Corynebacterium efficiens YS-314 plasmid pCE3, complete sequence.
type: Entry
definition: Corynebacterium efficiens YS-314 plasmid pCE3, complete sequence.
sequence version: NC_004320.1
sequence date: 2022-12-24
sequence: sequence
division: CON
label: NC_004320.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMD00061103
keyword: RefSeq
source: Corynebacterium efficiens YS-314
organism: Corynebacterium efficiens YS-314
taxonomy: Bacteria; Actinomycetota; Actinomycetes; Mycobacteriales; Corynebacteriaceae; Corynebacterium.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nAP005226.1.\nKawarabayasi, Y is officially affiliated with the National\nInstitute of Advanced Industrial Science and Technology, Tsukuba,\nIbaraki, 305-8566 Japan\nThe other authers are at the National Institute of Technology and\nEvaluation, Shibuya-ku, Tokyo, 151-0066 Japan\nHomology analysis is performed by Smith-Waterman algorithm against\nSwiss_Prot release 40.0; and PIR-Protein release 70.0.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/24/2022 02:19:47\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,949\nCDSs (total) :: 2,875\nGenes (coding) :: 2,826\nCDSs (with protein) :: 2,826\nGenes (RNA) :: 74\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 56\nncRNAs :: 3\nPseudo Genes (total) :: 49\nCDSs (without protein) :: 49\nPseudo Genes (ambiguous residues) :: 0 of 49\nPseudo Genes (frameshifted) :: 27 of 49\nPseudo Genes (incomplete) :: 31 of 49\nPseudo Genes (internal stop) :: 5 of 49\nPseudo Genes (multiple problems) :: 12 of 49\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 48672
topology: circular
so has quality: SO_0000988
location: 1..48672
location: region:1-48672:1
RO_0002162: 196164

NC_004320
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMD00061103
type: BioSample
SIO_000068: biosample

1
title: The entire sequence of plasmid maintained by Corynebacterium efficiens YS-314
author: Kawarabayasi, Y.
author: Yamazaki, J.
author: Hino, Y.
author: Kikuchi, H.
journal: Published Only in Database (2002)

2
title: Direct Submission
author: Kawarabayasi, Y.
author: Yamazaki, J.
author: Hino, Y.
author: Kikuchi, H.
author: Director-General of Biotechnology Center.
journal: Submitted (17-MAY-2002) Contact:Director-General of Biotechnology Center National Institute of Technology and Evaluation, Biotechnology Center; Nishihara 2-49-10, Shibuya-ku, Tokyo 151-0066, Japan

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:48672:1
position: 48672
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-48672:1:source
so part of: sequence
organism: Corynebacterium efficiens YS-314
mol type: genomic DNA
strain: YS-314
type material: type strain of Corynebacterium efficiens
plasmid: pCE3
note: large-sized plasmid DNA in Corynebacterium efficiens YS-314

196164
type: Taxonomy
SIO_000068: taxonomy

CE_RS15100
type: Gene
subclass of: SO_0000704
RO_0002162: 196164
locus tag: CE_RS15100
so part of: sequence
location: join(48166..48672,1..162)
location: region:1-48672:1
so has part: feature:48166-48672:1:exon
so has part: feature:1-162:1:exon
subclass of: SO_0000010

urn:…
SIO_000300: 1
SIO_000628: feature:48166-48672:1:exon

position:48166:1
position: 48166
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1-162:1:exon

position:162:1
position: 162
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

CE_RS15100
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 196164
locus tag: CE_RS15100
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAMKFRKTFLSLSLAALLPITITQPVVASPSGSSQVGAFENSENVDIQIMDTPVIDNALAEKVEPFIELRGSVFFLTAQGKEILNAQETREVEQQLTNTNQLIEHAATHENASQTVGEKSVTFSQPDTKPTDGGGFATFAHGVNSIKFHWWGMEIFLSQTTLRNLGAGAAIAGIWIPASWVARALSTLGVAGTSLVPHGIAFEYHIPTNPLGGWTIRNVRWQ
SIO_010081: CE_RS15100
subclass of: SO_0000673
so part of: CE_RS15100
location: join(48166..48672,1..162)
location: region:1-48672:1
so has part: feature:48166-48672:1:exon
so has part: feature:1-162:1:exon

WP_143758382.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:48166-48672:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1-162:1:exon

CE_RS15530
type: Gene
subclass of: SO_0000704
RO_0002162: 196164
locus tag: CE_RS15530
so part of: sequence
location: complement(835..1383)
location: region:835-1383:-1
so has part: feature:835-1383:-1:exon
subclass of: SO_0000010

position:835:-1
position: 835
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1383:-1
position: 1383
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:835-1383:-1:exon

CE_RS15530
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 196164
locus tag: CE_RS15530
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAVIYPPSYISGAYTFALLPIGAGLIPVITWSALWGAWPIAVTENHRLRSAYLLWQGLVVVICALGAGGAELLAGDGATEVAQKVVLWVLTGVFLVLVSTALCIRFGPGVSIAATVIWTIVSATLGGDVLADTILWVVAVPAWPETATSTGRWVFAVVTHMVCAVPGVMWVRREIRRAERRG
SIO_010081: CE_RS15530
subclass of: SO_0000673
so part of: CE_RS15530
location: complement(835..1383)
location: region:835-1383:-1
so has part: feature:835-1383:-1:exon

WP_006770458.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:835-1383:-1:exon

CE_RS00095
type: Gene
subclass of: SO_0000704
RO_0002162: 196164
locus tag: CE_RS00095
old locus tag: CE3P002
so part of: sequence
location: 1547..2733
location: region:1547-2733:1
so has part: feature:1547-2733:1:exon
subclass of: SO_0000010

position:1547:1
position: 1547
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2733:1
position: 2733
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1547-2733:1:exon

CE_RS00095
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 196164
locus tag: CE_RS00095
old locus tag: CE3P002
inference: COORDINATES: similar to AA sequence:RefSeq:WP_076611184.1
ribosomal slippage: true
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS3 family transposase
translation: MPSKTYTEEFKRDAVALYENSPGASIQTIATDLGINRATLANWVKKYGTATPSETPSPASVTEAERIRQLEREVSRLREERDILRKAAKYFAEGDELVIRFRFVDDAQKNHSVKRLCEVLKLNRSSYYKWKNSSSARRKRLISDALLGARVKTVFTAEKGCYGAKRITAELKDQADQTPVNHKRVARVMRELKLFGYTKKRKVTTTVSDQKKPVFPDLVGRKFTADKPNQLYVGDITYLPIADGSNMYLATVIDCYSRRLVGFSIADHMRTSLVQDALTMAKGQRGDLKGAIFHSDHGSVYTSHAFQGACKDLGIRQSMGSIGTSADNALAESFNAAMKREVLQDSKTFINQLICRRDVFRWCTRYNTVRRHSWCKYLAPAVFEERGPAILKSAS
SIO_010081: CE_RS00095
subclass of: SO_0000673
so part of: CE_RS00095
location: join(1547..1826,1826..2733)
location: region:1547-2733:1
so has part: feature:1547-1826:1:exon
so has part: feature:1826-2733:1:exon

WP_173362552.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1547-1826:1:exon

position:1826:1
position: 1826
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1826-2733:1:exon

CE_RS14570
type: Gene
subclass of: SO_0000704
RO_0002162: 196164
locus tag: CE_RS14570
so part of: sequence
location: complement(2640..3695)
location: region:2640-3695:-1
so has part: feature:2640-3695:-1:exon
subclass of: SO_0000010

position:2640:-1
position: 2640
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3695:-1
position: 3695
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2640-3695:-1:exon

CE_RS14570
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 196164
locus tag: CE_RS14570
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011075355.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTATDLHPHTRSTNEKKIGTWPGVIQAELIRVKATAVVWFPAIGLLIGALSSLFSLWSSNATDASGLLSWQAMYVTGMAAPILALLAGLAETREKKSRHGGTDIRPVSAWKIRTGRLLILVGLSGLFYAFNFGGVWLYAVIDGRLGAQRILLAGLLGWIGSIATIGLFSAIARATNLITALLLAVAYQLAGTLTAEASWWYFFPPAWPVRLLLPTMGIHSNAVALDPTDPLTSESPLVGIVLNLVLAVAMMGLSIVFNGQRVLRTPFRPQRASLSTDAESSATAMDDTTVSHLEFIRRDHVQDTREKQWARPPDGGHGGFNQEADFRIAGPRSSNTAGARYLHQECLRTVL
SIO_010081: CE_RS14570
subclass of: SO_0000673
so part of: CE_RS14570
location: complement(2640..3695)
location: region:2640-3695:-1
so has part: feature:2640-3695:-1:exon

WP_011069217.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2640-3695:-1:exon

CE_RS14575
type: Gene
subclass of: SO_0000704
RO_0002162: 196164
locus tag: CE_RS14575
so part of: sequence
location: complement(3692..4417)
location: region:3692-4417:-1
so has part: feature:3692-4417:-1:exon
subclass of: SO_0000010

position:3692:-1
position: 3692
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4417:-1
position: 4417
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3692-4417:-1:exon

CE_RS14575
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 196164
locus tag: CE_RS14575
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014307745.1
GO function: GO:0005524 - ATP binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ATP-binding cassette domain-containing protein
translation: MNTTLKPVALSCDDLRISFGQRTVLDGFSMHVKTGRVHALLGRNGAGKSTCFRIILGLEDRGAGTVEIFGEKLSQDNLINIGASINGPALYSHLSARDNVRIHAKLLGLGLDEVDHVLGMVGLDDEDKKKARNFSTGMKARLALAIAMLGSPPVLILDEPQNGLDPQGIVDLRGFLRSWTAQGGTVLVSSHQLGEVARLTDDITVLVDGRAQYSGPLEDFAAPGQLEEEFLRMTNPQVGHP
SIO_010081: CE_RS14575
subclass of: SO_0000673
so part of: CE_RS14575
location: complement(3692..4417)
location: region:3692-4417:-1
so has part: feature:3692-4417:-1:exon

WP_011069218.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3692-4417:-1:exon

CE_RS14580
type: Gene
subclass of: SO_0000704
RO_0002162: 196164
locus tag: CE_RS14580
so part of: sequence
location: complement(4532..5203)
location: region:4532-5203:-1
so has part: feature:4532-5203:-1:exon
subclass of: SO_0000010

position:4532:-1
position: 4532
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5203:-1
position: 5203
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4532-5203:-1:exon

CE_RS14580
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 196164
locus tag: CE_RS14580
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006770461.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: response regulator transcription factor
translation: MKDNEQPIRVLIADDQPLIVTALTTILGTQHNIDVVATASNGQKAIEAAQQWAIDVAVLDIQMPYVNGIDAAQAIKQHRESTKILMLTTFDSEDLVRRALEVGVQGFLLKDAGPEALIDAINRIYHGASVLSPEVTEYVINVFRVSSPQPPSPCDTLFEALTPRELEVLKRVAQAETNAEIANYLHIGSETVKTYVSRLISKIGVRDRVGLAVWAHTSGIVDQ
SIO_010081: CE_RS14580
subclass of: SO_0000673
so part of: CE_RS14580
location: complement(4532..5203)
location: region:4532-5203:-1
so has part: feature:4532-5203:-1:exon

WP_231295184.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4532-5203:-1:exon

CE_RS14585
type: Gene
subclass of: SO_0000704
RO_0002162: 196164
locus tag: CE_RS14585
so part of: sequence
location: complement(5245..6522)
location: region:5245-6522:-1
so has part: feature:5245-6522:-1:exon
subclass of: SO_0000010

position:5245:-1
position: 5245
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6522:-1
position: 6522
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5245-6522:-1:exon

CE_RS14585
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 196164
locus tag: CE_RS14585
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006770462.1
GO component: GO:0016020 - membrane [Evidence IEA]
GO function: GO:0000155 - phosphorelay sensor kinase activity [Evidence IEA]; GO:0046983 - protein dimerization activity [Evidence IEA]
GO process: GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: histidine kinase
translation: MIGLLRSIPARIDDVGFSALATVLTVIYGAIALEGSHHEIVQVILSALFIPALLFWRRAPISSATALLLLISLWTWNWITALPINLGFSPFILVVPIVVYSTTRWVKQRIISTLFYVTTLIYCFVSPIMWYQTETGMIYHNNQQGLSWLLIQWLGLTVLRQIAINRRHEEARGEERRRSQEHAAMEEQAAIRERERVQIAREIHDVLAHSLTLINIQASAGIMVSRHGPTGTDAEIEEILQRIQETSSSSLSEVRAIVKALRSDLPTESAHKIMSLVSTVENLEQYQQAGMAITTSLSSPTVLEDLSASTPFIVQLAISRILNESLTNVARHQGVDSKVNISISVDDMTKKINIDIESWAPHGVNIAHTPPLMGTKSGLTGMKERVESLMGTITYSSQSGYFRVQATVPTRSFPQEHSLHDVLAP
SIO_010081: CE_RS14585
subclass of: SO_0000673
so part of: CE_RS14585
location: complement(5245..6522)
location: region:5245-6522:-1
so has part: feature:5245-6522:-1:exon

WP_006770462.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5245-6522:-1:exon

CE_RS14590
type: Gene
subclass of: SO_0000704
RO_0002162: 196164
locus tag: CE_RS14590
so part of: sequence
location: 6617..7482
location: region:6617-7482:1
so has part: feature:6617-7482:1:exon
subclass of: SO_0000010

position:6617:1
position: 6617
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7482:1
position: 7482
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6617-7482:1:exon

CE_RS14590
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 196164
locus tag: CE_RS14590
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013474031.1
ribosomal slippage: true
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS5 family transposase
translation: MVGRGELTDKAWERIAPLLPDNAGGRRWRDHRQVINAILWKLRTGAPWRDLPERYGPWKTAHERLRRWTMDGTWQKILDEAIVKDDAVGEVEWIISVDSSVIRAHQHAAGARKKGGAHIRSRPSLLDGECLGRSRGGLSSKIHLAVDARGLPMNVILTGGQAGDNPQLIPLLDGLNVRRDGPGRPRSRPQAVVADKAYSHPSTRQAMRERRVRFISPEKTDQIARRRAKGAAGGRPPVFDREVYRGRNVVERCFARLKQFRGLATRYAKRAAYYAAEVTIAAIILWLR
SIO_010081: CE_RS14590
subclass of: SO_0000673
so part of: CE_RS14590
location: join(6617..6992,6992..7482)
location: region:6617-7482:1
so has part: feature:6617-6992:1:exon
so has part: feature:6992-7482:1:exon

WP_231844052.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6617-6992:1:exon

position:6992:1
position: 6992
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:6992-7482:1:exon

CE_RS00110
type: Gene
subclass of: SO_0000704
RO_0002162: 196164
locus tag: CE_RS00110
old locus tag: CE3P009
so part of: sequence
location: 7546..8178
location: region:7546-8178:1
so has part: feature:7546-8178:1:exon
subclass of: SO_0000010

position:7546:1
position: 7546
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8178:1
position: 8178
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7546-8178:1:exon

CE_RS00110
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 196164
locus tag: CE_RS00110
old locus tag: CE3P009
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006770465.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family protein
translation: MTPDIKTSRNKDIKKGYVMIIGIINSKGGVGKTTTAINLATVFSNEGYSVQVLDMDPQGSASEWADRAADAGTPLPFAVESTNIKRLPRVVNETEFTIIDTPPGDPAIMDAAIAASDFVIVPVQSSPIELVRVSETLPSLASTPHGVLLTSVRFGTRQFEETVEGLNQQGISAFDTKIPIREGIRAAFGGVPTKFEGYDFLAKEIMEAMA
SIO_010081: CE_RS00110
subclass of: SO_0000673
so part of: CE_RS00110
location: 7546..8178
location: region:7546-8178:1
so has part: feature:7546-8178:1:exon

WP_231295185.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7546-8178:1:exon

CE_RS00115
type: Gene
subclass of: SO_0000704
RO_0002162: 196164
locus tag: CE_RS00115
old locus tag: CE3P010
so part of: sequence
location: 8178..8393
location: region:8178-8393:1
so has part: feature:8178-8393:1:exon
subclass of: SO_0000010

position:8393:1
position: 8393
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8178-8393:1:exon

CE_RS00115
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 196164
locus tag: CE_RS00115
old locus tag: CE3P010
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006770466.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: toxin-antitoxin system HicB family antitoxin
translation: MAIKKASDFIKAPAEARPMKQAFKTGEVKAFTLRMDAELHQRLKIKAAEEGRTMTDILDELARGYLDGKTS
SIO_010081: CE_RS00115
subclass of: SO_0000673
so part of: CE_RS00115
location: 8178..8393
location: region:8178-8393:1
so has part: feature:8178-8393:1:exon

WP_006770466.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8178-8393:1:exon

CE_RS00120
type: Gene
subclass of: SO_0000704
RO_0002162: 196164
locus tag: CE_RS00120
old locus tag: CE3P011
so part of: sequence
location: 8817..10373
location: region:8817-10373:1
so has part: feature:8817-10373:1:exon
subclass of: SO_0000010

position:8817:1
position: 8817
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10373:1
position: 10373
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8817-10373:1:exon

CE_RS00120
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 196164
locus tag: CE_RS00120
old locus tag: CE3P011
inference: COORDINATES: protein motif:HMM:NF015076.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication initiation protein
translation: MPVTLGDHAPSLWSDTQRYTDEDTYQRDRDSWFDTHIVTHQSRELVDTGWCHHDAEILLSHLGRDGLHCAKDRAGITKAWSKTKDQHGHRTPLIWPRERVHLAEYIHFTNPTYAAVIVIDIDHVGAPGGFLSGLDGFVADKVEKLAHLRLGPNWIGINPESGKSQMIWYIDPVYRTPGEVSKPWSLLEALHTELQAFFEADKNFSHGWSRNPIYSGDNLGAYRWYAQHHEVFHMRLLSTGLWMLKGDTVATMEDKGVADRRHTQRFSSGRELINAARANTERARQAMQAREVLAGLEDDDLAKAFEASDPDVIDGVRVVWQSPGRAQRDVTAFQHALKTAGRLNRAGKKMTDDAIIDAYREAYEVAHSVGADDRPREEPPMRDLRSLARRVRGYVASNKRVEHAVVKENPTDTRMRPQERKALATLGRRGGKKAAERWKDPESDYAKNQLETLKKTQRKKKIQGQTTRARIQAFIGEQYINLGRVPTRKEIATEVGCTSRTVTTHLAALRNAGLLPQE
SIO_010081: CE_RS00120
subclass of: SO_0000673
so part of: CE_RS00120
location: 8817..10373
location: region:8817-10373:1
so has part: feature:8817-10373:1:exon

WP_162096704.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8817-10373:1:exon

CE_RS15705
type: Gene
subclass of: SO_0000704
RO_0002162: 196164
locus tag: CE_RS15705
pseudo: true
so part of: sequence
location: 10629..>10901
location: region:10629-10901:1
so has part: feature:10629-10901:1:exon
subclass of: SO_0000010

position:10629:1
position: 10629
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10901:1
position: 10901
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10629-10901:1:exon

CE_RS15705
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 196164
locus tag: CE_RS15705
inference: COORDINATES: protein motif:HMM:NF025696.2
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: winged helix-turn-helix domain-containing protein
SIO_010081: CE_RS15705
subclass of: SO_0000673
so part of: CE_RS15705
location: 10629..>10901
location: region:10629-10901:1
so has part: feature:10629-10901:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:10629-10901:1:exon

CE_RS00125
type: Gene
subclass of: SO_0000704
RO_0002162: 196164
locus tag: CE_RS00125
old locus tag: CE3P012
so part of: sequence
location: 10929..11558
location: region:10929-11558:1
so has part: feature:10929-11558:1:exon
subclass of: SO_0000010

position:10929:1
position: 10929
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11558:1
position: 11558
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10929-11558:1:exon

CE_RS00125
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 196164
locus tag: CE_RS00125
old locus tag: CE3P012
EC number: 3.1.21.-
inference: COORDINATES: protein motif:HMM:NF016362.2
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0004519 - endonuclease activity [Evidence IEA]
GO process: GO:0009307 - DNA restriction-modification system [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: restriction endonuclease
translation: MIYSDANAFFSPYWPKPSPTAEAAEETADSPSIEAPSLQNSDEVMDTAEQANRHRVGAELLAALREVDPEFFERVVIDVLLAMGYGGAHGKGSAIGRSHDGGIDGIIDEDALGLDKIYVQAKRYAKGNNVGQPEIQAFVGAMHGRAAHKGVFFTTSAFTSSARSYAAGIPTRVVLIDGPRLVDLMMRYRVGVQAQRTYITLGFDQDYFE
SIO_010081: CE_RS00125
subclass of: SO_0000673
so part of: CE_RS00125
location: 10929..11558
location: region:10929-11558:1
so has part: feature:10929-11558:1:exon

WP_231295187.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10929-11558:1:exon

CE_RS00130
type: Gene
subclass of: SO_0000704
RO_0002162: 196164
locus tag: CE_RS00130
so part of: sequence
location: complement(11627..11806)
location: region:11627-11806:-1
so has part: feature:11627-11806:-1:exon
subclass of: SO_0000010

position:11627:-1
position: 11627
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11806:-1
position: 11806
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11627-11806:-1:exon

CE_RS00130
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 196164
locus tag: CE_RS00130
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAIIVDTWDEIFIGADTAEITRQLLERIPVSPSEEMLTELAAAILGCDTLDIIVTHTEN
SIO_010081: CE_RS00130
subclass of: SO_0000673
so part of: CE_RS00130
location: complement(11627..11806)
location: region:11627-11806:-1
so has part: feature:11627-11806:-1:exon

WP_006770469.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11627-11806:-1:exon

CE_RS00135
type: Gene
subclass of: SO_0000704
RO_0002162: 196164
locus tag: CE_RS00135
old locus tag: CE3P013
so part of: sequence
location: 12032..15592
location: region:12032-15592:1
so has part: feature:12032-15592:1:exon
subclass of: SO_0000010

position:12032:1
position: 12032
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15592:1
position: 15592
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12032-15592:1:exon

CE_RS00135
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 196164
locus tag: CE_RS00135
old locus tag: CE3P013
inference: COORDINATES: protein motif:HMM:NF020332.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MobF family relaxase
translation: MLTIGKMHGESVAYYESTVDACVAERGPDGYYSEDGRRPATAWVVSPSSRLEASVSAFLGVESGDVVAGKQVAKWFNSAQAPSGKSLGRRPGASGVPGFDLTFCAPKSVSLVWGFGDSSMKKIVDEAHAQAVSAALSYLSEHAGYTRKASEHDPNEMILARVSGLSGVKYEHKTSRAGDPHVHSHVLLSNRQLCPDGKSRTLDSKSVYHEARAAGMLYQSVLRSTLSKNLGVQWAEVSNGCAEIAGLDAPEVIEAYSTRMREINDWKHENGADFAGASRMGQAITRRVKDTDTPMEELHARWMAHSVGMKVYDTVASFAQNTASESAHREVTLPSPAAVINAVIEQRSTFTRADLVEKTAELMPVGIAPEAIVGHVEAIVDQIIAEELAWSVNPDMARSHSRTAREGSQRFTAEAVVEEVNDGIDLATARVNRGVDASSIRPIKDTLSVDQARAMRAVVASHYRASVVVAPAGAGKTSSLKAARQAWERAGKTVVGLAPTGKAADVMVREDVAHTSATIAKALVGTREMTPKQIALKLGWDASTVVVVDEAGMVATPDMATLLQVTAAADARIVFVGDPHQYSAVKARSGMLATLAYELPDSVELTEVFRQKHAGERLASQLLRNGDETDTARAAQWYADNNRLHAGSSTAMLMDALTSWAKDKDKGLESLLVASTREDVDLLNRLAQQVCGDTGAINPLGHQVRLSSGHQGFVGDVILTKRNNYDLLTDAGDIVRNGQRWIIQDVHEDGSMTARRMDDTHATAHLPVDYVKDHVQLGYASTGHAAQGATVDTCHVVAGLGQVDRAGVYVPLTRGRYENHLYLMDTRAGDPDTGHGSLLVEERRETPEYARDLLINAAKRDRADITPQQLWRDARADFELAKLSSNLVVDEDPYAGTHMAAIMAQRQSMRRARLEEFYQATREQRAAKKKKPARALTPEEIVEASLKDRPLADIPGWLLEQMVDAPHTVVETYQATEQTYHVLVDKAQQAEEAKQHLPGVVATLEELQAKKCQVEQGFTAARAELETERSKPGLVKLVRGGKLKEAQFQVDDLREQLVHTTREVETASAQLRDYQDMIATAPTPEQVGEQENKLAHYRRAVEALDNPAAVATEDQWRSHATWEVLRADRTRRDPQERPGMKEVLRAAGGDKDLSTMLNNPHPSTPTRLQPPVQRPSSPERDRGYGL
SIO_010081: CE_RS00135
subclass of: SO_0000673
so part of: CE_RS00135
location: 12032..15592
location: region:12032-15592:1
so has part: feature:12032-15592:1:exon

WP_011069223.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12032-15592:1:exon

CE_RS00140
type: Gene
subclass of: SO_0000704
RO_0002162: 196164
locus tag: CE_RS00140
so part of: sequence
location: 15589..15888
location: region:15589-15888:1
so has part: feature:15589-15888:1:exon
subclass of: SO_0000010

position:15589:1
position: 15589
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15888:1
position: 15888
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15589-15888:1:exon

CE_RS00140
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 196164
locus tag: CE_RS00140
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006770478.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTAKNGDGLNDAARSYLEAVSRRLHQEYEEQFRQAQRRSEAQEELWKLVDQLEEISIKAAHHMKVFQDAGMELPEIAKLMCVPRGVARMFLEIAEGGKN
SIO_010081: CE_RS00140
subclass of: SO_0000673
so part of: CE_RS00140
location: 15589..15888
location: region:15589-15888:1
so has part: feature:15589-15888:1:exon

WP_006770471.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15589-15888:1:exon

CE_RS00145
type: Gene
subclass of: SO_0000704
RO_0002162: 196164
locus tag: CE_RS00145
so part of: sequence
location: complement(15944..16270)
location: region:15944-16270:-1
so has part: feature:15944-16270:-1:exon
subclass of: SO_0000010

position:15944:-1
position: 15944
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16270:-1
position: 16270
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15944-16270:-1:exon

CE_RS00145
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 196164
locus tag: CE_RS00145
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MATPSARMTINLPEHLHKRLKYQAFMRDTTMNRIMERATAGLVDYLEADNSEISRHSPDGRPNVTISTSVTAEQADLFHRLLDQRRETAHDVLERAIAAYLANVPSTR
SIO_010081: CE_RS00145
subclass of: SO_0000673
so part of: CE_RS00145
location: complement(15944..16270)
location: region:15944-16270:-1
so has part: feature:15944-16270:-1:exon

WP_035110095.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15944-16270:-1:exon

CE_RS14595
type: Gene
subclass of: SO_0000704
RO_0002162: 196164
locus tag: CE_RS14595
so part of: sequence
location: 16363..16608
location: region:16363-16608:1
so has part: feature:16363-16608:1:exon
subclass of: SO_0000010

position:16363:1
position: 16363
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16608:1
position: 16608
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16363-16608:1:exon

CE_RS14595
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 196164
locus tag: CE_RS14595
inference: COORDINATES: protein motif:HMM:NF024949.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix transcriptional regulator
translation: MTPDKKILIQLGDRLREARKQAKLSQEEVAHLSGLHRTYISLVERGGRNISVLNLLSITGVLGVDVGDIVSGLTREPRLNP
SIO_010081: CE_RS14595
subclass of: SO_0000673
so part of: CE_RS14595
location: 16363..16608
location: region:16363-16608:1
so has part: feature:16363-16608:1:exon

WP_006770473.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16363-16608:1:exon

CE_RS14600
type: Gene
subclass of: SO_0000704
RO_0002162: 196164
locus tag: CE_RS14600
so part of: sequence
location: 16744..18813
location: region:16744-18813:1
so has part: feature:16744-18813:1:exon
subclass of: SO_0000010

position:16744:1
position: 16744
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18813:1
position: 18813
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16744-18813:1:exon

CE_RS14600
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 196164
locus tag: CE_RS14600
inference: COORDINATES: protein motif:HMM:NF019313.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: KAP family NTPase
translation: MIIGSDDPIKSVEEDEFGRSGYAAHVAKLINNSHSVETSIVFGLTGAWGSGKTSMLAMIEKELKEVNGDWHIAYFTPWATSDVNGLFADFYSSLEHALSSEGEREFSTILGEMLTIAAPIAKIIPVVGDATQGALERVGKSLQDQPPWKETFEKASSEIKKLNRKILIIADDIDRLQGEELMALLKVVRLLGRFPGVDFLLAYDEKTVTQTLAAMGVAGKGESGSQKFMEKIIQYPLAIPPLLPTQLISNLMHKLDPYLEQMEESDTFRIRLQHLRPVLLAQLSTPRAIGRYIAQVHHHLATFSAEEIHLGDALIMTLLKTNFRTVHDLLPRYKDQLLTGRKDGKRVAASSTDKDFFNLDNLVRHLPEEDQGDALELVKDLFPRIKQPTRFHFVIREKRRISDKNYFDRYFAMGIPGYDVPDILVASAISNVITGDDTAFVELLSNGDADRFDLVINKAEESTALLLSDEERLVVLRTILPLLDKSGGIDSPPTTRKWTLYGWIGRLLSQMSDSADPQAIYGALQMVTDHFDRMYIIRSIFADDKSHAWISELVELASGDLIETVLNNLRHKNQASQEEGVEFIINQLAEWNQLNLLAKGVEAEMEADNFAAGDLVARFVFLEEVFTHGVAEKEKRLRFNKEKFNQVVPPGLGNRWGTEEVAFEEGGLSWENRKNFAVSQLRRKNDEHQ
SIO_010081: CE_RS14600
subclass of: SO_0000673
so part of: CE_RS14600
location: 16744..18813
location: region:16744-18813:1
so has part: feature:16744-18813:1:exon

WP_011069224.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16744-18813:1:exon

CE_RS00155
type: Gene
subclass of: SO_0000704
RO_0002162: 196164
locus tag: CE_RS00155
old locus tag: CE3P016
pseudo: true
so part of: sequence
location: complement(18835..19667)
location: region:18835-19667:-1
so has part: feature:18835-19667:-1:exon
subclass of: SO_0000010

position:18835:-1
position: 18835
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:19667:-1
position: 19667
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18835-19667:-1:exon

CE_RS00155
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 196164
locus tag: CE_RS00155
old locus tag: CE3P016
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011897899.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: IS5 family transposase
SIO_010081: CE_RS00155
subclass of: SO_0000673
so part of: CE_RS00155
location: complement(18835..19667)
location: region:18835-19667:-1
so has part: feature:18835-19667:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:18835-19667:-1:exon

CE_RS15540
type: Gene
subclass of: SO_0000704
RO_0002162: 196164
locus tag: CE_RS15540
so part of: sequence
location: complement(19927..20145)
location: region:19927-20145:-1
so has part: feature:19927-20145:-1:exon
subclass of: SO_0000010

position:19927:-1
position: 19927
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:20145:-1
position: 20145
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19927-20145:-1:exon

CE_RS15540
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 196164
locus tag: CE_RS15540
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015381820.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ABC transporter ATP-binding protein
translation: MANRGRSVSRSAISGRFVTKAHAKRSPKTTVNERVGKGTSNKRLVTRSAISGRFVTDRWGKENPGGTIRQRV
SIO_010081: CE_RS15540
subclass of: SO_0000673
so part of: CE_RS15540
location: complement(19927..20145)
location: region:19927-20145:-1
so has part: feature:19927-20145:-1:exon

WP_081447274.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19927-20145:-1:exon

CE_RS00160
type: Gene
subclass of: SO_0000704
RO_0002162: 196164
locus tag: CE_RS00160
old locus tag: CE3P017
so part of: sequence
location: 20694..21404
location: region:20694-21404:1
so has part: feature:20694-21404:1:exon
subclass of: SO_0000010

position:20694:1
position: 20694
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21404:1
position: 21404
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20694-21404:1:exon

CE_RS00160
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 196164
locus tag: CE_RS00160
old locus tag: CE3P017
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006770492.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS6-like element IS1628 family transposase
translation: MGIFSGRQFPREIILWAVRWYCRYGVSYRDLEEMMTERGVPVDHTTIYRWVQKYAPELDKKTRWYRQVPDWQARSWRVDETYIRVGGKWCYLYRAITAGGQTLDFYLSPKRNVAAAKRFLAKTLRSNKSAGYPRVISTDKAPSLARAISELKAEGVCPSTVEHRRVKYLNNVIEGDHGRLKRILGPKGAFKNQTSAYRTLKGMEAMHSLRKGQGTMFAYGHPNPDAVIVSRVFETA
SIO_010081: CE_RS00160
subclass of: SO_0000673
so part of: CE_RS00160
location: 20694..21404
location: region:20694-21404:1
so has part: feature:20694-21404:1:exon

WP_011069225.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20694-21404:1:exon

CE_RS00165
type: Gene
subclass of: SO_0000704
RO_0002162: 196164
locus tag: CE_RS00165
so part of: sequence
location: 21600..21899
location: region:21600-21899:1
so has part: feature:21600-21899:1:exon
subclass of: SO_0000010

position:21600:1
position: 21600
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21899:1
position: 21899
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21600-21899:1:exon

CE_RS00165
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 196164
locus tag: CE_RS00165
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006770471.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTAKNSDGLNDATRSYLEAVSRRIHQEYEEQFRQLQRRSEAQEELWKLVDQFEEISIKAAQHMKVFQDAGMELPEIAKLMCVPRGVARMFLEIAENSKN
SIO_010081: CE_RS00165
subclass of: SO_0000673
so part of: CE_RS00165
location: 21600..21899
location: region:21600-21899:1
so has part: feature:21600-21899:1:exon

WP_006770478.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:21600-21899:1:exon

CE_RS00170
type: Gene
subclass of: SO_0000704
RO_0002162: 196164
locus tag: CE_RS00170
so part of: sequence
location: complement(21896..22165)
location: region:21896-22165:-1
so has part: feature:21896-22165:-1:exon
subclass of: SO_0000010

position:21896:-1
position: 21896
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:22165:-1
position: 22165
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21896-22165:-1:exon

CE_RS00170
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 196164
locus tag: CE_RS00170
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTWVHWLELIFAKQLRTVPRVTRVVVGDTRLVYYEPQDQTPASGAKAEWVQTSLFQGGFEGIGLDEAVRGAIDGAVAKLGHGGGSHHAS
SIO_010081: CE_RS00170
subclass of: SO_0000673
so part of: CE_RS00170
location: complement(21896..22165)
location: region:21896-22165:-1
so has part: feature:21896-22165:-1:exon

WP_143758377.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:21896-22165:-1:exon

CE_RS15545
type: Gene
subclass of: SO_0000704
RO_0002162: 196164
locus tag: CE_RS15545
so part of: sequence
location: 22541..22711
location: region:22541-22711:1
so has part: feature:22541-22711:1:exon
subclass of: SO_0000010

position:22541:1
position: 22541
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22711:1
position: 22711
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22541-22711:1:exon

CE_RS15545
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 196164
locus tag: CE_RS15545
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006770480.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAQLRKERELLRDAALVMARFATDSGARTDLDKAMEAFGLDRAELEAELAAEDSCL
SIO_010081: CE_RS15545
subclass of: SO_0000673
so part of: CE_RS15545
location: 22541..22711
location: region:22541-22711:1
so has part: feature:22541-22711:1:exon

WP_006770480.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:22541-22711:1:exon

CE_RS15105
type: Gene
subclass of: SO_0000704
RO_0002162: 196164
locus tag: CE_RS15105
so part of: sequence
location: 22721..23032
location: region:22721-23032:1
so has part: feature:22721-23032:1:exon
subclass of: SO_0000010

position:22721:1
position: 22721
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:23032:1
position: 23032
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22721-23032:1:exon

CE_RS15105
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 196164
locus tag: CE_RS15105
inference: COORDINATES: protein motif:HMM:NF016876.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system RelE/ParE family toxin
translation: MPLPEPRARVRLTDDAVADLRRLKRKDPQIVREVFKKMLLLERATDAGEPLLGALVGFRKLVVGDCDYRIAWGKRPMMPISRSWRSRRSGPWEPGSTVKSTTR
SIO_010081: CE_RS15105
subclass of: SO_0000673
so part of: CE_RS15105
location: 22721..23032
location: region:22721-23032:1
so has part: feature:22721-23032:1:exon

WP_143758378.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:22721-23032:1:exon

CE_RS00175
type: Gene
subclass of: SO_0000704
RO_0002162: 196164
locus tag: CE_RS00175
so part of: sequence
location: 23029..23286
location: region:23029-23286:1
so has part: feature:23029-23286:1:exon
subclass of: SO_0000010

position:23029:1
position: 23029
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:23286:1
position: 23286
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23029-23286:1:exon

CE_RS00175
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 196164
locus tag: CE_RS00175
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSHWVKQLQQADHPHTRALAEVIEEIGRLYGGIHAHLQPSQVPPLPPWLIQALENDLRLSPEVINELSQDEAQQLLIHHWTQPQD
SIO_010081: CE_RS00175
subclass of: SO_0000673
so part of: CE_RS00175
location: 23029..23286
location: region:23029-23286:1
so has part: feature:23029-23286:1:exon

WP_143758379.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:23029-23286:1:exon

CE_RS00180
type: Gene
subclass of: SO_0000704
RO_0002162: 196164
locus tag: CE_RS00180
old locus tag: CE3P019
so part of: sequence
location: complement(23452..24105)
location: region:23452-24105:-1
so has part: feature:23452-24105:-1:exon
subclass of: SO_0000010

position:23452:-1
position: 23452
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:24105:-1
position: 24105
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23452-24105:-1:exon

CE_RS00180
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 196164
locus tag: CE_RS00180
old locus tag: CE3P019
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006770482.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: vitamin K epoxide reductase family protein
translation: MTYPATPDDENEVLVTEPNNDTSLPAFAHHRPFALILLVTGIIGWVASGILVLERLALYEDAEHVTTCDINALVSCGKVMGTWQSELFGFPNPLIGIVAFAVVITTAMAMLAGARFADWYWGGLQAGVSVGLLFIIWLWYQALFVIHILCLYCMVVWAMMIPLFILLTVRNLAHGLFPASASVVRFSSHWAGTLIAVVYVAVAASVFFSFYSDFTSL
SIO_010081: CE_RS00180
subclass of: SO_0000673
so part of: CE_RS00180
location: complement(23452..24105)
location: region:23452-24105:-1
so has part: feature:23452-24105:-1:exon

WP_006770482.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:23452-24105:-1:exon

CE_RS00185
type: Gene
subclass of: SO_0000704
RO_0002162: 196164
locus tag: CE_RS00185
old locus tag: CE3P021
so part of: sequence
location: complement(24115..24822)
location: region:24115-24822:-1
so has part: feature:24115-24822:-1:exon
subclass of: SO_0000010

position:24115:-1
position: 24115
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:24822:-1
position: 24822
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24115-24822:-1:exon

CE_RS00185
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 196164
locus tag: CE_RS00185
old locus tag: CE3P021
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015453104.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: thioredoxin domain-containing protein
translation: MSTPTNPTTSTRPSGNWRKAQIIVWALLAIVVITGIVAFLIGRADSTSAPAPETVVSDAGQVVRDNSRVLSQAPNEKAVLVEFLDFECEACRAAYPFVEELREEYSDTVTFVNRYFPLQGHRNSMPAAVAVEAAAQQGQYEAMYHRMFETQSEWGESAEDKSAVFRGFAEDLGLDMAAYDAAVADPATEERVRLDVADGTALGVGGTPTFFLDGQLLTPDSLEQFRAEVDAAAAD
SIO_010081: CE_RS00185
subclass of: SO_0000673
so part of: CE_RS00185
location: complement(24115..24822)
location: region:24115-24822:-1
so has part: feature:24115-24822:-1:exon

WP_011069227.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:24115-24822:-1:exon

CE_RS00190
type: Gene
subclass of: SO_0000704
RO_0002162: 196164
locus tag: CE_RS00190
old locus tag: CE3P022
so part of: sequence
location: complement(24927..25259)
location: region:24927-25259:-1
so has part: feature:24927-25259:-1:exon
subclass of: SO_0000010

position:24927:-1
position: 24927
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:25259:-1
position: 25259
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24927-25259:-1:exon

CE_RS00190
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 196164
locus tag: CE_RS00190
old locus tag: CE3P022
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015402255.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: metalloregulator ArsR/SmtB family transcription factor
translation: MSTVTVTHTSALSRVGNALSDDTRTEILLTLRHGPARPSVLARQLGVSKQVMSNQLACLRGCGLVSATPQGRNVWYSLADPRLGHALSELLELVVTIDPDCCSPDGCTCT
SIO_010081: CE_RS00190
subclass of: SO_0000673
so part of: CE_RS00190
location: complement(24927..25259)
location: region:24927-25259:-1
so has part: feature:24927-25259:-1:exon

WP_006770484.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:24927-25259:-1:exon

CE_RS00195
type: Gene
subclass of: SO_0000704
RO_0002162: 196164
locus tag: CE_RS00195
old locus tag: CE3P023
so part of: sequence
location: complement(25404..26189)
location: region:25404-26189:-1
so has part: feature:25404-26189:-1:exon
subclass of: SO_0000010

position:25404:-1
position: 25404
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:26189:-1
position: 26189
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:25404-26189:-1:exon

CE_RS00195
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 196164
locus tag: CE_RS00195
old locus tag: CE3P023
EC number: 3.4.-.-
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006841217.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: M23 family metallopeptidase
translation: MRLKAQRPAGGKHRKITTSQTKSRVALVAVAAGAVSSAGIGGATAATLQGEAPVSPEVATVDVELTADDTALPSGATEVAPQILTISEYKPVANLDEQLDKAVEYADERAEAARAEAERLEAERLEAERLANASSVVKPTEGTFTSGFGMRWGSLHAGLDIANVVGTPILAAMGGTVIDSGPASGFGQWIRIQHDDGSIAVYGHMETLDVSVGERVTAGQKIAGMGNRGFSTGSHLHFELYPTGSGAVDPAPWFAEHGITF
SIO_010081: CE_RS00195
subclass of: SO_0000673
so part of: CE_RS00195
location: complement(25404..26189)
location: region:25404-26189:-1
so has part: feature:25404-26189:-1:exon

WP_006770485.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:25404-26189:-1:exon

CE_RS00200
type: Gene
subclass of: SO_0000704
RO_0002162: 196164
locus tag: CE_RS00200
so part of: sequence
location: complement(26615..28624)
location: region:26615-28624:-1
so has part: feature:26615-28624:-1:exon
subclass of: SO_0000010

position:26615:-1
position: 26615
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:28624:-1
position: 28624
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:26615-28624:-1:exon

CE_RS00200
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 196164
locus tag: CE_RS00200
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003847987.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: cytochrome c oxidase assembly protein
translation: MTHPVDDNITPTATDTTTGTTPTIGSRPQERVRPTWPLYLLFFAVAGAIGGTVAYSFLGESLAALGIPNPGIATTFGLPFFRAVGWMLAALSAGSFLFAAFLISPRLPGGDHDRLHQASLSVDGHLASRTGAVAAICFGLIALLMIPLVLSDVSGTPLAQTLGLETLTVAVEQVAMAQVWLIVALIALVTGLTGMMSRAWITQPLLLLGSILMIIPLGLTGHSSSGGNHDHGTNSYLWHLVFLVLWVGGLMALLAHGRRLGPDLDIALRRYSTIALGSIIVMAISGLVNAAIRIELTDLLTTRYGLIIVAKTAGVIILGVFGWIHRAWVIPQVQANPADRRLFRQVAIVEVLVMAAVTGIAITMGRTPPPPPRIPNLSQMATKLGYELSEKPTILNVWGMWRFDLLFGALALLLAVGYLSAVWRTRQAGHTWSSTPTAWWLAGCVTLLVTMSSGIGLNMPAVFSVHMVGHIILSLVIPIFLVLGAPLTLLMTAFAPGAPGRPNIHDWVHAFTRSRLVGVITHPVVNTLQFLVFFYVMYLFIPLYELLISKYAGQLIMNTVLLVSGCFYFWGMLGPDLIPRRRPATVRLGWLVASLPVHLLFGPYLLQLDTILGEEFYRSLLLPWELDLLANQRTAVLAWAAGIVPLAVVVLLLIRQVRGRGETARIAGG
SIO_010081: CE_RS00200
subclass of: SO_0000673
so part of: CE_RS00200
location: complement(26615..28624)
location: region:26615-28624:-1
so has part: feature:26615-28624:-1:exon

WP_231295186.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:26615-28624:-1:exon

CE_RS00205
type: Gene
subclass of: SO_0000704
RO_0002162: 196164
locus tag: CE_RS00205
so part of: sequence
location: 28923..29513
location: region:28923-29513:1
so has part: feature:28923-29513:1:exon
subclass of: SO_0000010

position:28923:1
position: 28923
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:29513:1
position: 29513
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:28923-29513:1:exon

CE_RS00205
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 196164
locus tag: CE_RS00205
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003860216.1
GO component: GO:0042597 - periplasmic space [Evidence IEA]
GO function: GO:0005507 - copper ion binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: copper resistance protein CopC
translation: MIISPMLPRRVLATVVAVGALTVVATPVALAHDSVIGGTPADGEVVEEFPRSIELEFSGLPQEGFSTVAITDQDSGDLLFSGEPTIDGRLVTLDLPADVSGGPGDYTVGFQILSSDGHATRSATTFTVAGDAQTTATTTGADAEPVEETPAAENTAEEDTSGWSDLIVPTLVGLAVFGAIAGAGAGVLVVRRRDAR
SIO_010081: CE_RS00205
subclass of: SO_0000673
so part of: CE_RS00205
location: 28923..29513
location: region:28923-29513:1
so has part: feature:28923-29513:1:exon

WP_035110099.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:28923-29513:1:exon

CE_RS00210
type: Gene
subclass of: SO_0000704
RO_0002162: 196164
locus tag: CE_RS00210
so part of: sequence
location: 29687..30052
location: region:29687-30052:1
so has part: feature:29687-30052:1:exon
subclass of: SO_0000010

position:29687:1
position: 29687
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:30052:1
position: 30052
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:29687-30052:1:exon

CE_RS00210
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 196164
locus tag: CE_RS00210
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003847982.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: metalloregulator ArsR/SmtB family transcription factor
translation: MLTIASRLDVMNRLGRAMADPTRSRILLSLLDAPNYPAQLARELGLTRSNVSNHLTCLRDCGIVVAEPEGRRTRYDIADDHLAQALTALLETTLAVDEDAACLDPQCPVAGCCDTDGGQQS
SIO_010081: CE_RS00210
subclass of: SO_0000673
so part of: CE_RS00210
location: 29687..30052
location: region:29687-30052:1
so has part: feature:29687-30052:1:exon

WP_006770488.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:29687-30052:1:exon

CE_RS00215
type: Gene
subclass of: SO_0000704
RO_0002162: 196164
locus tag: CE_RS00215
old locus tag: CE3P027
so part of: sequence
location: 30049..32022
location: region:30049-32022:1
so has part: feature:30049-32022:1:exon
subclass of: SO_0000010

position:30049:1
position: 30049
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:32022:1
position: 32022
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:30049-32022:1:exon

CE_RS00215
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 196164
locus tag: CE_RS00215
old locus tag: CE3P027
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003860212.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: cation-translocating P-type ATPase
translation: MTSACGCEPSAPMTEEDEHTPWWRDRAILLPVASGLTLLLGLILEWFIPGAGLMATTLFWVSLLLGASQFVPGALKGLFTSRRLGIGLLMTISATGAVLLGFIEEAAALAFLYSIAEALEDKAMDKARSGLRALLTLIPSTATIVAAHGGARTVQVEDLVPGDILRLAAGERLATDGVVRSGHSSLDVSAITGESIPVEVGPGDAVLAGSINTSGALEVKATAAGTDNSLTTVVKLVEQAQNDKGRRARIADRLARPLVPGVLILAILVAAIGSLLGDPGVWIERALVVLVAASPCALAISVPVTVVSAIGAASKFGVVIKSGAAFERLGGIRHLALDKTGTLTRNRPTVTEVLTTGGVNRAEVLDWAAALEAHSTHPLAAAITAAALHPPVAQQVSEAAGQGITGVITGTRIAVGSPRWLSPGPLATEVESLEEQGMTVVIVHRDGQPVGAVGVRDELRPEAPEVIQSLAAEGFGITMLTGDNTRTATALAVEAGIQDVRAQLRPEDKARAVADLHERGPVAMIGDGINDAPALASADIGIAMGARGSDAAIESADVAFTGDDLRLIPRALHHARRGRAIINQNIILSLAIIIVLLPLAITGVLGLAAVVLVHEVAEVIVIANGLRAARTRHPDLNPVKTATITADEDAHGKTRVY
SIO_010081: CE_RS00215
subclass of: SO_0000673
so part of: CE_RS00215
location: 30049..32022
location: region:30049-32022:1
so has part: feature:30049-32022:1:exon

WP_173362553.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:30049-32022:1:exon

CE_RS00220
type: Gene
subclass of: SO_0000704
RO_0002162: 196164
locus tag: CE_RS00220
old locus tag: CE3P028
so part of: sequence
location: 32087..33127
location: region:32087-33127:1
so has part: feature:32087-33127:1:exon
subclass of: SO_0000010

position:32087:1
position: 32087
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:33127:1
position: 33127
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:32087-33127:1:exon

CE_RS00220
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 196164
locus tag: CE_RS00220
old locus tag: CE3P028
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006841230.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: SURF1 family protein
translation: MAVSSTRERRYERAAQKKGWRTFLRPGWVFGVLAIIAFSYFSFTFLAPWQLSRDGAIVERNDQIEAAFEVEPVPAEEVFDAQGSIEPEEEWARVILEGHYLPEDEVLMRNRPVDSSPAFHALTPFQLNSGEVILVNRGFQPPFEGGVPPMDTPPTGEQSILGHARFAEQTPMSPPIEDQGYRQVYGINTEQIAEVTGTNLAQDYVQLAEGQAGEINAIPVPMLDRGSHLSYAFQWIAFGIMAPLGLGYFIWAELKERRRVRREEAELSVDATSSQQTGAPQDGDTDSGTMGTLRTTHPDNDTPGPAPTGTTTSASSGARSRMLHDRYGDSRPDHSRKFATRRRERF
SIO_010081: CE_RS00220
subclass of: SO_0000673
so part of: CE_RS00220
location: 32087..33127
location: region:32087-33127:1
so has part: feature:32087-33127:1:exon

WP_006770490.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:32087-33127:1:exon

CE_RS00225
type: Gene
subclass of: SO_0000704
RO_0002162: 196164
locus tag: CE_RS00225
old locus tag: CE3P029
so part of: sequence
location: 33251..35338
location: region:33251-35338:1
so has part: feature:33251-35338:1:exon
subclass of: SO_0000010

position:33251:1
position: 33251
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:35338:1
position: 35338
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:33251-35338:1:exon

CE_RS00225
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 196164
locus tag: CE_RS00225
old locus tag: CE3P029
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006841231.1
GO function: GO:0042625 - ATPase-coupled ion transmembrane transporter activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: heavy metal translocating P-type ATPase
translation: MSTPDHGHDPGQPHAPNGSPTTLTPTAPTTPTGDHAHGSARWELGFSIAAGVTYAGGMIAQFALGLPMVGWPLAFFLATYFFGGFFTIRTAISSTLRGKFEVDFLMLVAAVGAALIGRWAEGAVLLFLFSLGHALEEYALSRASKSIEALAELAPRHALVRRGDTEPVEVPVEELVVGDIVVIRPNSHIPSDGFVISGMSAVDQSAVTGESIPVEKEPVADPQRTMHTIDTLPAANRVFAGTVNGSGVLEIEVTATAADSTLSKVVELVRTADQAASPTQQFIDRFQRWYVPAVILGVIATLLVSMFVFAQPFSDAFYLAMTVLVAASPCALAIATPAAVLAGVARAARAGVLVKGGAPLETLGRVKAIAFDKTGTLTWGAPRVTSLAPANDTSEAELIPTLVAVESLSDHPLAAAIVRDLAPRVPETERLVATDLSALTGRGITATIDGERVEVGNLRMFDEQQLKLPPSLAEAYTKARDSGQTLMVVRRGDRFLGVVGVMDASRNESAQVLSMLRDTGVGHLVMISGDNQRVADAVGREVGVDTAIGELLPEDKVTHITGLAKTYHPIAMVGDGVNDAPAMARADVGIAMGAAGSTVALETCDIALMSDDLGRVPFAVRLSRATGQIIRQNLIASLAVVVVLIIATFLGLNIGAVVLIHEGSTLIVVANALRLLNFQKGKEHAGIDHEDKPTH
SIO_010081: CE_RS00225
subclass of: SO_0000673
so part of: CE_RS00225
location: 33251..35338
location: region:33251-35338:1
so has part: feature:33251-35338:1:exon

WP_006770491.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:33251-35338:1:exon

CE_RS00230
type: Gene
subclass of: SO_0000704
RO_0002162: 196164
locus tag: CE_RS00230
old locus tag: CE3P030
so part of: sequence
location: 35409..36119
location: region:35409-36119:1
so has part: feature:35409-36119:1:exon
subclass of: SO_0000010

position:35409:1
position: 35409
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:36119:1
position: 36119
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:35409-36119:1:exon

CE_RS00230
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 196164
locus tag: CE_RS00230
old locus tag: CE3P030
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006770492.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS6-like element ISCef5 family transposase
translation: MGIFSGRHFPREIILWAVRWYCRYGLSYRDLEEMMTERGVPVDHSTIYRWVQKYAPELDKQTRWYRQVPDWQARSWRVDETYIRVGGKWCYLYRAITAGGHTLDFYLSPKRNVAAAKRFLAKTLRSNTITGSPRVINTDKAPSLARAIAELKSEGIYPQTVEHRQVKYLNNVIEGDHGRLKRILGPKGAFKNRTSAYRTLKGMEAMHSLRKGQGAMFAYGQPNPDAVIVSRVFEAA
SIO_010081: CE_RS00230
subclass of: SO_0000673
so part of: CE_RS00230
location: 35409..36119
location: region:35409-36119:1
so has part: feature:35409-36119:1:exon

WP_006770492.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:35409-36119:1:exon

CE_RS00235
type: Gene
subclass of: SO_0000704
RO_0002162: 196164
locus tag: CE_RS00235
old locus tag: CE3P031
so part of: sequence
location: complement(36287..37414)
location: region:36287-37414:-1
so has part: feature:36287-37414:-1:exon
subclass of: SO_0000010

position:36287:-1
position: 36287
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:37414:-1
position: 37414
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:36287-37414:-1:exon

CE_RS00235
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 196164
locus tag: CE_RS00235
old locus tag: CE3P031
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006770493.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MVRIGTLLDECGRPIDKVQIIHRGKNNTRIKRSTDYGRSWEATDQQVPTDTVLFDDGQRFAQHSRNPQHATYMGSFGEPGARLRIHRVYKHITKAKVYLGEKTWTPIQDILTSSILFDGGASAGWMIPSWVEKDTTDQGNNAPEVEEETATSVKPQPGGSTDKHLAMQSAAVAESSTPLLPPVASPRGQRFSYIRVSSTDQNLARQRDMIGAVDKEFVDEVSAKSRAGRPGLERCIDYLRDHDELYVASIDRLARSLVDLRSIIDQITAKGASVHFIKENLVFSKDSTDPRATLMLGILGSFAEFERAIIRERQAEGIALAKKAGKYKGRKRVLTPAQVEQAQARVEAGESKTTLAKDLGVSRATLYRALSAPEL
SIO_010081: CE_RS00235
subclass of: SO_0000673
so part of: CE_RS00235
location: complement(36287..37414)
location: region:36287-37414:-1
so has part: feature:36287-37414:-1:exon

WP_006770493.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:36287-37414:-1:exon

CE_RS14615
type: Gene
subclass of: SO_0000704
RO_0002162: 196164
locus tag: CE_RS14615
pseudo: true
so part of: sequence
location: complement(37629..38331)
location: region:37629-38331:-1
so has part: feature:37629-38331:-1:exon
subclass of: SO_0000010

position:37629:-1
position: 37629
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:38331:-1
position: 38331
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:37629-38331:-1:exon

CE_RS14615
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 196164
locus tag: CE_RS14615
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006770492.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: IS6 family transposase
SIO_010081: CE_RS14615
subclass of: SO_0000673
so part of: CE_RS14615
location: complement(37629..38331)
location: region:37629-38331:-1
so has part: feature:37629-38331:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:37629-38331:-1:exon

CE_RS15110
type: Gene
subclass of: SO_0000704
RO_0002162: 196164
locus tag: CE_RS15110
so part of: sequence
location: 39195..39674
location: region:39195-39674:1
so has part: feature:39195-39674:1:exon
subclass of: SO_0000010

position:39195:1
position: 39195
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:39674:1
position: 39674
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:39195-39674:1:exon

CE_RS15110
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 196164
locus tag: CE_RS15110
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MMRSEQEYKVDISGAGTQKVAKKKVLRQAVWTFITIATSLTSLGMTAGTTALLHSFFERSFARDGVGVPYEVCIAAIGIAFSLFILYCGFLLVAHWNKQKFARAVQAFIAVCVFVSLSSTAWFFSETGQFNIVSVICLSFVFLGGALGVAVAERIRLEV
SIO_010081: CE_RS15110
subclass of: SO_0000673
so part of: CE_RS15110
location: 39195..39674
location: region:39195-39674:1
so has part: feature:39195-39674:1:exon

WP_143758380.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:39195-39674:1:exon

CE_RS15405
type: Gene
subclass of: SO_0000704
RO_0002162: 196164
locus tag: CE_RS15405
so part of: sequence
location: complement(40736..41482)
location: region:40736-41482:-1
so has part: feature:40736-41482:-1:exon
subclass of: SO_0000010

position:40736:-1
position: 40736
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:41482:-1
position: 41482
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:40736-41482:-1:exon

CE_RS15405
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 196164
locus tag: CE_RS15405
inference: COORDINATES: protein motif:HMM:NF013540.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix transcriptional regulator
translation: MSNGKWLEAEPKETWLVANDNEHGKKWFGRTVQITRQDRGLSVAELASRVDLAEGTIRAIERGGRAPSEASGLRILAKLFTSDQWSKNHFGPNLHAVKDPETKAPVIVEFGAKVRGDNGSWSRDRTPEDDMSDRDNEILRKVEKNLLENPEKLQRLKGVFSGFNESVKTYVAHLNEPINDENLGKVTRRLPAITNLQADHLDKLLWLWGLINTGRASREVIDEVQRVDKILGSFFSEDELKEFSEDED
SIO_010081: CE_RS15405
subclass of: SO_0000673
so part of: CE_RS15405
location: complement(40736..41482)
location: region:40736-41482:-1
so has part: feature:40736-41482:-1:exon

WP_162096705.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:40736-41482:-1:exon

CE_RS00245
type: Gene
subclass of: SO_0000704
RO_0002162: 196164
locus tag: CE_RS00245
old locus tag: CE3P035
so part of: sequence
location: complement(42182..42721)
location: region:42182-42721:-1
so has part: feature:42182-42721:-1:exon
subclass of: SO_0000010

position:42182:-1
position: 42182
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:42721:-1
position: 42721
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:42182-42721:-1:exon

CE_RS00245
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 196164
locus tag: CE_RS00245
old locus tag: CE3P035
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006770499.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: GNAT family protein
translation: MTNDFTWPIPFAELSDGSLTLRGLKASDADDIYLCAIDDRMKKYTQVPYEYTREMALDFATRQTSHIVFALQCDEFGERYCGNIEARLVDASIPSVSIGYNTAPWARGRGLQARALELLMKHCFANGINRVEVRAAVDNSASRHVAEVAGCRFEGIMRHGENLHGKLQDLAVYAKLAAD
SIO_010081: CE_RS00245
subclass of: SO_0000673
so part of: CE_RS00245
location: complement(42182..42721)
location: region:42182-42721:-1
so has part: feature:42182-42721:-1:exon

WP_006770499.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:42182-42721:-1:exon

CE_RS00250
type: Gene
subclass of: SO_0000704
RO_0002162: 196164
locus tag: CE_RS00250
so part of: sequence
location: complement(42802..43026)
location: region:42802-43026:-1
so has part: feature:42802-43026:-1:exon
subclass of: SO_0000010

position:42802:-1
position: 42802
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:43026:-1
position: 43026
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:42802-43026:-1:exon

CE_RS00250
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 196164
locus tag: CE_RS00250
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTATIPSKATKDLILEGKREHVIASDWSQAYMQARMIVWLAEHGKVGVGAVDVAVEELWMSRWQMHRVLLTVCL
SIO_010081: CE_RS00250
subclass of: SO_0000673
so part of: CE_RS00250
location: complement(42802..43026)
location: region:42802-43026:-1
so has part: feature:42802-43026:-1:exon

WP_006770500.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:42802-43026:-1:exon

CE_RS00260
type: Gene
subclass of: SO_0000704
RO_0002162: 196164
locus tag: CE_RS00260
old locus tag: CE3P036
so part of: sequence
location: complement(43999..45252)
location: region:43999-45252:-1
so has part: feature:43999-45252:-1:exon
subclass of: SO_0000010

position:43999:-1
position: 43999
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:45252:-1
position: 45252
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:43999-45252:-1:exon

CE_RS00260
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 196164
locus tag: CE_RS00260
old locus tag: CE3P036
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011076155.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS256 family transposase
translation: MAASPYSIDPTTYLDELLAQASPDLMREMLQGFINQILSTQADQVCGADYATVSQDRVNTRNGYRHRDFDTRVGTVDVAVPKLRTGSFFPDWLLERRTRAERALTTVIATCYLKGVSTRRMNDLVASLGINNLSKSQVSEMAKDLDVMVEEFRTRPLDTGPYLYVSCDALTMKVREGGRVVKTSVLLATGVNAEGYRELLGMQVATSESVASWTGFFRDLKARGLKEVYLVTSDAHLGIQHAIGEVLPNASWQRCRTHFSKNLSGMVSKTQWPTLSAMFHTIFQQPDAESVWAQARDVVDFCQEKFPDVADYLEEALDELLAFTQCPKSVWTKVWSNNPTERLNREIRRRTDVVGIFPNRDAVVRLVGAVLAEQHDDWIQQKRYMSLTSLEQTRAMMTANIIDSDDITSEIIRKDVA
SIO_010081: CE_RS00260
subclass of: SO_0000673
so part of: CE_RS00260
location: complement(43999..45252)
location: region:43999-45252:-1
so has part: feature:43999-45252:-1:exon

WP_006770452.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:43999-45252:-1:exon

CE_RS15120
type: Gene
subclass of: SO_0000704
RO_0002162: 196164
locus tag: CE_RS15120
pseudo: true
so part of: sequence
location: <45377..46501
location: region:45377-46501:1
so has part: feature:45377-46501:1:exon
subclass of: SO_0000010

position:45377:1
position: 45377
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:46501:1
position: 46501
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:45377-46501:1:exon

CE_RS15120
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 196164
locus tag: CE_RS15120
inference: COORDINATES: similar to AA sequence:RefSeq:WP_086558201.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: IS3 family transposase
SIO_010081: CE_RS15120
subclass of: SO_0000673
so part of: CE_RS15120
location: <45377..46501
location: region:45377-46501:1
so has part: feature:45377-46501:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:45377-46501:1:exon

CE_RS00270
type: Gene
subclass of: SO_0000704
RO_0002162: 196164
locus tag: CE_RS00270
old locus tag: CE3P039
so part of: sequence
location: 46513..46716
location: region:46513-46716:1
so has part: feature:46513-46716:1:exon
subclass of: SO_0000010

position:46513:1
position: 46513
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:46716:1
position: 46716
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:46513-46716:1:exon

CE_RS00270
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 196164
locus tag: CE_RS00270
old locus tag: CE3P039
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006770455.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSTKRGAGPISIQTIANNLGINCNILQAALKNTARARTDLTAEIPLLNYFGGSRGMVLGGTLTGQVS
SIO_010081: CE_RS00270
subclass of: SO_0000673
so part of: CE_RS00270
location: 46513..46716
location: region:46513-46716:1
so has part: feature:46513-46716:1:exon

WP_231844051.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:46513-46716:1:exon

CE_RS00275
type: Gene
subclass of: SO_0000704
RO_0002162: 196164
locus tag: CE_RS00275
old locus tag: CE3P040
pseudo: true
so part of: sequence
location: 46883..47787
location: region:46883-47787:1
so has part: feature:46883-47787:1:exon
subclass of: SO_0000010

position:46883:1
position: 46883
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:47787:1
position: 47787
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:46883-47787:1:exon

CE_RS00275
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 196164
locus tag: CE_RS00275
old locus tag: CE3P040
inference: COORDINATES: similar to AA sequence:RefSeq:WP_076612292.1
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: IS982-like element ISCef3 family transposase
SIO_010081: CE_RS00275
subclass of: SO_0000673
so part of: CE_RS00275
location: 46883..47787
location: region:46883-47787:1
so has part: feature:46883-47787:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:46883-47787:1:exon