AA sequence:RefSeq:WP_010031884.1
COORDINATES: similar to AA sequence:RefSeq:WP_004675991.1
COORDINATES: similar to AA sequence:RefSeq:WP_004675992.1
tellurite-like stress resistance cysteine protease StiP
COORDINATES: similar to AA sequence:RefSeq:WP_011053330.1
phosphoribosyltransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013419362.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611444.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS3-like element ISRel21 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_004668600.1
COORDINATES: similar to AA sequence:RefSeq:WP_011053334.1
COORDINATES: similar to AA sequence:RefSeq:WP_004668604.1
COORDINATES: similar to AA sequence:RefSeq:WP_012976703.1
COORDINATES: protein motif:HMM:NF022783.2
COORDINATES: similar to AA sequence:RefSeq:WP_018855502.1
type II toxin-antitoxin system HipA family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_008534330.1
COORDINATES: similar to AA sequence:RefSeq:WP_004668612.1
COORDINATES: similar to AA sequence:RefSeq:WP_011053340.1
COORDINATES: similar to AA sequence:RefSeq:WP_004668619.1
GO:0051920 - peroxiredoxin activity [Evidence IEA]
carboxymuconolactone decarboxylase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_004668622.1
COORDINATES: similar to AA sequence:RefSeq:WP_004668623.1
COORDINATES: similar to AA sequence:RefSeq:WP_004668626.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_004668627.1
sugar ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_008534336.1
COORDINATES: similar to AA sequence:RefSeq:WP_004668632.1
COORDINATES: similar to AA sequence:RefSeq:WP_004668634.1
NAD-dependent succinate-semialdehyde dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_004668636.1
COORDINATES: protein motif:HMM:NF012307.2
COORDINATES: similar to AA sequence:RefSeq:WP_014528241.1
COORDINATES: similar to AA sequence:RefSeq:WP_012489469.1
COORDINATES: similar to AA sequence:RefSeq:WP_004673279.1
COORDINATES: similar to AA sequence:RefSeq:WP_008534360.1
COORDINATES: similar to AA sequence:RefSeq:WP_016737426.1
COORDINATES: similar to AA sequence:RefSeq:WP_011053352.1
HAMP domain-containing methyl-accepting chemotaxis protein
COORDINATES: similar to AA sequence:RefSeq:WP_008534366.1
COORDINATES: similar to AA sequence:RefSeq:WP_016737428.1
COORDINATES: similar to AA sequence:RefSeq:WP_008534368.1
COORDINATES: similar to AA sequence:RefSeq:WP_004673287.1
zinc-dependent alcohol dehydrogenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_004673289.1
COORDINATES: similar to AA sequence:RefSeq:WP_016737430.1
COORDINATES: similar to AA sequence:RefSeq:WP_008534369.1
COORDINATES: similar to AA sequence:RefSeq:WP_086558307.1
COORDINATES: similar to AA sequence:RefSeq:WP_004671535.1
COORDINATES: similar to AA sequence:RefSeq:WP_004671533.1
COORDINATES: similar to AA sequence:RefSeq:WP_004671531.1
COORDINATES: similar to AA sequence:RefSeq:WP_018328913.1
LLM class flavin-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_016737432.1
COORDINATES: similar to AA sequence:RefSeq:WP_004671526.1
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009987854.1
COORDINATES: similar to AA sequence:RefSeq:WP_012489472.1
COORDINATES: similar to AA sequence:RefSeq:WP_004671523.1
GO:0008686 - 3,4-dihydroxy-2-butanone-4-phosphate synthase activity [Evidence IEA]; GO:0003935 - GTP cyclohydrolase II activity [Evidence IEA]
bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II
COORDINATES: similar to AA sequence:RefSeq:WP_012489473.1
COORDINATES: similar to AA sequence:RefSeq:WP_012489474.1
GO:0004619 - phosphoglycerate mutase activity [Evidence IEA]
GO:0006096 - glycolytic process [Evidence IEA]
2,3-bisphosphoglycerate-dependent phosphoglycerate mutase
COORDINATES: similar to AA sequence:RefSeq:WP_018328889.1
substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_016737438.1
COORDINATES: similar to AA sequence:RefSeq:WP_004671512.1
COORDINATES: similar to AA sequence:RefSeq:WP_018247153.1
COORDINATES: similar to AA sequence:RefSeq:WP_004671507.1
COORDINATES: similar to AA sequence:RefSeq:WP_004671505.1
COORDINATES: similar to AA sequence:RefSeq:WP_004671504.1
COORDINATES: similar to AA sequence:RefSeq:WP_008534397.1
COORDINATES: similar to AA sequence:RefSeq:WP_008534399.1
COORDINATES: similar to AA sequence:RefSeq:WP_012489479.1
bifunctional diguanylate cyclase/phosphodiesterase
COORDINATES: similar to AA sequence:RefSeq:WP_018493252.1
60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012760297.1
zincin-like metallopeptidase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_016737443.1
COORDINATES: similar to AA sequence:RefSeq:WP_004673403.1
COORDINATES: similar to AA sequence:RefSeq:WP_018446357.1
COORDINATES: similar to AA sequence:RefSeq:WP_016737445.1
lytic transglycosylase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007823589.1
COORDINATES: similar to AA sequence:RefSeq:WP_007636187.1
COORDINATES: similar to AA sequence:RefSeq:WP_007636185.1
VirB4 family type IV secretion system protein
COORDINATES: similar to AA sequence:RefSeq:WP_012489487.1
GO:0043684 - type IV secretion system complex [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004673415.1
COORDINATES: similar to AA sequence:RefSeq:WP_011053372.1
GO:0030255 - protein secretion by the type IV secretion system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004673420.1
COORDINATES: similar to AA sequence:RefSeq:WP_012489489.1
COORDINATES: similar to AA sequence:RefSeq:WP_009996879.1
P-type conjugative transfer protein VirB9
COORDINATES: similar to AA sequence:RefSeq:WP_016737452.1
COORDINATES: similar to AA sequence:RefSeq:WP_007636165.1
GO:0044097 - secretion by the type IV secretion system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016737454.1
COORDINATES: similar to AA sequence:RefSeq:WP_007636161.1
COORDINATES: similar to AA sequence:RefSeq:WP_016737456.1
COORDINATES: similar to AA sequence:RefSeq:WP_003571619.1
COORDINATES: similar to AA sequence:RefSeq:WP_013845385.1
COORDINATES: similar to AA sequence:RefSeq:WP_007823649.1
type II toxin-antitoxin system VapC family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_003535142.1
COORDINATES: similar to AA sequence:RefSeq:WP_004676096.1
COORDINATES: protein motif:HMM:NF017243.2
COORDINATES: similar to AA sequence:RefSeq:WP_010066437.1
COORDINATES: similar to AA sequence:RefSeq:WP_011053387.1
type II toxin-antitoxin system prevent-host-death family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_012489500.1
Ti-type conjugative transfer system protein TraG
COORDINATES: similar to AA sequence:RefSeq:WP_004676101.1
COORDINATES: similar to AA sequence:RefSeq:WP_007636139.1
COORDINATES: similar to AA sequence:RefSeq:WP_011053391.1
Ti-type conjugative transfer relaxase TraA
COORDINATES: similar to AA sequence:RefSeq:WP_012489503.1
COORDINATES: similar to AA sequence:RefSeq:WP_016737465.1
COORDINATES: similar to AA sequence:RefSeq:WP_007636126.1
COORDINATES: similar to AA sequence:RefSeq:WP_016737466.1
COORDINATES: similar to AA sequence:RefSeq:WP_012489507.1
COORDINATES: similar to AA sequence:RefSeq:WP_018247165.1
COORDINATES: similar to AA sequence:RefSeq:WP_007636118.1
COORDINATES: similar to AA sequence:RefSeq:WP_007636116.1
transporter substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008536029.1
COORDINATES: similar to AA sequence:RefSeq:WP_016737469.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA]
GO:0015837 - amine transport [Evidence IEA]
The N-terminal region of this protein, as described by TIGR01726, is a three transmembrane segment that identifies a subfamily of ABC transporter permease subunits, which specificities that include histidine, arginine, glutamine, glutamate, L-cystine (sic), the opines (in Agrobacterium) octopine and nopaline, etc.; The N-terminal region of this protein, as described by TIGR01726, is a three transmembrane segment that identifies a subfamily of ABC transporter permease subunits, which specificities that include histidine, arginine, glutamine, glutamate, L-cystine (sic), the opines (in Agrobacterium) octopine and nopaline, etc; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007636110.1
COORDINATES: similar to AA sequence:RefSeq:WP_011970797.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611363.1
COORDINATES: similar to AA sequence:RefSeq:WP_010068053.1
COORDINATES: similar to AA sequence:RefSeq:WP_008536033.1
COORDINATES: protein motif:HMM:NF036442.2
COORDINATES: similar to AA sequence:RefSeq:WP_012489515.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011654537.1
COORDINATES: similar to AA sequence:RefSeq:WP_010024976.1
COORDINATES: similar to AA sequence:RefSeq:WP_004680434.1
COORDINATES: similar to AA sequence:RefSeq:WP_018899396.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004680432.1
COORDINATES: similar to AA sequence:RefSeq:WP_016737474.1
COORDINATES: similar to AA sequence:RefSeq:WP_004680430.1
GO:0003674 - molecular_function [Evidence IEA]
GO:0033103 - protein secretion by the type VI secretion system [Evidence IEA]
type VI secretion system tip protein TssI/VgrG
COORDINATES: similar to AA sequence:RefSeq:WP_004680429.1
type VI secretion system baseplate subunit TssG
COORDINATES: similar to AA sequence:RefSeq:WP_004680428.1
type VI secretion system baseplate subunit TssF
COORDINATES: similar to AA sequence:RefSeq:WP_004680427.1
type VI secretion system baseplate subunit TssE
COORDINATES: similar to AA sequence:RefSeq:WP_007636660.1
type VI secretion system tube protein Hcp
COORDINATES: similar to AA sequence:RefSeq:WP_004680425.1
GO:0033104 - type VI protein secretion system complex [Evidence IEA]
type VI secretion system contractile sheath large subunit
COORDINATES: similar to AA sequence:RefSeq:WP_016737476.1
type VI secretion system contractile sheath small subunit
COORDINATES: similar to AA sequence:RefSeq:WP_004680423.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611552.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012489520.1
COORDINATES: similar to AA sequence:RefSeq:WP_012477253.1
COORDINATES: similar to AA sequence:RefSeq:WP_010069402.1
type VI secretion system baseplate subunit TssK
COORDINATES: similar to AA sequence:RefSeq:WP_012489523.1
COORDINATES: similar to AA sequence:RefSeq:WP_012489524.1
type IVB secretion system protein IcmH/DotU
COORDINATES: similar to AA sequence:RefSeq:WP_012489525.1
type VI secretion system membrane subunit TssM
COORDINATES: similar to AA sequence:RefSeq:WP_012489526.1
COORDINATES: similar to AA sequence:RefSeq:WP_008536071.1
COORDINATES: similar to AA sequence:RefSeq:WP_010875360.1
GO:0003824 - catalytic activity [Evidence IEA]
GO:0009058 - biosynthetic process [Evidence IEA]
carbamoyltransferase N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018247171.1
LysR substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011053432.1
GO:0003824 - catalytic activity [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013897121.1
nuclear transport factor 2 family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014531025.1
GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008536079.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611470.1
COORDINATES: similar to AA sequence:RefSeq:WP_012489534.1
GO:0008234 - cysteine-type peptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011053406.1
IS110-like element ISRel9 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_011427422.1
ISNCY-like element ISRel26 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_004674717.1
COORDINATES: similar to AA sequence:RefSeq:WP_012489539.1
COORDINATES: protein motif:HMM:NF017528.2
IS66-like element ISRle3 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_008536567.1
GO:0008324 - monoatomic cation transmembrane transporter activity [Evidence IEA]
GO:0006812 - monoatomic cation transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF024406.2
COORDINATES: similar to AA sequence:RefSeq:WP_009991126.1
NifX-associated nitrogen fixation protein
COORDINATES: similar to AA sequence:RefSeq:WP_016737533.1
GO:0051540 - metal cluster binding [Evidence IEA]
GO:0009399 - nitrogen fixation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004672660.1
nitrogenase iron-molybdenum cofactor biosynthesis protein NifN
COORDINATES: similar to AA sequence:RefSeq:WP_011053415.1
nitrogenase iron-molybdenum cofactor biosynthesis protein NifE
COORDINATES: similar to AA sequence:RefSeq:WP_006331758.1
GO:0016612 - molybdenum-iron nitrogenase complex [Evidence IEA]
GO:0016163 - nitrogenase activity [Evidence IEA]
nitrogenase molybdenum-iron protein subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_003532774.1
nitrogenase molybdenum-iron protein alpha chain
COORDINATES: similar to AA sequence:RefSeq:WP_004675840.1
GO:0016611 - iron-iron nitrogenase complex [Evidence IEA]; GO:0016612 - molybdenum-iron nitrogenase complex [Evidence IEA]; GO:0016613 - vanadium-iron nitrogenase complex [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007636855.1
COORDINATES: protein motif:HMM:NF018595.2
COORDINATES: similar to AA sequence:RefSeq:WP_008536557.1
COORDINATES: similar to AA sequence:RefSeq:WP_010009905.1
Crp/Fnr family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_017964666.1
internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007629624.1
responsible for the amidation of carboxylic groups at position A and C of cobyrinic acid or hydrogenobrynic acid; frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004678566.1
COORDINATES: similar to AA sequence:RefSeq:WP_004678547.1
GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004678546.1
GO:0005198 - structural molecule activity [Evidence IEA]
GO:0016226 - iron-sulfur cluster assembly [Evidence IEA]
iron-sulfur cluster assembly accessory protein
COORDINATES: similar to AA sequence:RefSeq:WP_007636873.1
GO:0031071 - cysteine desulfurase activity [Evidence IEA]
GO:0006520 - amino acid metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008536550.1
nitrogenase stabilizing/protective protein NifW
COORDINATES: similar to AA sequence:RefSeq:WP_004678528.1
electron transfer flavoprotein subunit beta/FixA family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008536549.1
electron transfer flavoprotein subunit alpha/FixB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008536548.1
COORDINATES: similar to AA sequence:RefSeq:WP_011970923.1
COORDINATES: similar to AA sequence:RefSeq:WP_018247198.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0009399 - nitrogen fixation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
nif-specific transcriptional activator NifA
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
nitrogenase cofactor biosynthesis protein NifB
COORDINATES: similar to AA sequence:RefSeq:WP_008536545.1
COORDINATES: similar to AA sequence:RefSeq:WP_008536544.1
COORDINATES: similar to AA sequence:RefSeq:WP_007636888.1
COORDINATES: similar to AA sequence:RefSeq:WP_004678511.1
COORDINATES: similar to AA sequence:RefSeq:WP_004671991.1
GO:0004400 - histidinol-phosphate transaminase activity [Evidence IEA]
GO:0000105 - histidine biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF013730.2
COORDINATES: similar to AA sequence:RefSeq:WP_004125955.1
COORDINATES: similar to AA sequence:RefSeq:WP_004671987.1
COORDINATES: similar to AA sequence:RefSeq:WP_007635327.1
COORDINATES: similar to AA sequence:RefSeq:WP_018247203.1
COORDINATES: similar to AA sequence:RefSeq:WP_007636760.1
COORDINATES: similar to AA sequence:RefSeq:WP_009803580.1
COORDINATES: similar to AA sequence:RefSeq:WP_011053436.1
COORDINATES: protein motif:HMM:NF012464.2
COORDINATES: similar to AA sequence:RefSeq:WP_020819796.1
COORDINATES: similar to AA sequence:RefSeq:WP_012976042.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611357.1
COORDINATES: protein motif:HMM:NF024172.2
COORDINATES: similar to AA sequence:RefSeq:WP_011084489.1
COORDINATES: similar to AA sequence:RefSeq:WP_007636915.1
COORDINATES: similar to AA sequence:RefSeq:WP_018247206.1
GO:0004452 - isopentenyl-diphosphate delta-isomerase activity [Evidence IEA]
GO:0008299 - isoprenoid biosynthetic process [Evidence IEA]
type 2 isopentenyl-diphosphate Delta-isomerase
COORDINATES: similar to AA sequence:RefSeq:WP_011084944.1
COORDINATES: similar to AA sequence:RefSeq:WP_016737498.1
COORDINATES: similar to AA sequence:RefSeq:WP_008838317.1
COORDINATES: similar to AA sequence:RefSeq:WP_011053443.1
COORDINATES: similar to AA sequence:RefSeq:WP_014497730.1
GO:0020037 - heme binding [Evidence IEA]; GO:0005506 - iron ion binding [Evidence IEA]; GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012489562.1
COORDINATES: similar to AA sequence:RefSeq:WP_014501321.1
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011053448.1
COORDINATES: similar to AA sequence:RefSeq:WP_010009888.1
GO:0030151 - molybdenum ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018247185.1
COORDINATES: similar to AA sequence:RefSeq:WP_011053449.1
COORDINATES: similar to AA sequence:RefSeq:WP_086558212.1
COORDINATES: similar to AA sequence:RefSeq:WP_018247211.1
COORDINATES: similar to AA sequence:RefSeq:WP_004679185.1
COORDINATES: similar to AA sequence:RefSeq:WP_011053454.1
carbamoyltransferase C-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF016908.2
GO:0016740 - transferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_076611960.1
COORDINATES: similar to AA sequence:RefSeq:WP_004672573.1
COORDINATES: similar to AA sequence:RefSeq:WP_018247213.1
COORDINATES: similar to AA sequence:RefSeq:WP_018247214.1
COORDINATES: similar to AA sequence:RefSeq:WP_008536490.1
COORDINATES: similar to AA sequence:RefSeq:WP_008536489.1
COORDINATES: similar to AA sequence:RefSeq:WP_016737487.1
nodulation factor ABC transporter ATP-binding protein NodI
COORDINATES: similar to AA sequence:RefSeq:WP_012489576.1
GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity [Evidence IEA]
GO:0009877 - nodulation [Evidence IEA]; GO:0009312 - oligosaccharide biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007636999.1
GO:0016757 - glycosyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004679213.1
GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_076612145.1
COORDINATES: similar to AA sequence:RefSeq:WP_010025697.1
GO:0016758 - hexosyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008536477.1
COORDINATES: similar to AA sequence:RefSeq:WP_004674430.1
COORDINATES: similar to AA sequence:RefSeq:WP_004674428.1
COORDINATES: similar to AA sequence:RefSeq:WP_003549679.1
GO:0008535 - respiratory chain complex IV assembly [Evidence IEA]
cbb3-type cytochrome oxidase assembly protein CcoS
COORDINATES: similar to AA sequence:RefSeq:WP_004674422.1
COORDINATES: similar to AA sequence:RefSeq:WP_011053472.1
COORDINATES: similar to AA sequence:RefSeq:WP_011654242.1
cytochrome c oxidase accessory protein CcoG
COORDINATES: similar to AA sequence:RefSeq:WP_003590892.1
COORDINATES: similar to AA sequence:RefSeq:WP_020048100.1
GO:0004129 - cytochrome-c oxidase activity [Evidence IEA]
cytochrome-c oxidase, cbb3-type subunit III
COORDINATES: similar to AA sequence:RefSeq:WP_007795252.1
cbb3-type cytochrome c oxidase subunit 3
COORDINATES: similar to AA sequence:RefSeq:WP_016737483.1
cytochrome-c oxidase, cbb3-type subunit II
COORDINATES: similar to AA sequence:RefSeq:WP_003549660.1
cytochrome-c oxidase, cbb3-type subunit I
COORDINATES: similar to AA sequence:RefSeq:WP_003581460.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016737107.1
GO:0005507 - copper ion binding [Evidence IEA]; GO:0009055 - electron transfer activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011053474.1
GO:0051989 - coproporphyrinogen dehydrogenase activity [Evidence IEA]
GO:0006779 - porphyrin-containing compound biosynthetic process [Evidence IEA]
oxygen-independent coproporphyrinogen III oxidase
COORDINATES: protein motif:HMM:NF017072.2
COORDINATES: similar to AA sequence:RefSeq:WP_004677870.1
COORDINATES: similar to AA sequence:RefSeq:WP_009991124.1
COORDINATES: similar to AA sequence:RefSeq:WP_007539040.1
COORDINATES: similar to AA sequence:RefSeq:WP_012556676.1
COORDINATES: similar to AA sequence:RefSeq:WP_004679687.1
COORDINATES: similar to AA sequence:RefSeq:WP_010034735.1
COORDINATES: similar to AA sequence:RefSeq:WP_004677776.1
COORDINATES: similar to AA sequence:RefSeq:WP_016737344.1
phytanoyl-CoA dioxygenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_004677772.1
COORDINATES: similar to AA sequence:RefSeq:WP_011053481.1
GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
GO:0006418 - tRNA aminoacylation for protein translation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004677768.1
COORDINATES: similar to AA sequence:RefSeq:WP_011053482.1
COORDINATES: similar to AA sequence:RefSeq:WP_004677763.1
COORDINATES: similar to AA sequence:RefSeq:WP_011053483.1
COORDINATES: similar to AA sequence:RefSeq:WP_004677747.1
COORDINATES: similar to AA sequence:RefSeq:WP_004677746.1
COORDINATES: similar to AA sequence:RefSeq:WP_012489593.1
COORDINATES: protein motif:HMM:NF013676.2
COORDINATES: similar to AA sequence:RefSeq:WP_008533948.1
HlyD family efflux transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_004676279.1
peptidase domain-containing ABC transporter
COORDINATES: similar to AA sequence:RefSeq:WP_007635973.1
COORDINATES: similar to AA sequence:RefSeq:WP_007636849.1
nitrogenase iron protein; nitrogenase component 2; with component 1, an molybdenum-iron protein, catalyzes the fixation of nitrogen to ammonia; nitrogen reductase provides electrons to the nitrogenase complex; in R. etli there are three essentially identical copies of nifH which are actively expressed during symbiosis; frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF013884.2
GO:0016747 - acyltransferase activity, transferring groups other than amino-acyl groups [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006206776.1
GO:0015267 - channel activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004672710.1
GO:0003999 - adenine phosphoribosyltransferase activity [Evidence IEA]
GO:0009116 - nucleoside metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004672712.1
COORDINATES: similar to AA sequence:RefSeq:WP_004672713.1
COORDINATES: similar to AA sequence:RefSeq:WP_004672714.1
COORDINATES: similar to AA sequence:RefSeq:WP_004672715.1
COORDINATES: similar to AA sequence:RefSeq:WP_011053499.1
GO:0004749 - ribose phosphate diphosphokinase activity [Evidence IEA]
GO:0009152 - purine ribonucleotide biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF019845.2
medium chain dehydrogenase/reductase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007539592.1
COORDINATES: similar to AA sequence:RefSeq:WP_007538730.1
COORDINATES: similar to AA sequence:RefSeq:WP_004672729.1
COORDINATES: similar to AA sequence:RefSeq:WP_004672730.1