Candidatus Borreliella tachyglossi strain Bc-F10-1268 plasmid pc6.
type: Entry
definition: Candidatus Borreliella tachyglossi strain Bc-F10-1268 plasmid pc6.
sequence version: NZ_CP025790.1
sequence date: 2022-09-14
sequence: sequence
division: CON
label: NZ_CP025790.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN07807165
keyword: RefSeq
source: Candidatus Borreliella tachyglossi (Candidatus Borrelia tachyglossi)
organism: Candidatus Borreliella tachyglossi
taxonomy: Bacteria; Spirochaetota; Spirochaetia; Spirochaetales; Borreliaceae; Borreliella.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP025790.1.\nBacteria and source DNA available from Vector and Water-Borne\nPathogen Research Lab, Murdoch University, Perth, Australia.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 09-JAN-2018\nAssembly Method :: SPAdes v. 3.11\nAssembly Name :: Bt-1268-Bc-F10_MetSPA\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 1320.8x\nSequencing Technology :: Illumina NextSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 09/13/2022 23:29:11\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.2\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 1,077\nCDSs (total) :: 1,039\nGenes (coding) :: 1,024\nCDSs (with protein) :: 1,024\nGenes (RNA) :: 38\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 32\nncRNAs :: 3\nPseudo Genes (total) :: 15\nCDSs (without protein) :: 15\nPseudo Genes (ambiguous residues) :: 0 of 15\nPseudo Genes (frameshifted) :: 10 of 15\nPseudo Genes (incomplete) :: 5 of 15\nPseudo Genes (internal stop) :: 3 of 15\nPseudo Genes (multiple problems) :: 3 of 15\n##Genome-Annotation-Data-END##

sequence
subclass of: SO_0000155
sequence length: 6461
topology: circular
so has quality: SO_0000988
location: 1..6461
location: region:1-6461:1
RO_0002162: 1964448

NZ_CP025790
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN07807165
type: BioSample
SIO_000068: biosample

1
title: Genome sequence of Borrelia tachyglossi
author: Gofton, A.W.
journal: Unpublished

2
title: Direct Submission
author: Gofton, A.W.
journal: Submitted (09-JAN-2018) School of Veterinary and Life Sciences, Murdoch Univeristy, 90 South St, Perth, WA 6163, Australia

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6461:1
position: 6461
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-6461:1:source
so part of: sequence
organism: Candidatus Borreliella tachyglossi
mol type: genomic DNA
strain: Bc-F10-1268
isolation source: tick removed while feeding from Echidna (Tachyglossi aculeatus)
host: Bothriocroton concolor
plasmid: pc6
country: Australia: Queensland, Beerwah
collection date: 2014-08-01

1964448
type: Taxonomy
SIO_000068: taxonomy

CR532_RS05340
type: Gene
subclass of: SO_0000704
RO_0002162: 1964448
locus tag: CR532_RS05340
old locus tag: CR532_05325
so part of: sequence
location: 503..1135
location: region:503-1135:1
so has part: feature:503-1135:1:exon
subclass of: SO_0000010

position:503:1
position: 503
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1135:1
position: 1135
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:503-1135:1:exon

CR532_RS05340
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1964448
locus tag: CR532_RS05340
old locus tag: CR532_05325
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014683069.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRDIKQDSIRKRKLPMLLNYDNYVVEGKRETFFGNSQYEANYKAKVNGFIIDFFKIPKSLKDKYEVNIKSLSSPDLPLGNIAMNCINTFKLIVDIINMQTGKVYDYDKFITETESNKMLQYGAKVVSALSRHFDESRGTNYNEGYYEWEKGWIDKKWIDYEPSKLEIQEMQKLNRKLNPEVISRGVHKKVSKMQMGQIKLLRAIEKLEGA
SIO_010081: CR532_RS05340
subclass of: SO_0000673
so part of: CR532_RS05340
location: 503..1135
location: region:503-1135:1
so has part: feature:503-1135:1:exon

WP_108729788.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:503-1135:1:exon

CR532_RS05345
type: Gene
subclass of: SO_0000704
RO_0002162: 1964448
locus tag: CR532_RS05345
old locus tag: CR532_05330
so part of: sequence
location: 2913..3098
location: region:2913-3098:1
so has part: feature:2913-3098:1:exon
subclass of: SO_0000010

position:2913:1
position: 2913
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3098:1
position: 3098
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2913-3098:1:exon

CR532_RS05345
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1964448
locus tag: CR532_RS05345
old locus tag: CR532_05330
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSGLALVKGKITINILKIKALSGSGIFVYKDGISYDLAFDIQDNSAFLAFLDLETLLEDFI
SIO_010081: CR532_RS05345
subclass of: SO_0000673
so part of: CR532_RS05345
location: 2913..3098
location: region:2913-3098:1
so has part: feature:2913-3098:1:exon

WP_108729789.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2913-3098:1:exon

CR532_RS05355
type: Gene
subclass of: SO_0000704
RO_0002162: 1964448
locus tag: CR532_RS05355
old locus tag: CR532_05335
so part of: sequence
location: complement(3795..4370)
location: region:3795-4370:-1
so has part: feature:3795-4370:-1:exon
subclass of: SO_0000010

position:3795:-1
position: 3795
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4370:-1
position: 4370
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3795-4370:-1:exon

CR532_RS05355
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1964448
locus tag: CR532_RS05355
old locus tag: CR532_05335
inference: COORDINATES: protein motif:HMM:NF014468.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid maintenance protein
translation: MKNLNFFLYNNSKLKKNQVRLIKLISILKYLNKSKLGYNQQDILNLANFFLKKEGYSVIKLKTLQKDLNFLKINSIIKTFIIRLGEYKGSKIKYIPNKDAYQRLKKVLNATEELLEKTFNIIYRINKKEKSQKKTKEKNRTKNSSVYNINNNINNNKLTEISLIPYKKTFKAKTNSWESQLTRKQIQIYTT
SIO_010081: CR532_RS05355
subclass of: SO_0000673
so part of: CR532_RS05355
location: complement(3795..4370)
location: region:3795-4370:-1
so has part: feature:3795-4370:-1:exon

WP_108729791.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3795-4370:-1:exon

CR532_RS05360
type: Gene
subclass of: SO_0000704
RO_0002162: 1964448
locus tag: CR532_RS05360
old locus tag: CR532_05340
so part of: sequence
location: 4580..4816
location: region:4580-4816:1
so has part: feature:4580-4816:1:exon
subclass of: SO_0000010

position:4580:1
position: 4580
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4816:1
position: 4816
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4580-4816:1:exon

CR532_RS05360
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1964448
locus tag: CR532_RS05360
old locus tag: CR532_05340
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014683070.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKVTLDFLNSLKNLKEFSKEMGYSDSSYLSRYIKKNKIKGIIYSKDLFFRKRELLLSEKTQNFIKNKLKKELQSKRGN
SIO_010081: CR532_RS05360
subclass of: SO_0000673
so part of: CR532_RS05360
location: 4580..4816
location: region:4580-4816:1
so has part: feature:4580-4816:1:exon

WP_108729792.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4580-4816:1:exon

CR532_RS05365
type: Gene
subclass of: SO_0000704
RO_0002162: 1964448
locus tag: CR532_RS05365
old locus tag: CR532_05345
so part of: sequence
location: 4822..5082
location: region:4822-5082:1
so has part: feature:4822-5082:1:exon
subclass of: SO_0000010

position:4822:1
position: 4822
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5082:1
position: 5082
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4822-5082:1:exon

CR532_RS05365
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1964448
locus tag: CR532_RS05365
old locus tag: CR532_05345
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014683071.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MERVNLQIFFIECGGKKYYTPLFLAKVNNVSYFTIKNKIKKLNISVKAKDIGIINSLSEELLIPEDNLDKLFYDKRFRGLDSRGIR
SIO_010081: CR532_RS05365
subclass of: SO_0000673
so part of: CR532_RS05365
location: 4822..5082
location: region:4822-5082:1
so has part: feature:4822-5082:1:exon

WP_108729793.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4822-5082:1:exon

CR532_RS05370
type: Gene
subclass of: SO_0000704
RO_0002162: 1964448
locus tag: CR532_RS05370
old locus tag: CR532_05350
so part of: sequence
location: 5079..5837
location: region:5079-5837:1
so has part: feature:5079-5837:1:exon
subclass of: SO_0000010

position:5079:1
position: 5079
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5837:1
position: 5837
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5079-5837:1:exon

CR532_RS05370
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1964448
locus tag: CR532_RS05370
old locus tag: CR532_05350
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012539780.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family protein
translation: MRDVISISSIKGGVGKSVTAIILGYIFSKRHKTLLIDIDSQASITSYFLPYFENKIDIREYNIYEVLKSKKSFMSIVHEITDNLHFAPSHIRLSQFSGENIIGQEYKLKTILTPYFDVYDYILIDTPPSVNKELINSLMIATKVVIPLPAELWAIESYDILKSKMQEIITAYQKQDFKSYYVIQTLYEENRKIKKKFFYSLQQLYEEYVPIKIHRSVAIQKMITYRLEPQDSERYYKEYLKVAEVIEGIWTA
SIO_010081: CR532_RS05370
subclass of: SO_0000673
so part of: CR532_RS05370
location: 5079..5837
location: region:5079-5837:1
so has part: feature:5079-5837:1:exon

WP_108729794.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5079-5837:1:exon

CR532_RS05375
type: Gene
subclass of: SO_0000704
RO_0002162: 1964448
locus tag: CR532_RS05375
old locus tag: CR532_05355
so part of: sequence
location: 5883..6404
location: region:5883-6404:1
so has part: feature:5883-6404:1:exon
subclass of: SO_0000010

position:5883:1
position: 5883
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6404:1
position: 6404
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5883-6404:1:exon

CR532_RS05375
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1964448
locus tag: CR532_RS05375
old locus tag: CR532_05355
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012539779.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: chromosome replication/partitioning protein
translation: MKIDILDTIKSRIGDLTQVGDISDREKKRLRYRKLKEEIKARTLEEAINKIELAKVLYEIKKNKFYKFDGYHSFYEFCLDYKLSRTMIYKYIKIGTYLEKENISEQDIMRSSLNKIMNDIRVRKNSSEEHKPVIIKFNLESKDKQLVLVKNKQKLEKFLLRCLLDHWESFINS
SIO_010081: CR532_RS05375
subclass of: SO_0000673
so part of: CR532_RS05375
location: 5883..6404
location: region:5883-6404:1
so has part: feature:5883-6404:1:exon

WP_108729795.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5883-6404:1:exon