Corynebacterium efficiens YS-314 plasmid pCE3, complete sequence.
Bacteria; Actinomycetota; Actinomycetes; Mycobacteriales; Corynebacteriaceae; Corynebacterium.
The entire sequence of plasmid maintained by Corynebacterium efficiens YS-314
Director-General of Biotechnology Center.
Submitted (17-MAY-2002) Contact:Director-General of Biotechnology Center National Institute of Technology and Evaluation, Biotechnology Center; Nishihara 2-49-10, Shibuya-ku, Tokyo 151-0066, Japan
REFSEQ INFORMATION: The reference sequence is identical to\nAP005226.1.\nKawarabayasi, Y is officially affiliated with the National\nInstitute of Advanced Industrial Science and Technology, Tsukuba,\nIbaraki, 305-8566 Japan\nThe other authers are at the National Institute of Technology and\nEvaluation, Shibuya-ku, Tokyo, 151-0066 Japan\nHomology analysis is performed by Smith-Waterman algorithm against\nSwiss_Prot release 40.0; and PIR-Protein release 70.0.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/24/2022 02:19:47\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,949\nCDSs (total) :: 2,875\nGenes (coding) :: 2,826\nCDSs (with protein) :: 2,826\nGenes (RNA) :: 74\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 56\nncRNAs :: 3\nPseudo Genes (total) :: 49\nCDSs (without protein) :: 49\nPseudo Genes (ambiguous residues) :: 0 of 49\nPseudo Genes (frameshifted) :: 27 of 49\nPseudo Genes (incomplete) :: 31 of 49\nPseudo Genes (internal stop) :: 5 of 49\nPseudo Genes (multiple problems) :: 12 of 49\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Corynebacterium efficiens
large-sized plasmid DNA in Corynebacterium efficiens YS-314
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_076611184.1
GO:0004803 - transposase activity [Evidence IEA]
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011075355.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014307745.1
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006770461.1
COORDINATES: similar to AA sequence:RefSeq:WP_006770462.1
GO:0000155 - phosphorelay sensor kinase activity [Evidence IEA]; GO:0046983 - protein dimerization activity [Evidence IEA]
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013474031.1
COORDINATES: similar to AA sequence:RefSeq:WP_006770465.1
COORDINATES: similar to AA sequence:RefSeq:WP_006770466.1
toxin-antitoxin system HicB family antitoxin
COORDINATES: protein motif:HMM:NF015076.2
COORDINATES: protein motif:HMM:NF025696.2
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
winged helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF016362.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0004519 - endonuclease activity [Evidence IEA]
GO:0009307 - DNA restriction-modification system [Evidence IEA]
COORDINATES: protein motif:HMM:NF020332.2
COORDINATES: similar to AA sequence:RefSeq:WP_006770478.1
COORDINATES: protein motif:HMM:NF024949.2
helix-turn-helix transcriptional regulator
COORDINATES: protein motif:HMM:NF019313.2
COORDINATES: similar to AA sequence:RefSeq:WP_011897899.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015381820.1
COORDINATES: similar to AA sequence:RefSeq:WP_006770492.1
IS6-like element IS1628 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_006770471.1
COORDINATES: similar to AA sequence:RefSeq:WP_006770480.1
COORDINATES: protein motif:HMM:NF016876.2
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_006770482.1
vitamin K epoxide reductase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_015453104.1
COORDINATES: similar to AA sequence:RefSeq:WP_015402255.1
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_006841217.1
COORDINATES: similar to AA sequence:RefSeq:WP_003847987.1
COORDINATES: similar to AA sequence:RefSeq:WP_003860216.1
GO:0042597 - periplasmic space [Evidence IEA]
GO:0005507 - copper ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003847982.1
COORDINATES: similar to AA sequence:RefSeq:WP_003860212.1
COORDINATES: similar to AA sequence:RefSeq:WP_006841230.1
COORDINATES: similar to AA sequence:RefSeq:WP_006841231.1
GO:0042625 - ATPase-coupled ion transmembrane transporter activity [Evidence IEA]
IS6-like element ISCef5 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_006770493.1
COORDINATES: protein motif:HMM:NF013540.2
COORDINATES: similar to AA sequence:RefSeq:WP_006770499.1
COORDINATES: similar to AA sequence:RefSeq:WP_011076155.1
COORDINATES: similar to AA sequence:RefSeq:WP_086558201.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006770455.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612292.1
IS982-like element ISCef3 family transposase