Haematobacter massiliensis strain OT1 plasmid pOT1-2, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodobacterales; Paracoccaceae; Haematobacter.
The first complete genome sequence of Haematobacter massiliensis OT1 isolated from human skin
Submitted (28-JAN-2019) Bio Health Science, Changwon National University, Changwondaero, Changwon, Gyeongnam 51140, Korea, Republic of
REFSEQ INFORMATION: The reference sequence is identical to\nCP035512.1.\nBacteria and source DNA available from Prof. Kyoung Lee.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\nThis genome has a base modification file available.\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. 2.3\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 233.0x\nSequencing Technology :: PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/12/2023 03:47:07\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,015\nCDSs (total) :: 3,954\nGenes (coding) :: 3,873\nCDSs (with protein) :: 3,873\nGenes (RNA) :: 61\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 48\nncRNAs :: 4\nPseudo Genes (total) :: 81\nCDSs (without protein) :: 81\nPseudo Genes (ambiguous residues) :: 0 of 81\nPseudo Genes (frameshifted) :: 32 of 81\nPseudo Genes (incomplete) :: 55 of 81\nPseudo Genes (internal stop) :: 7 of 81\nPseudo Genes (multiple problems) :: 13 of 81\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_011331263.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_009804006.1
COORDINATES: protein motif:HMM:NF040974.1
COORDINATES: similar to AA sequence:RefSeq:WP_011909670.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012091235.1
COORDINATES: similar to AA sequence:RefSeq:WP_007694827.1
GO:0008783 - agmatinase activity [Evidence IEA]
GO:0008295 - spermidine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008884986.1
COORDINATES: nucleotide motif:Rfam:14.4:RF00177
Derived by automated computational analysis using gene prediction method: cmsearch.
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
COORDINATES: nucleotide motif:Rfam:14.4:RF02541
COORDINATES: nucleotide motif:Rfam:14.4:RF00001
COORDINATES: similar to AA sequence:RefSeq:WP_012817655.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010335688.1
COORDINATES: similar to AA sequence:RefSeq:WP_007424913.1
COORDINATES: similar to AA sequence:RefSeq:WP_010335690.1
COORDINATES: similar to AA sequence:RefSeq:WP_011090895.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010335691.1
COORDINATES: similar to AA sequence:RefSeq:WP_010335692.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010335693.1
COORDINATES: similar to AA sequence:RefSeq:WP_009450573.1
nucleotidyl transferase AbiEii/AbiGii toxin family protein
COORDINATES: similar to AA sequence:RefSeq:WP_009450572.1
COORDINATES: similar to AA sequence:RefSeq:WP_009450571.1
zincin-like metallopeptidase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009450570.1
COORDINATES: similar to AA sequence:RefSeq:WP_020818539.1
ParB N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013368624.1
COORDINATES: similar to AA sequence:RefSeq:WP_020042524.1
COORDINATES: similar to AA sequence:RefSeq:WP_020818541.1
COORDINATES: similar to AA sequence:RefSeq:WP_015740134.1
COORDINATES: similar to AA sequence:RefSeq:WP_009450564.1
antitoxin of toxin-antitoxin stability system
COORDINATES: similar to AA sequence:RefSeq:WP_015740136.1
COORDINATES: similar to AA sequence:RefSeq:WP_020818545.1
COORDINATES: similar to AA sequence:RefSeq:WP_010336136.1
COORDINATES: similar to AA sequence:RefSeq:WP_009450559.1
COORDINATES: similar to AA sequence:RefSeq:WP_010336143.1
COORDINATES: similar to AA sequence:RefSeq:WP_010336144.1
COORDINATES: similar to AA sequence:RefSeq:WP_015740146.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_010336146.1
COORDINATES: similar to AA sequence:RefSeq:WP_009450554.1
COORDINATES: protein motif:HMM:NF040446.1
COORDINATES: similar to AA sequence:RefSeq:WP_010336148.1
COORDINATES: similar to AA sequence:RefSeq:WP_010336149.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009450550.1
COORDINATES: similar to AA sequence:RefSeq:WP_013651057.1
COORDINATES: similar to AA sequence:RefSeq:WP_013368642.1
COORDINATES: similar to AA sequence:RefSeq:WP_009450547.1
COORDINATES: similar to AA sequence:RefSeq:WP_010336154.1
COORDINATES: similar to AA sequence:RefSeq:WP_013368398.1
COORDINATES: similar to AA sequence:RefSeq:WP_013368399.1
GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA]
lytic transglycosylase domain-containing protein
COORDINATES: protein motif:HMM:NF023271.2
COORDINATES: similar to AA sequence:RefSeq:WP_010336158.1
COORDINATES: similar to AA sequence:RefSeq:WP_015740163.1
COORDINATES: similar to AA sequence:RefSeq:WP_010336160.1
COORDINATES: similar to AA sequence:RefSeq:WP_018426318.1
COORDINATES: similar to AA sequence:RefSeq:WP_009450537.1
VirB3 family type IV secretion system protein
COORDINATES: similar to AA sequence:RefSeq:WP_015740166.1
COORDINATES: similar to AA sequence:RefSeq:WP_009450535.1
GO:0009291 - unidirectional conjugation [Evidence IEA]
P-type conjugative transfer protein TrbJ
COORDINATES: similar to AA sequence:RefSeq:WP_015740167.1
GO:0009292 - horizontal gene transfer [Evidence IEA]
putative entry exclusion protein TrbK-alt
COORDINATES: similar to AA sequence:RefSeq:WP_010395136.1
P-type conjugative transfer protein TrbL
COORDINATES: similar to AA sequence:RefSeq:WP_019404641.1
COORDINATES: similar to AA sequence:RefSeq:WP_015740170.1
P-type conjugative transfer protein TrbG
COORDINATES: similar to AA sequence:RefSeq:WP_015740171.1
COORDINATES: similar to AA sequence:RefSeq:WP_015740172.1
COORDINATES: similar to AA sequence:RefSeq:WP_012112707.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_010336172.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010336173.1
COORDINATES: similar to AA sequence:RefSeq:WP_010336174.1
COORDINATES: similar to AA sequence:RefSeq:WP_015740179.1
COORDINATES: similar to AA sequence:RefSeq:WP_010336176.1
COORDINATES: similar to AA sequence:RefSeq:WP_015740181.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
BREX-1 system adenine-specific DNA-methyltransferase PglX
COORDINATES: similar to AA sequence:RefSeq:WP_017998948.1
GO:0003824 - catalytic activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010336179.1
GO:0004176 - ATP-dependent peptidase activity [Evidence IEA]
GO:0030163 - protein catabolic process [Evidence IEA]
BREX system Lon protease-like protein BrxL
COORDINATES: similar to AA sequence:RefSeq:WP_010336180.1
COORDINATES: similar to AA sequence:RefSeq:WP_010336181.1
COORDINATES: similar to AA sequence:RefSeq:WP_010336182.1
COORDINATES: similar to AA sequence:RefSeq:WP_010336183.1
COORDINATES: similar to AA sequence:RefSeq:WP_010336184.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_016845106.1
reverse transcriptase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013441932.1
COORDINATES: similar to AA sequence:RefSeq:WP_014241477.1
COORDINATES: similar to AA sequence:RefSeq:WP_020084970.1
COORDINATES: protein motif:HMM:NF019149.2
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007284108.1
trifunctional transcriptional activator/DNA repair protein Ada/methylated-DNA--[protein]-cysteine S-methyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_006206704.1
LysR substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006206715.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020812708.1
COORDINATES: similar to AA sequence:RefSeq:WP_018445061.1
hydantoinase B/oxoprolinase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006206711.1
hydantoinase/oxoprolinase family protein
COORDINATES: protein motif:HMM:NF024846.2
COORDINATES: similar to AA sequence:RefSeq:WP_015929313.1
COORDINATES: similar to AA sequence:RefSeq:WP_018633924.1
GO:0005254 - chloride channel activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF015000.2
GO:0008081 - phosphoric diester hydrolase activity [Evidence IEA]
GO:0006629 - lipid metabolic process [Evidence IEA]
glycerophosphodiester phosphodiesterase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013066836.1
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0050661 - NADP binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006936947.1
GO:0004400 - histidinol-phosphate transaminase activity [Evidence IEA]; GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
GO:0000105 - histidine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009735915.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_018497544.1
COORDINATES: similar to AA sequence:RefSeq:WP_009467771.1
GO:0004497 - monooxygenase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010137828.1
COORDINATES: similar to AA sequence:RefSeq:WP_005858886.1
GO:0047617 - acyl-CoA hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007349459.1
COORDINATES: similar to AA sequence:RefSeq:WP_010138662.1
COORDINATES: similar to AA sequence:RefSeq:WP_014439290.1
COORDINATES: similar to AA sequence:RefSeq:WP_008228544.1
COORDINATES: similar to AA sequence:RefSeq:WP_018404541.1
COORDINATES: protein motif:HMM:NF012711.2
class I adenylate-forming enzyme family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008229842.1
GO:0070403 - NAD+ binding [Evidence IEA]
GO:0006631 - fatty acid metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005848873.1
COORDINATES: similar to AA sequence:RefSeq:WP_009805603.1
GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007226830.1
COORDINATES: similar to AA sequence:RefSeq:WP_009808330.1
COORDINATES: similar to AA sequence:RefSeq:WP_010137827.1
GO:0003985 - acetyl-CoA C-acetyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012203325.1
COORDINATES: similar to AA sequence:RefSeq:WP_008334009.1
COORDINATES: similar to AA sequence:RefSeq:WP_006589381.1
GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0016657 - oxidoreductase activity, acting on NAD(P)H, nitrogenous group as acceptor [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010660819.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005849296.1
COORDINATES: similar to AA sequence:RefSeq:WP_019402771.1
COORDINATES: similar to AA sequence:RefSeq:WP_018701457.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017277387.1
COORDINATES: protein motif:HMM:NF013775.2
COORDINATES: similar to AA sequence:RefSeq:WP_007828615.1
aspartate aminotransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_019294914.1
COORDINATES: similar to AA sequence:RefSeq:WP_011727822.1
COORDINATES: similar to AA sequence:RefSeq:WP_011907817.1
GO:0043190 - ATP-binding cassette (ABC) transporter complex [Evidence IEA]; GO:0009897 - external side of plasma membrane [Evidence IEA]; GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]
GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]; GO:0005488 - binding [Evidence IEA]
GO:0042918 - alkanesulfonate transport [Evidence IEA]
aliphatic sulfonate ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_018182050.1
GO:0008726 - alkanesulfonate monooxygenase activity [Evidence IEA]; GO:0010181 - FMN binding [Evidence IEA]
GO:0006790 - sulfur compound metabolic process [Evidence IEA]
FMNH2-dependent alkanesulfonate monooxygenase
COORDINATES: similar to AA sequence:RefSeq:WP_008122005.1
COORDINATES: similar to AA sequence:RefSeq:WP_012653828.1
ATP-binding cassette domain-containing protein
COORDINATES: protein motif:HMM:NF012470.2
GO:0016791 - phosphatase activity [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_019171589.1
GO:0033573 - high-affinity iron permease complex [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]
GO:0005381 - iron ion transmembrane transporter activity [Evidence IEA]
GO:0034755 - iron ion transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011390348.1
COORDINATES: similar to AA sequence:RefSeq:WP_007158408.1
GO:0020037 - heme binding [Evidence IEA]; GO:0004601 - peroxidase activity [Evidence IEA]
GO:0033212 - iron import into cell [Evidence IEA]
iron uptake transporter deferrochelatase/peroxidase subunit
COORDINATES: similar to AA sequence:RefSeq:WP_013068764.1
COORDINATES: similar to AA sequence:RefSeq:WP_018237544.1
GO:0016787 - hydrolase activity [Evidence IEA]
gamma-glutamyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011750605.1
GO:0015293 - symporter activity [Evidence IEA]
bile acid:sodium symporter family protein
COORDINATES: protein motif:HMM:NF015431.2
hydrogen peroxide-inducible genes activator
COORDINATES: similar to AA sequence:RefSeq:WP_008235972.1
proton-conducting transporter membrane subunit
COORDINATES: similar to AA sequence:RefSeq:WP_008235974.1
COORDINATES: similar to AA sequence:RefSeq:WP_017068246.1
COORDINATES: similar to AA sequence:RefSeq:WP_018875775.1
GO:0008137 - NADH dehydrogenase (ubiquinone) activity [Evidence IEA]
GO:0042773 - ATP synthesis coupled electron transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF014012.2
COORDINATES: similar to AA sequence:RefSeq:WP_008235981.1
GO:0015075 - monoatomic ion transmembrane transporter activity [Evidence IEA]
GO:0034220 - monoatomic ion transmembrane transport [Evidence IEA]
monovalent cation/H+ antiporter complex subunit F
COORDINATES: similar to AA sequence:RefSeq:WP_019956352.1
GO:0051139 - metal cation:proton antiporter activity [Evidence IEA]
GO:0098662 - inorganic cation transmembrane transport [Evidence IEA]; GO:1902600 - proton transmembrane transport [Evidence IEA]
monovalent cation/H(+) antiporter subunit G
COORDINATES: similar to AA sequence:RefSeq:WP_008833880.1
COORDINATES: similar to AA sequence:RefSeq:WP_011470590.1
3-keto-5-aminohexanoate cleavage protein
COORDINATES: similar to AA sequence:RefSeq:WP_007006296.1
GO:0008977 - prephenate dehydrogenase (NAD+) activity [Evidence IEA]; GO:0004665 - prephenate dehydrogenase (NADP+) activity [Evidence IEA]
GO:0006571 - tyrosine biosynthetic process [Evidence IEA]
prephenate dehydrogenase/arogenate dehydrogenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006938211.1
NAD-dependent epimerase/dehydratase family protein
COORDINATES: protein motif:HMM:NF013884.2
GO:0016747 - acyltransferase activity, transferring groups other than amino-acyl groups [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019649526.1
COORDINATES: similar to AA sequence:RefSeq:WP_020090573.1
GO:0016757 - glycosyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF016800.2
GO:0009103 - lipopolysaccharide biosynthetic process [Evidence IEA]
GO:0005524 - ATP binding [Evidence IEA]; GO:0004715 - non-membrane spanning protein tyrosine kinase activity [Evidence IEA]; GO:0004713 - protein tyrosine kinase activity [Evidence IEA]
CpsD/CapB family tyrosine-protein kinase
COORDINATES: protein motif:HMM:NF014732.2
Wzz/FepE/Etk N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF026018.2
polysaccharide biosynthesis C-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF012744.2
COORDINATES: similar to AA sequence:RefSeq:WP_015750741.1
GO:0008483 - transaminase activity [Evidence IEA]
DegT/DnrJ/EryC1/StrS family aminotransferase
COORDINATES: similar to AA sequence:RefSeq:WP_012322363.1
COORDINATES: protein motif:HMM:NF024627.2
right-handed parallel beta-helix repeat-containing protein
COORDINATES: protein motif:HMM:NF025072.2
COORDINATES: protein motif:HMM:NF014606.2
GO:0015159 - polysaccharide transmembrane transporter activity [Evidence IEA]
GO:0015774 - polysaccharide transport [Evidence IEA]
polysaccharide biosynthesis/export family protein
COORDINATES: protein motif:HMM:NF012301.2
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008227192.1
MlaE family lipid ABC transporter permease subunit
COORDINATES: similar to AA sequence:RefSeq:WP_012178719.1
COORDINATES: protein motif:HMM:NF014523.2
COORDINATES: protein motif:HMM:NF015823.2
ABC-type transport auxiliary lipoprotein family protein
COORDINATES: similar to AA sequence:RefSeq:WP_009505070.1
GO:0009279 - cell outer membrane [Evidence IEA]
GO:0015288 - porin activity [Evidence IEA]
efflux transporter outer membrane subunit
COORDINATES: similar to AA sequence:RefSeq:WP_008236406.1
COORDINATES: similar to AA sequence:RefSeq:WP_008385807.1
COORDINATES: similar to AA sequence:RefSeq:WP_008382441.1
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
2Fe-2S iron-sulfur cluster-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_011432694.1
GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [Evidence IEA]
COORDINATES: protein motif:HMM:NF013714.2
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004989603.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0022857 - transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008967392.1
COORDINATES: similar to AA sequence:RefSeq:WP_004576255.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]
GO:0140359 - ABC-type transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016845556.1
bifunctional helix-turn-helix transcriptional regulator/GNAT family N-acetyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_007767762.1
GO:0004721 - phosphoprotein phosphatase activity [Evidence IEA]; GO:0004725 - protein tyrosine phosphatase activity [Evidence IEA]
GO:0006470 - protein dephosphorylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF014564.2
GO:0008410 - CoA-transferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012495086.1
carboxyl transferase domain-containing protein
COORDINATES: protein motif:HMM:NF012610.2
COORDINATES: similar to AA sequence:RefSeq:WP_013503740.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019197794.1
COORDINATES: similar to AA sequence:RefSeq:WP_018270428.1
COORDINATES: similar to AA sequence:RefSeq:WP_014992929.1
COORDINATES: similar to AA sequence:RefSeq:WP_018270430.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018311292.1
COORDINATES: similar to AA sequence:RefSeq:WP_008599907.1
COORDINATES: similar to AA sequence:RefSeq:WP_002965555.1
COORDINATES: similar to AA sequence:RefSeq:WP_008185792.1
COORDINATES: similar to AA sequence:RefSeq:WP_010339503.1
COORDINATES: similar to AA sequence:RefSeq:WP_018634207.1
COORDINATES: similar to AA sequence:RefSeq:WP_008967155.1
GO:0000166 - nucleotide binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003435364.1
amino acid ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_013209715.1
GO:0006865 - amino acid transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017454258.1
COORDINATES: similar to AA sequence:RefSeq:WP_015927615.1
COORDINATES: similar to AA sequence:RefSeq:WP_018644128.1
COORDINATES: similar to AA sequence:RefSeq:WP_013517883.1
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
GO:0009058 - biosynthetic process [Evidence IEA]
aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_014329425.1
COORDINATES: protein motif:HMM:NF021524.2
COORDINATES: similar to AA sequence:RefSeq:WP_013813200.1
COORDINATES: similar to AA sequence:RefSeq:WP_012091862.1
COORDINATES: similar to AA sequence:RefSeq:WP_007615773.1
COORDINATES: similar to AA sequence:RefSeq:WP_018062739.1
COORDINATES: similar to AA sequence:RefSeq:WP_006724917.1
COORDINATES: similar to AA sequence:RefSeq:WP_019004030.1
COORDINATES: similar to AA sequence:RefSeq:WP_009098775.1
COORDINATES: similar to AA sequence:RefSeq:WP_018916633.1
COORDINATES: similar to AA sequence:RefSeq:WP_007695061.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0016151 - nickel cation binding [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]; GO:0010045 - response to nickel cation [Evidence IEA]
nickel-responsive transcriptional regulator NikR
COORDINATES: similar to AA sequence:RefSeq:WP_018308059.1
COORDINATES: similar to AA sequence:RefSeq:WP_007002566.1
GO:0016811 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006938776.1
COORDINATES: similar to AA sequence:RefSeq:WP_007880114.1
GO:0016787 - hydrolase activity [Evidence IEA]; GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006469500.1
COORDINATES: similar to AA sequence:RefSeq:WP_006938781.1
COORDINATES: similar to AA sequence:RefSeq:WP_018322084.1
COORDINATES: similar to AA sequence:RefSeq:WP_006469503.1
COORDINATES: similar to AA sequence:RefSeq:WP_009210494.1
COORDINATES: similar to AA sequence:RefSeq:WP_006473198.1
COORDINATES: similar to AA sequence:RefSeq:WP_008885272.1
GO:0016746 - acyltransferase activity [Evidence IEA]; GO:0071972 - peptidoglycan L,D-transpeptidase activity [Evidence IEA]
GO:0018104 - peptidoglycan-protein cross-linking [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011045826.1
COORDINATES: similar to AA sequence:RefSeq:WP_017929844.1
COORDINATES: similar to AA sequence:RefSeq:WP_009816695.1
COORDINATES: similar to AA sequence:RefSeq:WP_020043411.1
COORDINATES: similar to AA sequence:RefSeq:WP_008281256.1
GO:0008641 - ubiquitin-like modifier activating enzyme activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005605915.1
GO:0004789 - thiamine-phosphate diphosphorylase activity [Evidence IEA]
GO:0009228 - thiamine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005979901.1
GO:1990107 - thiazole synthase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013963749.1
COORDINATES: similar to AA sequence:RefSeq:WP_006642599.1
COORDINATES: similar to AA sequence:RefSeq:WP_020043417.1
GO:0008902 - hydroxymethylpyrimidine kinase activity [Evidence IEA]; GO:0008972 - phosphomethylpyrimidine kinase activity [Evidence IEA]
bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase
COORDINATES: nucleotide motif:Rfam:14.4:RF00059
TPP riboswitch; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_017928131.1
COORDINATES: similar to AA sequence:RefSeq:WP_009505849.1
COORDINATES: similar to AA sequence:RefSeq:WP_007795977.1
COORDINATES: protein motif:HMM:NF024242.2
COORDINATES: protein motif:HMM:NF018172.2
GO:0042597 - periplasmic space [Evidence IEA]
GO:0030058 - amine dehydrogenase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF018942.2
GO:0030416 - methylamine metabolic process [Evidence IEA]
MauE/DoxX family redox-associated membrane protein
COORDINATES: similar to AA sequence:RefSeq:WP_015828562.1
GO:0016209 - antioxidant activity [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015828560.1
GO:0016638 - oxidoreductase activity, acting on the CH-NH2 group of donors [Evidence IEA]
GO:0009308 - amine metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF024834.2
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010139096.1
GO:0004418 - hydroxymethylbilane synthase activity [Evidence IEA]
GO:0006779 - porphyrin-containing compound biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019573118.1
COORDINATES: similar to AA sequence:RefSeq:WP_007004999.1
COORDINATES: similar to AA sequence:RefSeq:WP_007563160.1
COORDINATES: similar to AA sequence:RefSeq:WP_007563158.1
COORDINATES: similar to AA sequence:RefSeq:WP_007004995.1
3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006579331.1
COORDINATES: similar to AA sequence:RefSeq:WP_008613384.1
COORDINATES: similar to AA sequence:RefSeq:WP_011384981.1
COORDINATES: similar to AA sequence:RefSeq:WP_018991775.1
COORDINATES: similar to AA sequence:RefSeq:WP_017453875.1
GO:0015803 - branched-chain amino acid transport [Evidence IEA]
branched-chain amino acid ABC transporter permease
COORDINATES: similar to AA sequence:RefSeq:WP_011464871.1
COORDINATES: similar to AA sequence:RefSeq:WP_020702567.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188305.1
COORDINATES: similar to AA sequence:RefSeq:WP_011384987.1
COORDINATES: protein motif:HMM:TIGR02937.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]
sigma-70 family RNA polymerase sigma factor
COORDINATES: protein motif:HMM:NF016648.2
COORDINATES: protein motif:HMM:TIGR01783.1
GO:0019867 - outer membrane [Evidence IEA]
GO:0015343 - siderophore-iron transmembrane transporter activity [Evidence IEA]
GO:0015891 - siderophore transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF013648.2
COORDINATES: similar to AA sequence:RefSeq:WP_008365651.1
GO:0006826 - iron ion transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007003012.1
COORDINATES: protein motif:HMM:NF016818.2
COORDINATES: similar to AA sequence:RefSeq:WP_006164652.1
GO:0036361 - racemase activity, acting on amino acids and derivatives [Evidence IEA]
GO:0006807 - nitrogen compound metabolic process [Evidence IEA]
aspartate/glutamate racemase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_005855629.1
COORDINATES: similar to AA sequence:RefSeq:WP_005855631.1
COORDINATES: similar to AA sequence:RefSeq:WP_009504146.1
COORDINATES: similar to AA sequence:RefSeq:WP_012494459.1
COORDINATES: similar to AA sequence:RefSeq:WP_009504144.1
COORDINATES: similar to AA sequence:RefSeq:WP_020811857.1
NAD-dependent succinate-semialdehyde dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_020811856.1
GO:0030554 - adenyl nucleotide binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017793468.1
COORDINATES: similar to AA sequence:RefSeq:WP_013383226.1
COORDINATES: similar to AA sequence:RefSeq:WP_009459238.1
COORDINATES: similar to AA sequence:RefSeq:WP_011242069.1
COORDINATES: similar to AA sequence:RefSeq:WP_007879763.1
COORDINATES: similar to AA sequence:RefSeq:WP_006326002.1
COORDINATES: similar to AA sequence:RefSeq:WP_010393223.1
COORDINATES: similar to AA sequence:RefSeq:WP_012177068.1
GO:0005886 - plasma membrane [Evidence IEA]
GO:0008643 - carbohydrate transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008559161.1
sugar ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_008030411.1
COORDINATES: similar to AA sequence:RefSeq:WP_012042265.1
GO:0015205 - nucleobase transmembrane transporter activity [Evidence IEA]
nucleobase:cation symporter-2 family protein
COORDINATES: similar to AA sequence:RefSeq:WP_019564097.1
LysR family transcriptional regulator ArgP
COORDINATES: similar to AA sequence:RefSeq:WP_006390672.1
COORDINATES: similar to AA sequence:RefSeq:WP_010142408.1
GO:0046872 - metal ion binding [Evidence IEA]
GO:0030001 - metal ion transport [Evidence IEA]
metal ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_011747581.1
COORDINATES: similar to AA sequence:RefSeq:WP_010142406.1
COORDINATES: similar to AA sequence:RefSeq:WP_007068098.1
GO:0043190 - ATP-binding cassette (ABC) transporter complex [Evidence IEA]
GO:0030001 - metal ion transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014253007.1
COORDINATES: similar to AA sequence:RefSeq:WP_020008996.1
COORDINATES: similar to AA sequence:RefSeq:WP_006725471.1
COORDINATES: similar to AA sequence:RefSeq:WP_020008994.1
COORDINATES: similar to AA sequence:RefSeq:WP_010397469.1