Corynebacterium efficiens YS-314 plasmid pCE2, complete sequence.
type: Entry
definition: Corynebacterium efficiens YS-314 plasmid pCE2, complete sequence.
sequence version: NC_004319.1
sequence date: 2022-12-24
sequence: sequence
division: CON
label: NC_004319.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMD00061103
keyword: RefSeq
source: Corynebacterium efficiens YS-314
organism: Corynebacterium efficiens YS-314
taxonomy: Bacteria; Actinomycetota; Actinomycetes; Mycobacteriales; Corynebacteriaceae; Corynebacterium.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nAP005225.1.\nKawarabayasi, Y is officially affiliated with the National\nInstitute of Advanced Industrial Science and Technology, Tsukuba,\nIbaraki, 305-8566 Japan\nThe other authers are at the National Institute of Technology and\nEvaluation, Shibuya-ku, Tokyo, 151-0066 Japan\nHomology analysis is performed by Smith-Waterman algorithm against\nSwiss_Prot release 40.0; and PIR-Protein release 70.0.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/24/2022 02:19:47\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,949\nCDSs (total) :: 2,875\nGenes (coding) :: 2,826\nCDSs (with protein) :: 2,826\nGenes (RNA) :: 74\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 56\nncRNAs :: 3\nPseudo Genes (total) :: 49\nCDSs (without protein) :: 49\nPseudo Genes (ambiguous residues) :: 0 of 49\nPseudo Genes (frameshifted) :: 27 of 49\nPseudo Genes (incomplete) :: 31 of 49\nPseudo Genes (internal stop) :: 5 of 49\nPseudo Genes (multiple problems) :: 12 of 49\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 23743
topology: circular
so has quality: SO_0000988
location: 1..23743
location: region:1-23743:1
RO_0002162: 196164

NC_004319
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMD00061103
type: BioSample
SIO_000068: biosample

1
title: The entire sequence of plasmid maintained by Corynebacterium efficiens YS-314
author: Kawarabayasi, Y.
author: Yamazaki, J.
author: Hino, Y.
author: Kikuchi, H.
journal: Published Only in Database (2002)

2
title: Direct Submission
author: Kawarabayasi, Y.
author: Yamazaki, J.
author: Hino, Y.
author: Kikuchi, H.
author: Director-General of Biotechnology Center.
journal: Submitted (17-MAY-2002) Contact:Director-General of Biotechnology Center National Institute of Technology and Evaluation, Biotechnology Center; Nishihara 2-49-10, Shibuya-ku, Tokyo 151-0066, Japan

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:23743:1
position: 23743
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-23743:1:source
so part of: sequence
organism: Corynebacterium efficiens YS-314
mol type: genomic DNA
strain: YS-314
type material: type strain of Corynebacterium efficiens
plasmid: pCE2
note: middle-sized plasmid DNA in Corynebacterium efficiens YS-314

196164
type: Taxonomy
SIO_000068: taxonomy

CE_RS00005
type: Gene
subclass of: SO_0000704
RO_0002162: 196164
locus tag: CE_RS00005
old locus tag: CE2P001
so part of: sequence
location: 208..1872
location: region:208-1872:1
so has part: feature:208-1872:1:exon
subclass of: SO_0000010

position:208:1
position: 208
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1872:1
position: 1872
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:208-1872:1:exon

CE_RS00005
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 196164
locus tag: CE_RS00005
old locus tag: CE2P001
inference: COORDINATES: protein motif:HMM:NF037202.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MYVYFWRWAIWKAFQQAPEEKAIISFITASSWLDGPAFVGLRKLAVDTANDIWVLDLGGEGRGARKEENVFDIQSPVAIVTLVKSGKASRAAKIFYRRIRGTRQEKFLQLDEIKRLHADDGWIEIAAPNGEKFIPETTSELWQQLPLLADLFPWQQPGIMYNRAWPVAPSPEVLKERWKFLLEDTDADSRAERYVTGNSGRNIYTKVGSLEPLADLPVDAEPQPIVRMGWRSFDQQWTFDDPRLAKTDSPALWQSLSDKQVFLVSPWTARISNGPAATVAVGVPDKHYYCNRGGKDVIPLYRDQECEQPNVTAGLREKLEDIMGLEVTPEDFLAYCYALIAHGGYSEMFHDPLDSSPVRIPITRDLQRFTQAVEMGYELLWLQTFGQRFTSDARPLGRVPRIDGLFWLESVNTLPQDMKEISYDAETHQLHIADGVISGVLPEVWTFEVSGMKVLDKWLGARTRKGIGRAAGKSATPLDRIRPTEWEDEWNDELLDLLRMLTRTVELGPQQMQLLEEIVQGELITADQLPSPTDAERKVPKTIKRDYGQTSITF
SIO_010081: CE_RS00005
subclass of: SO_0000673
so part of: CE_RS00005
location: 208..1872
location: region:208-1872:1
so has part: feature:208-1872:1:exon

WP_011069208.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:208-1872:1:exon

CE_RS00010
type: Gene
subclass of: SO_0000704
RO_0002162: 196164
locus tag: CE_RS00010
so part of: sequence
location: 2029..2295
location: region:2029-2295:1
so has part: feature:2029-2295:1:exon
subclass of: SO_0000010

position:2029:1
position: 2029
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2295:1
position: 2295
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2029-2295:1:exon

CE_RS00010
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 196164
locus tag: CE_RS00010
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006822069.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSIPDERLITMKVIKDVLAAHGVPVDDPNDATLSGSEHAQAIIVTALVEQWDRLDGSQQRSIVEALEASTVVTEEAEKWVRDRIRPAE
SIO_010081: CE_RS00010
subclass of: SO_0000673
so part of: CE_RS00010
location: 2029..2295
location: region:2029-2295:1
so has part: feature:2029-2295:1:exon

WP_006770520.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2029-2295:1:exon

CE_RS00015
type: Gene
subclass of: SO_0000704
RO_0002162: 196164
locus tag: CE_RS00015
old locus tag: CE2P002
so part of: sequence
location: 2550..6014
location: region:2550-6014:1
so has part: feature:2550-6014:1:exon
subclass of: SO_0000010

position:2550:1
position: 2550
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6014:1
position: 6014
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2550-6014:1:exon

CE_RS00015
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 196164
locus tag: CE_RS00015
old locus tag: CE2P002
inference: COORDINATES: protein motif:HMM:NF020332.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MobF family relaxase
translation: MRGKKKKTTWDICTIVLLPVRARGFGWIWEVDVVLTIAKLGAHSVSYYDSTVAEGIGPDNYYSEAGSAPAQVWSRSDRVAECAAFLGVEQGQSLDGDQVKKWFNHTTAPSGNRLGQVMREDGVRGYDLTFSAPKSVSVLWGLSGRDEVRQVVDEAHAMAVARALDYLETHASYTRRRDENKTLIVDKTVGLSGVKYEHRTSRAGDPHVHSHVLLANRQLCPDGQVRSVDGKSLYHEARAAGMLYQAVLREELTRQLGVEWGEVTKGQADIKGLNDPAVLTAFSTRTTEIGQWEAENALTTNYQLQRVAQKKTRQTKNVDAVLSDLETQWAQQRAAQQVAQFAAGLGAGATEEKKNLPTPEAVLTEVIAERSTFTRADVVEKCAEMIPVGTLSPDEILGFVEATATHALESVALSVTPDRAREVDNTQREGSQRFTTDAVIQEVNKGIDLATTKTHNAVSADSIVPVEGTLSPAQAEAMAAVVSSDFLASVVVAPAGAGKTSSLKAARQAWEHAGKTVIGLAPTGKAADVMVGEHVAHESSTIARALYGTEDLAPAQVAARLGWNRDTVVVVDEAGMVATPDVVRLLEITRAAQAKIVLVGDPHQYAAVKARSGMLATLAYELPDAVELTEVFRQRDVAEREASIQLRSGDKDSIKRAAHWYMLQGRLEAGSTTAMLDDALAGWTSDTAAGKDSLLVAATGEQVQALNAGAQKIRADRGELYLSEARELSTGQWLHAGDVLLTRKNDYDLLTSAGDVVRNGQRWRVDQLHGDGSISATRLDDTQATATIPASYLKESGQLGYASTGHSAQGATVDVARVVAGAGQVDRASVYVPLTRGREGNYLYLTESMPGDTDTGHGGVTPTKRREGAEYARDLLIAAAARDGADQTPHQVWGTARADWALTRLAASGEFINYSPFTGTRMGEVMAEREAQRAERFSEFFTLTQIPPKQKSALPSEPDVSEKCATEVNASPQDEVKRYQHRAGEYAAALEQVRAQQAQAQAQLDAMAGEKTQLESALRELEQKKRQVTAESQGRGFFAKMIKRSEDERRLDQLEAALVAGRGEVEKFMPGYRQVEAVVSDLGVQAHKLAVQEKQARDQARYYLGLAAMEDPVSSVGLSEALNKPSQKRFRSHPPQSQSQALQYHRDQDQGLGR
SIO_010081: CE_RS00015
subclass of: SO_0000673
so part of: CE_RS00015
location: 2550..6014
location: region:2550-6014:1
so has part: feature:2550-6014:1:exon

WP_011069209.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2550-6014:1:exon

CE_RS15525
type: Gene
subclass of: SO_0000704
RO_0002162: 196164
locus tag: CE_RS15525
so part of: sequence
location: 6716..6961
location: region:6716-6961:1
so has part: feature:6716-6961:1:exon
subclass of: SO_0000010

position:6716:1
position: 6716
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6961:1
position: 6961
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6716-6961:1:exon

CE_RS15525
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 196164
locus tag: CE_RS15525
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTFENPTLDVLRGARDSITSDCKTTKIMLEGLVAAYEAGGGKREDSFDVDTLIRQLVGIIADLELRIFNLEEKIKGSDFSA
SIO_010081: CE_RS15525
subclass of: SO_0000673
so part of: CE_RS15525
location: 6716..6961
location: region:6716-6961:1
so has part: feature:6716-6961:1:exon

WP_155808226.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6716-6961:1:exon

CE_RS00020
type: Gene
subclass of: SO_0000704
RO_0002162: 196164
locus tag: CE_RS00020
old locus tag: CE2P003
so part of: sequence
location: 7257..7844
location: region:7257-7844:1
so has part: feature:7257-7844:1:exon
subclass of: SO_0000010

position:7257:1
position: 7257
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7844:1
position: 7844
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7257-7844:1:exon

CE_RS00020
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 196164
locus tag: CE_RS00020
old locus tag: CE2P003
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006770522.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family protein
translation: MIISAVNAKGGVGKTTTTIFVATELARRGHQVRVIDLDRQGSALDWAERAEEHGDPLPFEVEVSIPRQLPRIAGRLTDGEIIVIDAPPGDETAIEAAIEVSDFVILPTRATAADLTRVWEIREALEDTPHAVLLTFVRRGTSAPEVTREILDAEKLPRFSTEIPLREDMHAAYGYTPIEMHGYDTVTTEMMEQMQ
SIO_010081: CE_RS00020
subclass of: SO_0000673
so part of: CE_RS00020
location: 7257..7844
location: region:7257-7844:1
so has part: feature:7257-7844:1:exon

WP_006770522.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7257-7844:1:exon

CE_RS00025
type: Gene
subclass of: SO_0000704
RO_0002162: 196164
locus tag: CE_RS00025
old locus tag: CE2P004
so part of: sequence
location: 7841..8113
location: region:7841-8113:1
so has part: feature:7841-8113:1:exon
subclass of: SO_0000010

position:7841:1
position: 7841
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8113:1
position: 8113
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7841-8113:1:exon

CE_RS00025
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 196164
locus tag: CE_RS00025
old locus tag: CE2P004
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006770523.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid partition protein ParG
translation: MTTRARVADQAGPRKKTTTPVTKAPAKKTTRKAAVKKAFQQPSTRDFVKKMTVEIDQDAHAELKMIAARDGVTIREIISDLIDGYVKKHR
SIO_010081: CE_RS00025
subclass of: SO_0000673
so part of: CE_RS00025
location: 7841..8113
location: region:7841-8113:1
so has part: feature:7841-8113:1:exon

WP_006770523.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7841-8113:1:exon

CE_RS00030
type: Gene
subclass of: SO_0000704
RO_0002162: 196164
locus tag: CE_RS00030
so part of: sequence
location: 8418..9866
location: region:8418-9866:1
so has part: feature:8418-9866:1:exon
subclass of: SO_0000010

position:8418:1
position: 8418
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9866:1
position: 9866
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8418-9866:1:exon

CE_RS00030
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 196164
locus tag: CE_RS00030
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011069214.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication initiation protein
translation: MSLVNSTTSGTTRHTQTTDLYGGLDDTPASGLDREALLAHLGRKVLHGSRGRDFASAYLTTKNGTRAPRMYRVDSKALGKCEYVQLTNKQYASVLVVDIDLPGDAGGHPINLPEQVKQKFSQLIAHYLGPAWVGINPVNGKCQAIWLIDPVYADASGQSRAMTLLAAATHDLGQWLGHDSHFSHRFSRSPFYTGDSPTAYRWYRQHHRVYRLGDLLAGVRAMTGQESYAKPRQQFSSGRELINAVKARREEAERFKALSKDVEAELAGQLDQYDPELIQGVRVLWIREGRAARDETAFRHALKTGHRLRQAGQRMTDAAIIDAYEHAYTVAQEVGADGRTPELPPMKDRQTMARRVRGYVTTSKGEAYGSSATGRATSAERKALATMGRRGGKKAAERWKDPNSDYATDLRTKLQGANERRAVTGRVTARQIANFFDDTFIQTGEYPSIPQAMNELGVSRPTVSRALKTAGIQLPRGRKKKQ
SIO_010081: CE_RS00030
subclass of: SO_0000673
so part of: CE_RS00030
location: 8418..9866
location: region:8418-9866:1
so has part: feature:8418-9866:1:exon

WP_049783595.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8418-9866:1:exon

CE_RS00035
type: Gene
subclass of: SO_0000704
RO_0002162: 196164
locus tag: CE_RS00035
old locus tag: CE2P006
so part of: sequence
location: 10402..11658
location: region:10402-11658:1
so has part: feature:10402-11658:1:exon
subclass of: SO_0000010

position:10402:1
position: 10402
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11658:1
position: 11658
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10402-11658:1:exon

CE_RS00035
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 196164
locus tag: CE_RS00035
old locus tag: CE2P006
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011076155.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS256 family transposase
translation: MAAGPYSIDPTTYLDELLAQASPDLMREMLQGFINQILSTQADQVCGADYATVSESRTNVRNGYRHRDFDTRVGTVDVAVPKLRTGSFFPDWLLERRTRAERALTTVIATCYLKGVSTRRMNDLVATLGINSLSKSQVSDMAKDLDVMVEEFRTRPLDTGPYLYVSCDALTMKVREGGRVVKTSVLLATGVNSEGYRELLGMQVATSESVASWTGFFRDLKARGLNEVYLVTSDAHLGIQHAIGEVLPNASWQRCRTHFSKNLYGMVSKTQWPTLSAMFHTIFQQPDAQSVWGQAREVVAFCEQKFPDVADYLEEALDELLAFTNAPKSVWTKVWSNNPTERLNREIRRRTDVVGIFPNRDAVVRLVGAVLAEQHDDWIQQKRYMSLTSLEQTRAMMTANIIDADDAAASEVMRREVA
SIO_010081: CE_RS00035
subclass of: SO_0000673
so part of: CE_RS00035
location: 10402..11658
location: region:10402-11658:1
so has part: feature:10402-11658:1:exon

WP_011069211.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10402-11658:1:exon

CE_RS14550
type: Gene
subclass of: SO_0000704
RO_0002162: 196164
locus tag: CE_RS14550
so part of: sequence
location: 12055..12861
location: region:12055-12861:1
so has part: feature:12055-12861:1:exon
subclass of: SO_0000010

position:12055:1
position: 12055
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12861:1
position: 12861
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12055-12861:1:exon

CE_RS14550
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 196164
locus tag: CE_RS14550
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006770505.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSPVAQAQAERDVISEEKDAYVQGFHQSDDVTPLVTSCEENSNSALTNYQSGGDFETDRDIVNSLSPLVVDLFPQSEGQLDYFSVTTPDENNQRIIFAGFERQSISGHGTVFVDENLSVVSSHYGTVEDTESGHVRVTAYINGEVDKTVTLDKEKSGTGSDEFLEMIAGSEELSVPNPSDQGFQEGSKFTLAQASGYRGWDGFIECIKNDGSVPGFIAGAIGSGCGFLGRYHPVAGAGCAVGVSGVYAAVVYYCALSAMNIQRWQILR
SIO_010081: CE_RS14550
subclass of: SO_0000673
so part of: CE_RS14550
location: 12055..12861
location: region:12055-12861:1
so has part: feature:12055-12861:1:exon

WP_231295189.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12055-12861:1:exon

CE_RS15090
type: Gene
subclass of: SO_0000704
RO_0002162: 196164
locus tag: CE_RS15090
so part of: sequence
location: 13757..14047
location: region:13757-14047:1
so has part: feature:13757-14047:1:exon
subclass of: SO_0000010

position:13757:1
position: 13757
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14047:1
position: 14047
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13757-14047:1:exon

CE_RS15090
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 196164
locus tag: CE_RS15090
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTSTLPATIDRATVHRNLDEFKAFWLNRITDWRERGETATEKKYAQQFWSELFSCFGINASRMDLFEQDAHRSSTGGSGYIDLFWPGVVIGEAKSH
SIO_010081: CE_RS15090
subclass of: SO_0000673
so part of: CE_RS15090
location: 13757..14047
location: region:13757-14047:1
so has part: feature:13757-14047:1:exon

WP_006770507.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13757-14047:1:exon

CE_RS14555
type: Gene
subclass of: SO_0000704
RO_0002162: 196164
locus tag: CE_RS14555
so part of: sequence
location: 14028..14879
location: region:14028-14879:1
so has part: feature:14028-14879:1:exon
subclass of: SO_0000010

position:14028:1
position: 14028
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14879:1
position: 14879
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14028-14879:1:exon

CE_RS14555
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 196164
locus tag: CE_RS14555
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKRNPTESMPGDTDTGHGGVTPTVRRKGAEYARDLLIAAAARDGADQTPHQVWGTARADWALTRLAASGEFINYSPFTGTRMGDIMAEREAQRAERFSEFFTLTQIPPRKKQTLTPQPESPGKSAVQVGSSPRNPVREAEKAVTVLEEQRRVVAQQYRQIGEHLGQVQGQEHQICQQLEQITRQITQAQQARDGRGWLAKMLKPNEGAQQIEQWSKQQAGLERERVQVTQQREGLERDLAQVSQQYQDIDGQYQRAQLYRDGVKAEQIAERASKPGFTDVTRI
SIO_010081: CE_RS14555
subclass of: SO_0000673
so part of: CE_RS14555
location: 14028..14879
location: region:14028-14879:1
so has part: feature:14028-14879:1:exon

WP_143758374.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14028-14879:1:exon

CE_RS00050
type: Gene
subclass of: SO_0000704
RO_0002162: 196164
locus tag: CE_RS00050
old locus tag: CE2P010
so part of: sequence
location: 14970..16382
location: region:14970-16382:1
so has part: feature:14970-16382:1:exon
subclass of: SO_0000010

position:14970:1
position: 14970
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16382:1
position: 16382
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14970-16382:1:exon

CE_RS00050
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 196164
locus tag: CE_RS00050
old locus tag: CE2P010
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011069213.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS1380-like element ISCef7 family transposase
translation: MQVSHTPAALSISFDDPTLVSAAGLAPTMRLADNAGLSTLAQHQLTVAGDKGANAGAKITSLIAGMVAGADSINDMDLLRHGGMNRLFTRIYAPSTLGSFLRAFTFGHVRQLDAVASRFLINLAVQAPALVPAPAATSGYVFVDVDDTIIEVHGHQKQGAGFGYSGIRGLNALLATVTTTESAPVVVAQRLRRGSCGSPRGAGRLIADAITTTRRLPGLQHQKILVRADSAFYGSPSIHAALTAGADVSVTARMTRNIRQAITTIPDTSWETIEYTDALFDEDTQTWISSAEVAEVPFTAFASKPEVDQVPGRLVVRRIPELNPKKNVDQPGLFDLHRFHAVFTTADPALLDTVAADKTHRQHAVIEQVNADLKNSALAHMPSGKFTANAAWLVCAVMAFNLTRAAGVVAAGALARATTATIRHQIIAVAARVVRRSRRLVLHLPEGWRWQAQWRRLFDHGHSPPVVVSS
SIO_010081: CE_RS00050
subclass of: SO_0000673
so part of: CE_RS00050
location: 14970..16382
location: region:14970-16382:1
so has part: feature:14970-16382:1:exon

WP_011069213.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14970-16382:1:exon

CE_RS00055
type: Gene
subclass of: SO_0000704
RO_0002162: 196164
locus tag: CE_RS00055
old locus tag: CE2P011
so part of: sequence
location: 16770..17354
location: region:16770-17354:1
so has part: feature:16770-17354:1:exon
subclass of: SO_0000010

position:16770:1
position: 16770
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17354:1
position: 17354
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16770-17354:1:exon

CE_RS00055
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 196164
locus tag: CE_RS00055
old locus tag: CE2P011
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006770511.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family protein
translation: MRISFVHTKGGVGKTTSSILLATAAIRRGIDVEFFDADPQASASRWAEVARNREDPLEFEVMPASAKKLRAHPASTGWQIVDTPPGNAAEIQAAIDTADLVIVPTHPSPIDLDRVWPTLETINHRMVGVLLIGVQERRRLYQDTREIFESQGVSTFYNTVPEREDIKAMFGTNPRNIYSFDEICTEILEIEEMN
SIO_010081: CE_RS00055
subclass of: SO_0000673
so part of: CE_RS00055
location: 16770..17354
location: region:16770-17354:1
so has part: feature:16770-17354:1:exon

WP_006770511.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16770-17354:1:exon

CE_RS00060
type: Gene
subclass of: SO_0000704
RO_0002162: 196164
locus tag: CE_RS00060
so part of: sequence
location: 17355..17627
location: region:17355-17627:1
so has part: feature:17355-17627:1:exon
subclass of: SO_0000010

position:17355:1
position: 17355
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17627:1
position: 17627
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17355-17627:1:exon

CE_RS00060
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 196164
locus tag: CE_RS00060
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTPPRNRLADTIRQPAKKTASTPVKDTLRNDEEEKTKLTRRTTVYLSEQTWKDLKISAVEDEKNVSQIIENLVEGYLMRRERRIAKAQEK
SIO_010081: CE_RS00060
subclass of: SO_0000673
so part of: CE_RS00060
location: 17355..17627
location: region:17355-17627:1
so has part: feature:17355-17627:1:exon

WP_006770512.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17355-17627:1:exon

CE_RS15095
type: Gene
subclass of: SO_0000704
RO_0002162: 196164
locus tag: CE_RS15095
so part of: sequence
location: complement(17689..18444)
location: region:17689-18444:-1
so has part: feature:17689-18444:-1:exon
subclass of: SO_0000010

position:17689:-1
position: 17689
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18444:-1
position: 18444
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17689-18444:-1:exon

CE_RS15095
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 196164
locus tag: CE_RS15095
inference: COORDINATES: protein motif:HMM:NF037930.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MLQKVIESLADSETSLEEGLRQLLVVAYRTQSDPLKEWLQGELNGYDREDSLPHYRQNFRGRIQLTFVGWGPTYKTVYFISSDIPEELRWWEEKGLAFPQSVTELEALSSGPEDPGIKMPNSWVARYQVLEEEGKATSYTGMTLEEAQIIFPRTIVLALLGNIRNQSLQMALELEAVSPDVGNLSEMTEEQTEAAKQVINVFISTMTGDMNTTQDGIISQSSAGGTVNNSLQYNDNAAESSNIQGDNNTMN
SIO_010081: CE_RS15095
subclass of: SO_0000673
so part of: CE_RS15095
location: complement(17689..18444)
location: region:17689-18444:-1
so has part: feature:17689-18444:-1:exon

WP_143758375.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17689-18444:-1:exon

CE_RS14560
type: Gene
subclass of: SO_0000704
RO_0002162: 196164
locus tag: CE_RS14560
so part of: sequence
location: complement(18450..18734)
location: region:18450-18734:-1
so has part: feature:18450-18734:-1:exon
subclass of: SO_0000010

position:18450:-1
position: 18450
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18734:-1
position: 18734
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18450-18734:-1:exon

CE_RS14560
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 196164
locus tag: CE_RS14560
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006770514.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNHQHNVNNAPAVNVQGDNNVINQQNQSQLVDDIVSTLREHGETNHADQLEKEKQDNGPKTALTKGMSWVANKAFAPPVLAALAPYIAQAAGMV
SIO_010081: CE_RS14560
subclass of: SO_0000673
so part of: CE_RS14560
location: complement(18450..18734)
location: region:18450-18734:-1
so has part: feature:18450-18734:-1:exon

WP_006770514.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18450-18734:-1:exon

CE_RS00070
type: Gene
subclass of: SO_0000704
RO_0002162: 196164
locus tag: CE_RS00070
so part of: sequence
location: 19081..20538
location: region:19081-20538:1
so has part: feature:19081-20538:1:exon
subclass of: SO_0000010

position:19081:1
position: 19081
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20538:1
position: 20538
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19081-20538:1:exon

CE_RS00070
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 196164
locus tag: CE_RS00070
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011069210.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication initiation protein
translation: MSLVNSTTSGTTRHTQTTDLYGGLDDTPASGLDREALLAHLGRKVLHGSRGRDFASAYLTTKDGGRAPRMYRVDSEALGKCEYVQLTNKQYASVLVVDIDLPGDAGGHPVNLPEQVKQKFSQLIAHYLGPAWVGINPVNGKCQAIWLIDPVYADASGQSRAMTLLAAATHDLGQWLGHDSHFSHRFSRSPFYTGDSPTAYRWYRQHHRVYRLADLLAGVRAMTGQESYAKPRQQFSSGRELIMAVKARREDAERFKALSQDVEAELAGHLDQYDPELIQGVRVLWIRTGRAARDETAFRHALKTGHRLRQAGQRMTDAAIIDAYEHAYTVAQEVGADGRTPELPPMKDRQTMARRVRGYVTTSKGEAYGSSATGRATSAERKALATMGRRGGKKAAERWKDPDSEYAQAERDKLQKINVRRSQQGKTRRLRIAAWFLEGVSETGEWPTINEAVQAFDVSERTVRNAVKDAGIELPRGRKKKPATP
SIO_010081: CE_RS00070
subclass of: SO_0000673
so part of: CE_RS00070
location: 19081..20538
location: region:19081-20538:1
so has part: feature:19081-20538:1:exon

WP_011069214.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19081-20538:1:exon

CE_RS00075
type: Gene
subclass of: SO_0000704
RO_0002162: 196164
locus tag: CE_RS00075
old locus tag: CE2P014
so part of: sequence
location: 20839..22503
location: region:20839-22503:1
so has part: feature:20839-22503:1:exon
subclass of: SO_0000010

position:20839:1
position: 20839
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22503:1
position: 22503
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20839-22503:1:exon

CE_RS00075
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 196164
locus tag: CE_RS00075
old locus tag: CE2P014
inference: COORDINATES: protein motif:HMM:NF014442.2
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO process: GO:0006306 - DNA methylation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: N-6 DNA methylase
translation: MNSYNTFLNTPQVKVIMNLQVVSALAQKYSDQARSANSLSIAAEPEAQLTVPLANFFSAFAAEAGLGELGLIREAQLKGVRPDFAATINQRQCGWVELKAPGHTLMGEKWRGREKGQWELLAQLDSLVVTNGEAAALYVNGVLGAECDLPFDDPASWDPEPFKDLLQKFILAKATPIKRVSQLADRLAPLARFLRIRLDEGLENNLPAVLQAKEAWDSTVHETTSTGQFSSDVAQVVAYSMAIAGMSGQADLNNDGVITLKEAKDTLALGHRNVLAAALGPIIGIPELTEYIAPELGAIIRLISGMDVPAIQSAKDSRGEPWLWFYEDFLAKYDPEARKQAGVYYTPTSVVQCQVRMVDDVLRNRFGQTLGFGSKSVVTLDPATGSGTYPLAVIDQAVETAHIERGPAGTQQVARNLTKNILAFEILPGPYSVAHLRVGQRLAQAKNQLVQFDDIGVYLTDTLEDPSTHIRPGLFGDAKILAEAADKARRVKAEQNITVAIGNPPYDRVTSDSGGWVTAGNDHHEPLFDDVIKPNAVKLVGVVLCYASTWTDTT
SIO_010081: CE_RS00075
subclass of: SO_0000673
so part of: CE_RS00075
location: 20839..22503
location: region:20839-22503:1
so has part: feature:20839-22503:1:exon

WP_011069215.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20839-22503:1:exon

CE_RS00080
type: Gene
subclass of: SO_0000704
RO_0002162: 196164
locus tag: CE_RS00080
old locus tag: CE2P015
pseudo: true
so part of: sequence
location: 22475..23690
location: region:22475-23690:1
so has part: feature:22475-23690:1:exon
subclass of: SO_0000010

position:22475:1
position: 22475
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:23690:1
position: 23690
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22475-23690:1:exon

CE_RS00080
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 196164
locus tag: CE_RS00080
old locus tag: CE2P015
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011074783.1
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: IS4-like element ISCef4 family transposase
SIO_010081: CE_RS00080
subclass of: SO_0000673
so part of: CE_RS00080
location: 22475..23690
location: region:22475-23690:1
so has part: feature:22475-23690:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:22475-23690:1:exon