Candidatus Borreliella tachyglossi strain Bc-F10-1268 plasmid pl20.
Candidatus Borreliella tachyglossi (Candidatus Borrelia tachyglossi)
Bacteria; Spirochaetota; Spirochaetia; Spirochaetales; Borreliaceae; Borreliella.
Submitted (09-JAN-2018) School of Veterinary and Life Sciences, Murdoch Univeristy, 90 South St, Perth, WA 6163, Australia
REFSEQ INFORMATION: The reference sequence is identical to\nCP025789.1.\nBacteria and source DNA available from Vector and Water-Borne\nPathogen Research Lab, Murdoch University, Perth, Australia.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 09-JAN-2018\nAssembly Method :: SPAdes v. 3.11\nAssembly Name :: Bt-1268-Bc-F10_MetSPA\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 1320.8x\nSequencing Technology :: Illumina NextSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 09/13/2022 23:29:11\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.2\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 1,077\nCDSs (total) :: 1,039\nGenes (coding) :: 1,024\nCDSs (with protein) :: 1,024\nGenes (RNA) :: 38\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 32\nncRNAs :: 3\nPseudo Genes (total) :: 15\nCDSs (without protein) :: 15\nPseudo Genes (ambiguous residues) :: 0 of 15\nPseudo Genes (frameshifted) :: 10 of 15\nPseudo Genes (incomplete) :: 5 of 15\nPseudo Genes (internal stop) :: 3 of 15\nPseudo Genes (multiple problems) :: 3 of 15\n##Genome-Annotation-Data-END##
tick removed while feeding from Echidna (Tachyglossi aculeatus)
COORDINATES: protein motif:HMM:NF016524.2
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010258365.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
PBSX family phage terminase large subunit
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_014023220.1
COORDINATES: protein motif:HMM:NF018761.2
COORDINATES: similar to AA sequence:RefSeq:WP_010259399.1
COORDINATES: protein motif:HMM:NF014983.2
COORDINATES: similar to AA sequence:RefSeq:WP_010257864.1
COORDINATES: similar to AA sequence:RefSeq:WP_010883814.1
COORDINATES: similar to AA sequence:RefSeq:WP_010257876.1
COORDINATES: protein motif:HMM:NF019051.2
COORDINATES: similar to AA sequence:RefSeq:WP_002658554.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012539755.1
COORDINATES: similar to AA sequence:RefSeq:WP_012665023.1
COORDINATES: similar to AA sequence:RefSeq:WP_014540912.1
COORDINATES: similar to AA sequence:RefSeq:WP_014017452.1
COORDINATES: protein motif:HMM:NF017358.2
COORDINATES: similar to AA sequence:RefSeq:WP_010883796.1
COORDINATES: similar to AA sequence:RefSeq:WP_010256740.1
COORDINATES: protein motif:HMM:NF017423.2
COORDINATES: similar to AA sequence:RefSeq:WP_008882883.1
COORDINATES: similar to AA sequence:RefSeq:WP_010883841.1
DUF276 is restricted to Borreliella and related spirochetes; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014486178.1
COORDINATES: protein motif:HMM:NF016941.2
COORDINATES: similar to AA sequence:RefSeq:WP_002658481.1
COORDINATES: similar to AA sequence:RefSeq:WP_010257832.1
BlyB family putative holin accessory protein
COORDINATES: protein motif:HMM:NF017132.2
COORDINATES: similar to AA sequence:RefSeq:WP_011703776.1