Corynebacterium efficiens YS-314 plasmid pCE2, complete sequence.
Bacteria; Actinomycetota; Actinomycetes; Mycobacteriales; Corynebacteriaceae; Corynebacterium.
The entire sequence of plasmid maintained by Corynebacterium efficiens YS-314
Director-General of Biotechnology Center.
Submitted (17-MAY-2002) Contact:Director-General of Biotechnology Center National Institute of Technology and Evaluation, Biotechnology Center; Nishihara 2-49-10, Shibuya-ku, Tokyo 151-0066, Japan
REFSEQ INFORMATION: The reference sequence is identical to\nAP005225.1.\nKawarabayasi, Y is officially affiliated with the National\nInstitute of Advanced Industrial Science and Technology, Tsukuba,\nIbaraki, 305-8566 Japan\nThe other authers are at the National Institute of Technology and\nEvaluation, Shibuya-ku, Tokyo, 151-0066 Japan\nHomology analysis is performed by Smith-Waterman algorithm against\nSwiss_Prot release 40.0; and PIR-Protein release 70.0.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/24/2022 02:19:47\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,949\nCDSs (total) :: 2,875\nGenes (coding) :: 2,826\nCDSs (with protein) :: 2,826\nGenes (RNA) :: 74\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 56\nncRNAs :: 3\nPseudo Genes (total) :: 49\nCDSs (without protein) :: 49\nPseudo Genes (ambiguous residues) :: 0 of 49\nPseudo Genes (frameshifted) :: 27 of 49\nPseudo Genes (incomplete) :: 31 of 49\nPseudo Genes (internal stop) :: 5 of 49\nPseudo Genes (multiple problems) :: 12 of 49\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Corynebacterium efficiens
middle-sized plasmid DNA in Corynebacterium efficiens YS-314
COORDINATES: protein motif:HMM:NF037202.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006822069.1
COORDINATES: protein motif:HMM:NF020332.2
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_006770522.1
COORDINATES: similar to AA sequence:RefSeq:WP_006770523.1
COORDINATES: similar to AA sequence:RefSeq:WP_011069214.1
COORDINATES: similar to AA sequence:RefSeq:WP_011076155.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006770505.1
COORDINATES: similar to AA sequence:RefSeq:WP_011069213.1
IS1380-like element ISCef7 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_006770511.1
COORDINATES: protein motif:HMM:NF037930.2
COORDINATES: similar to AA sequence:RefSeq:WP_006770514.1
COORDINATES: similar to AA sequence:RefSeq:WP_011069210.1
COORDINATES: protein motif:HMM:NF014442.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011074783.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS4-like element ISCef4 family transposase