Haematobacter massiliensis strain OT1 plasmid pOT1-9, complete sequence.
type: Entry
definition: Haematobacter massiliensis strain OT1 plasmid pOT1-9, complete sequence.
sequence version: NZ_CP035509.1
sequence date: 2023-04-12
sequence: sequence
division: CON
label: NZ_CP035509.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN10829711
keyword: RefSeq
source: Haematobacter massiliensis
organism: Haematobacter massiliensis
taxonomy: Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodobacterales; Paracoccaceae; Haematobacter.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP035509.1.\nBacteria and source DNA available from Prof. Kyoung Lee.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\nThis genome has a base modification file available.\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. 2.3\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 233.0x\nSequencing Technology :: PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/12/2023 03:47:07\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,015\nCDSs (total) :: 3,954\nGenes (coding) :: 3,873\nCDSs (with protein) :: 3,873\nGenes (RNA) :: 61\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 48\nncRNAs :: 4\nPseudo Genes (total) :: 81\nCDSs (without protein) :: 81\nPseudo Genes (ambiguous residues) :: 0 of 81\nPseudo Genes (frameshifted) :: 32 of 81\nPseudo Genes (incomplete) :: 55 of 81\nPseudo Genes (internal stop) :: 7 of 81\nPseudo Genes (multiple problems) :: 13 of 81\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 54639
topology: circular
so has quality: SO_0000988
location: 1..54639
location: region:1-54639:1
RO_0002162: 195105

NZ_CP035509
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN10829711
type: BioSample
SIO_000068: biosample

1
title: The first complete genome sequence of Haematobacter massiliensis OT1 isolated from human skin
author: Lee, K.
journal: Unpublished

2
title: Direct Submission
author: Lee, K.
journal: Submitted (28-JAN-2019) Bio Health Science, Changwon National University, Changwondaero, Changwon, Gyeongnam 51140, Korea, Republic of

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:54639:1
position: 54639
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-54639:1:source
so part of: sequence
organism: Haematobacter massiliensis
mol type: genomic DNA
strain: OT1
isolation source: human skin swab
culture collection: KCTC:62810
plasmid: pOT1-9
country: South Korea: Changwon
collection date: 2017-09-30

195105
type: Taxonomy
SIO_000068: taxonomy

HmaOT1_RS01400
type: Gene
subclass of: SO_0000704
RO_0002162: 195105
locus tag: HmaOT1_RS01400
old locus tag: HmaOT1_01390
so part of: sequence
location: complement(join(54454..54639,1..540))
location: region:1-54639:-1
so has part: feature:1-540:-1:exon
so has part: feature:54454-54639:-1:exon
subclass of: SO_0000010

position:1:-1
position: 1
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:54639:-1
position: 54639
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-540:-1:exon

position:540:-1
position: 540
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:54454-54639:-1:exon

position:54454:-1
position: 54454
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

HmaOT1_RS01400
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 195105
locus tag: HmaOT1_RS01400
old locus tag: HmaOT1_01390
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTDNEQNRTGDTQRPTEDLKDAARHEYEDARQRLSGHAERLKTEGASTIKTVVTDELDRRKAGVGAEFRSLAETLRNASKEQAAKAESGIGAAPSSLLGQGADVLESLSSELDGQSVSDLTRSVSAYARANPAIFIGGCILAGLAVGRLLTASEHKNADGSSNQSNPYRPGQYDDRRRDDNTQPPAYRAQRESGYTASQARDPGTEPPVFGTPGSTMREPSGASVTDTSPEALRREDKHGL
SIO_010081: HmaOT1_RS01400
subclass of: SO_0000673
so part of: HmaOT1_RS01400
location: complement(join(54454..54639,1..540))
location: region:1-54639:-1
so has part: feature:1-540:-1:exon
so has part: feature:54454-54639:-1:exon

WP_035715224.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1-540:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:54454-54639:-1:exon

HmaOT1_RS01405
type: Gene
subclass of: SO_0000704
RO_0002162: 195105
locus tag: HmaOT1_RS01405
old locus tag: HmaOT1_01395
so part of: sequence
location: 767..1624
location: region:767-1624:1
so has part: feature:767-1624:1:exon
subclass of: SO_0000010

position:767:1
position: 767
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1624:1
position: 1624
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:767-1624:1:exon

HmaOT1_RS01405
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 195105
locus tag: HmaOT1_RS01405
old locus tag: HmaOT1_01395
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015665385.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: SDR family oxidoreductase
translation: MIDYPTPPYPEQQQDMPGTTGAMTPRPDHGEESYAGSGRLAGLKAVITGGDSGIGRAVAIAYAREGVDILISYLNEHEDAKDTARLVEQAGRKAVLVPGDIKEAAHCRKIIDTAVNELGGLDILVNNAAHQATFDSVADIPDEEWELTFKVNIHAMFYLVKAALPHLSAGASIINTTSINADKPNPGLLAYATTKGAIQNFTGGLAQALAEQGIRVNCVAPGPIWTPLIPSTMPAEKVSKFGEQVPFKRAGQPAELAAAYVMLADPRSSYTSGATIAVTGGQPII
SIO_010081: HmaOT1_RS01405
subclass of: SO_0000673
so part of: HmaOT1_RS01405
location: 767..1624
location: region:767-1624:1
so has part: feature:767-1624:1:exon

WP_035715226.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:767-1624:1:exon

HmaOT1_RS01410
type: Gene
subclass of: SO_0000704
RO_0002162: 195105
locus tag: HmaOT1_RS01410
old locus tag: HmaOT1_01400
so part of: sequence
location: 1635..2804
location: region:1635-2804:1
so has part: feature:1635-2804:1:exon
subclass of: SO_0000010

position:1635:1
position: 1635
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2804:1
position: 2804
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1635-2804:1:exon

HmaOT1_RS01410
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 195105
locus tag: HmaOT1_RS01410
old locus tag: HmaOT1_01400
EC number: 1.1.1.-
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012760315.1
GO function: GO:0030554 - adenyl nucleotide binding [Evidence IEA]; GO:0004024 - alcohol dehydrogenase activity, zinc-dependent [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: zinc-dependent alcohol dehydrogenase
translation: MKALTWHGKSDMRYETVPDPQIEDAKDAIIKVTSCAICGSDLHIYDGVMACMEHGDVIGHETMGEVVEVGADTSKLKVGDRVVIPFTIACGECFFCQRGFFSGCERSNRDFDKAKKMWGNSPAGLFGYSHLLGGYSGGQAEYLRVPYADVGHIKVPSNLSDDQALFLSDIFPTGYMAAEFCDIKPGDTIAIWGCGPVGQMAIRSAFILGAERVIAIDTVPERLALAAAAGAEVLDFAEADIYDEIMARTEGRGADACIDAVGTEPDTTSGFMAVIDRIKVATFMGTDRPHVLRQAIMCCRNFGTVSIVGVYAGFLDKMPMGSAINRGLTFRMAQTPVQRYMPKLLGLIEEGRIDPSFVITHKGKLEDGPELYKTFRDKADGCIKVVLNP
SIO_010081: HmaOT1_RS01410
subclass of: SO_0000673
so part of: HmaOT1_RS01410
location: 1635..2804
location: region:1635-2804:1
so has part: feature:1635-2804:1:exon

WP_035715228.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1635-2804:1:exon

HmaOT1_RS01415
type: Gene
subclass of: SO_0000704
RO_0002162: 195105
locus tag: HmaOT1_RS01415
old locus tag: HmaOT1_01405
so part of: sequence
location: 2821..3129
location: region:2821-3129:1
so has part: feature:2821-3129:1:exon
subclass of: SO_0000010

position:2821:1
position: 2821
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3129:1
position: 3129
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2821-3129:1:exon

HmaOT1_RS01415
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 195105
locus tag: HmaOT1_RS01415
old locus tag: HmaOT1_01405
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018099542.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSEDKTKTVNAIFATREAADRAVEHLVQQHDLNRADVFVEAMGPENSAGTEESGGDASPAMGDDDRSDGALAGSIQISVDVTESEVAKVRKAFADTGERSPT
SIO_010081: HmaOT1_RS01415
subclass of: SO_0000673
so part of: HmaOT1_RS01415
location: 2821..3129
location: region:2821-3129:1
so has part: feature:2821-3129:1:exon

WP_035715231.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2821-3129:1:exon

HmaOT1_RS01420
type: Gene
subclass of: SO_0000704
RO_0002162: 195105
locus tag: HmaOT1_RS01420
old locus tag: HmaOT1_01410
so part of: sequence
location: complement(3327..3917)
location: region:3327-3917:-1
so has part: feature:3327-3917:-1:exon
subclass of: SO_0000010

position:3327:-1
position: 3327
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3917:-1
position: 3917
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3327-3917:-1:exon

HmaOT1_RS01420
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 195105
locus tag: HmaOT1_RS01420
old locus tag: HmaOT1_01410
inference: COORDINATES: protein motif:HMM:NF021516.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF2243 domain-containing protein
translation: MIMTDGVFHLAMFAALIIALWMLWRGDVRPERLAANTLIGFGSWHVFDAVLSHGVLGIHRIKDAAANPLLWDLGWVAAFGFVPIALGLLALRRPPPPMRGIRILLLMAAVGMGALNAVPIVEPKGPVIVAFAPNTSFASITRAAEAVGANLITTDASGGVWALDMPEDAEWWRLYLHGAVMVGRGPAAGCLAWTEA
SIO_010081: HmaOT1_RS01420
subclass of: SO_0000673
so part of: HmaOT1_RS01420
location: complement(3327..3917)
location: region:3327-3917:-1
so has part: feature:3327-3917:-1:exon

WP_131389356.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3327-3917:-1:exon

HmaOT1_RS01425
type: Gene
subclass of: SO_0000704
RO_0002162: 195105
locus tag: HmaOT1_RS01425
old locus tag: HmaOT1_01415
so part of: sequence
location: 4010..4942
location: region:4010-4942:1
so has part: feature:4010-4942:1:exon
subclass of: SO_0000010

position:4010:1
position: 4010
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4942:1
position: 4942
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4010-4942:1:exon

HmaOT1_RS01425
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 195105
locus tag: HmaOT1_RS01425
old locus tag: HmaOT1_01415
inference: COORDINATES: similar to AA sequence:RefSeq:WP_076611945.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS5 family transposase
translation: MSKPEAVRYRTTNWKSYNKALKRRGSLLIWLDKDMVWLPPKAGRPGRPPVFSDAAIQFCLMVKVLFGLPLRQTTGMVACILKMAGLDWPVPDFSTLSRRQGSLVVDIPHRRATGPLNLLVDSTGIKFLGDGEWLARKHGTHRRRQYRKVHLAMDTATGDIRAVEFTSSREGDSPVLPDLLDQIPADEQVGTVTGDGAFDTRRCHTAIVDRGGTAIIPIRKNGRLWKENCPAARARNDILRASKRFGRANWKHWSGYHVRSRIEAKMRCLKSFGERIASRDPDRQTAEIHIRIALMNRFNTLGTAETERVA
SIO_010081: HmaOT1_RS01425
subclass of: SO_0000673
so part of: HmaOT1_RS01425
location: 4010..4942
location: region:4010-4942:1
so has part: feature:4010-4942:1:exon

WP_131389358.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4010-4942:1:exon

HmaOT1_RS01430
type: Gene
subclass of: SO_0000704
RO_0002162: 195105
locus tag: HmaOT1_RS01430
old locus tag: HmaOT1_01420
pseudo: true
so part of: sequence
location: 5142..>5375
location: region:5142-5375:1
so has part: feature:5142-5375:1:exon
subclass of: SO_0000010

position:5142:1
position: 5142
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5375:1
position: 5375
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5142-5375:1:exon

HmaOT1_RS01430
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 195105
locus tag: HmaOT1_RS01430
old locus tag: HmaOT1_01420
inference: COORDINATES: similar to AA sequence:RefSeq:WP_076611945.1
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: transposase
SIO_010081: HmaOT1_RS01430
subclass of: SO_0000673
so part of: HmaOT1_RS01430
location: 5142..>5375
location: region:5142-5375:1
so has part: feature:5142-5375:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5142-5375:1:exon

HmaOT1_RS01435
type: Gene
subclass of: SO_0000704
RO_0002162: 195105
gene: istA
locus tag: HmaOT1_RS01435
old locus tag: HmaOT1_01425
so part of: sequence
location: 5542..7077
location: region:5542-7077:1
so has part: feature:5542-7077:1:exon
subclass of: SO_0000010

position:5542:1
position: 5542
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7077:1
position: 7077
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5542-7077:1:exon

HmaOT1_RS01435
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 195105
gene: istA
locus tag: HmaOT1_RS01435
old locus tag: HmaOT1_01425
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008840514.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS21 family transposase
translation: MRESHFVPGRHVTDQQTRLFMKLRQTHPIEVAAAKADFSRSTGFRIAQDPRLPSQKMQPRERRRPDPLETIFDAEVVPLLKEAPGLRPLAIFEEMLRRHPELSPGIRRTLERRIRSWRALHGAEQDVIFRQVHEPGRMGLSDFTDMSALGVTVGGHPLAHMLYHFRLPWSGFAHAHVILGGESFVALAEGLQNALWSAGGAPHQHRTDSLSAAFRNLDADTEADLTRRYDALCAHYRMAPTRNNRGVAHENGAIESGHGHLKAAIRDALLMRGSAEFAGLVDYRAFVDEVVGRRNAAQGKRIAAERAHLQALPTNRTTDFEEVIVTVSSTGGFTLRKVFYTVPSRLIGHRLRVRLYDDRLEVFMGGTLVMTLPRGRAHPDGRHDQVVNYRHVIHALRKKPMALLNLVYRDKLFPRPAYRRAFEALVAQLPEKMACKVTVELLALAHERGCERELGDEIEAVLTAGHLPDPVALRRQFGPDPQALPVVSVAQVGLDTYDALVAPTAWMGETA
SIO_010081: HmaOT1_RS01435
subclass of: SO_0000673
so part of: HmaOT1_RS01435
location: 5542..7077
location: region:5542-7077:1
so has part: feature:5542-7077:1:exon

WP_165496662.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5542-7077:1:exon

HmaOT1_RS01440
type: Gene
subclass of: SO_0000704
RO_0002162: 195105
gene: istB
locus tag: HmaOT1_RS01440
old locus tag: HmaOT1_01430
so part of: sequence
location: 7074..7967
location: region:7074-7967:1
so has part: feature:7074-7967:1:exon
subclass of: SO_0000010

position:7074:1
position: 7074
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7967:1
position: 7967
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7074-7967:1:exon

HmaOT1_RS01440
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 195105
gene: istB
locus tag: HmaOT1_RS01440
old locus tag: HmaOT1_01430
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003551146.1
GO function: GO:0005524 - ATP binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS21-like element helper ATPase IstB
translation: MTTVYSIDEVRLGIMLNELRLPTIKTLWPRFAETADREGWPAARFLAAIAEHELAERANRRIERHLAEAHLPPGKTLDSFAFEAVPMISKAQVTAMAAGDSWLAKGANVLMFGPPGGGKSHLAAAIGLALIENGWRVLFARTTDLVQKLQVARRELQLENAIAKLDKFDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQPFGEWNRVFPDPAMTLAAVDRLVHHATIFEMNVESYRRRSAMEAKRSRGRPAAFATINNTPQFVAERQSTSSQHLASDNQDDTLTDTAT
SIO_010081: HmaOT1_RS01440
subclass of: SO_0000673
so part of: HmaOT1_RS01440
location: 7074..7967
location: region:7074-7967:1
so has part: feature:7074-7967:1:exon

WP_088216957.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7074-7967:1:exon

HmaOT1_RS01445
type: Gene
subclass of: SO_0000704
RO_0002162: 195105
locus tag: HmaOT1_RS01445
old locus tag: HmaOT1_01435
so part of: sequence
location: 7852..8721
location: region:7852-8721:1
so has part: feature:7852-8721:1:exon
subclass of: SO_0000010

position:7852:1
position: 7852
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8721:1
position: 8721
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7852-8721:1:exon

HmaOT1_RS01445
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 195105
locus tag: HmaOT1_RS01445
old locus tag: HmaOT1_01435
inference: COORDINATES: similar to AA sequence:RefSeq:WP_076611948.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS5 family transposase
translation: MPSRQSTTPLSLSRSVNQHRASILPATIRMIPSRTPRRRISSRLTRASLPDCRAIVASILKMAGLDWPVPDFSTLSRRQGSLVVDIPHRRATGPLNLLVDSTGIKFLGDGEWLARKHGTHRRRQYRKVHLAMDTATGDIRAVEFTSSREGDSPVLPDLLDQIPADEQVGTVTGDGAFDTRRCHTAIVDRGGTAIIPIRKNGRLWKENCPAARARNDILRASKRFGRANWKHWSGYHVRSRIEAKMRCLKSFGERIASRDPDRQTAEIHIRIALMNRFNTLGTAETERVA
SIO_010081: HmaOT1_RS01445
subclass of: SO_0000673
so part of: HmaOT1_RS01445
location: 7852..8721
location: region:7852-8721:1
so has part: feature:7852-8721:1:exon

WP_131389361.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7852-8721:1:exon

HmaOT1_RS01450
type: Gene
subclass of: SO_0000704
RO_0002162: 195105
locus tag: HmaOT1_RS01450
old locus tag: HmaOT1_01440
so part of: sequence
location: 8857..9546
location: region:8857-9546:1
so has part: feature:8857-9546:1:exon
subclass of: SO_0000010

position:8857:1
position: 8857
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9546:1
position: 9546
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8857-9546:1:exon

HmaOT1_RS01450
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 195105
locus tag: HmaOT1_RS01450
old locus tag: HmaOT1_01440
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008874627.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ferritin-like domain-containing protein
translation: MATAKDSTKDKTTAAAAKKTARASGSKSPAASVETRQKRAQAVAAKSTNRKAAQAAAQDSKSLSDLFEHALGDIYYAEKKIYKSLPKMIKAADHPDLVAALTSHREETAGQIEKLEAIFELLGKRAKAEKCEAIDGILEEGESLLEDFGASVAADAAIIFSCQAIEHYEITRYGSMRAFAEALGLDEARQHIEDILAQETAADTQLTELAEDSVNAAATDYDEDEGAAA
SIO_010081: HmaOT1_RS01450
subclass of: SO_0000673
so part of: HmaOT1_RS01450
location: 8857..9546
location: region:8857-9546:1
so has part: feature:8857-9546:1:exon

WP_084684282.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8857-9546:1:exon

HmaOT1_RS01455
type: Gene
subclass of: SO_0000704
RO_0002162: 195105
locus tag: HmaOT1_RS01455
old locus tag: HmaOT1_01445
pseudo: true
so part of: sequence
location: 10019..11041
location: region:10019-11041:1
so has part: feature:10019-11041:1:exon
subclass of: SO_0000010

position:10019:1
position: 10019
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11041:1
position: 11041
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10019-11041:1:exon

HmaOT1_RS01455
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 195105
locus tag: HmaOT1_RS01455
old locus tag: HmaOT1_01445
inference: COORDINATES: similar to AA sequence:RefSeq:WP_076611590.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: IS3 family transposase
SIO_010081: HmaOT1_RS01455
subclass of: SO_0000673
so part of: HmaOT1_RS01455
location: 10019..11041
location: region:10019-11041:1
so has part: feature:10019-11041:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:10019-11041:1:exon

HmaOT1_RS01460
type: Gene
subclass of: SO_0000704
RO_0002162: 195105
locus tag: HmaOT1_RS01460
old locus tag: HmaOT1_01450
so part of: sequence
location: 11961..12989
location: region:11961-12989:1
so has part: feature:11961-12989:1:exon
subclass of: SO_0000010

position:11961:1
position: 11961
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12989:1
position: 12989
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11961-12989:1:exon

HmaOT1_RS01460
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 195105
locus tag: HmaOT1_RS01460
old locus tag: HmaOT1_01450
inference: COORDINATES: similar to AA sequence:RefSeq:WP_028714619.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS110 family transposase
translation: MSEIITVGLDLAKNVFQVHGADAAGGAVLRKKLRRTQVLGFFEALPPCVVAMEACGGAHYWGREIGKLGHEVRLIPPAYVKPFVKRQKNDAADAEAICEAAQRPTMRFVSVKSEETQGAAMVFRVRELLIRQRTQAINALRGHLAEFGQVVPQGAANASKLIAIVEDPESGLPAEATATLQVLIGSLAHLEAQIGRLDAEISRCAKENEVARRLMTVPGIGPLIATAIATLAPPPETFRKARDFAAWLGLVPRQHSTGGKQRLGATTKMGERSLRRLLIIGANSVIIKRHVHREAQPGTWLGNMLSRKPSMLVRVALANKMARIVWALMARGGVYQSPAVAA
SIO_010081: HmaOT1_RS01460
subclass of: SO_0000673
so part of: HmaOT1_RS01460
location: 11961..12989
location: region:11961-12989:1
so has part: feature:11961-12989:1:exon

WP_009803435.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11961-12989:1:exon

HmaOT1_RS01465
type: Gene
subclass of: SO_0000704
RO_0002162: 195105
locus tag: HmaOT1_RS01465
old locus tag: HmaOT1_01455
so part of: sequence
location: complement(13297..14229)
location: region:13297-14229:-1
so has part: feature:13297-14229:-1:exon
subclass of: SO_0000010

position:13297:-1
position: 13297
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14229:-1
position: 14229
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13297-14229:-1:exon

HmaOT1_RS01465
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 195105
locus tag: HmaOT1_RS01465
old locus tag: HmaOT1_01455
inference: COORDINATES: similar to AA sequence:RefSeq:WP_028710025.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS5-like element ISPko1 family transposase
translation: MSRPTPPTYRTRNWPAYNEALKRRGSLTIWFDPEMSWDAAPTGRRGRQQTYSDAAIQTCLSMKVLFGMALRQTTGFVESLLRLVGLDWAVPDFSTLSRRQKTLAVNIPYRGSKGPLHLLIDSTGIKVEGEGEWHARKHGGPKRRVWRKIHLGIDEETLEVRAVEVTGSHIGDAPVLPDLLNQIPAYEQISSVTADGAYDTRKCHDAIADRGARAVIPPRKNAKPWKTVTAGAIARNEALRASKYLGRALWRRWSGYHRRSRVETKMHCVKLLGQRLMARDFDRQVAELQVRIAVLNGYTALGIPVTEPVG
SIO_010081: HmaOT1_RS01465
subclass of: SO_0000673
so part of: HmaOT1_RS01465
location: complement(13297..14229)
location: region:13297-14229:-1
so has part: feature:13297-14229:-1:exon

WP_076534770.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13297-14229:-1:exon

HmaOT1_RS01470
type: Gene
subclass of: SO_0000704
RO_0002162: 195105
locus tag: HmaOT1_RS01470
old locus tag: HmaOT1_01460
pseudo: true
so part of: sequence
location: complement(14546..>15406)
location: region:14546-15406:-1
so has part: feature:14546-15406:-1:exon
subclass of: SO_0000010

position:14546:-1
position: 14546
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15406:-1
position: 15406
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14546-15406:-1:exon

HmaOT1_RS01470
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 195105
locus tag: HmaOT1_RS01470
old locus tag: HmaOT1_01460
inference: COORDINATES: similar to AA sequence:RefSeq:WP_028714619.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: IS110 family transposase
SIO_010081: HmaOT1_RS01470
subclass of: SO_0000673
so part of: HmaOT1_RS01470
location: complement(14546..>15406)
location: region:14546-15406:-1
so has part: feature:14546-15406:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:14546-15406:-1:exon

HmaOT1_RS01475
type: Gene
subclass of: SO_0000704
RO_0002162: 195105
locus tag: HmaOT1_RS01475
old locus tag: HmaOT1_01465
so part of: sequence
location: 15472..16607
location: region:15472-16607:1
so has part: feature:15472-16607:1:exon
subclass of: SO_0000010

position:15472:1
position: 15472
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16607:1
position: 16607
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15472-16607:1:exon

HmaOT1_RS01475
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 195105
locus tag: HmaOT1_RS01475
old locus tag: HmaOT1_01465
inference: COORDINATES: similar to AA sequence:RefSeq:WP_076612068.1
ribosomal slippage: true
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS3 family transposase
translation: MTKRKRYSAEFKAKVALEAIREDLTTAELAKKYDIHPTMITGWKRTAIENMASAFDGKSAAEPTISAGEVEKLHAKIGQLVVERGFFVRSLQSHSRHWRQKAVNQDHPHLSVRRQCSLLSLARSGLYYQPRGESAENLKFMEIIDRQFLETPWYGSRQMARHMQREGHRCGRHRVRRLMRLMRLVPIYQEPKTSKKHPENKIYPYLLKGLAITRPNQVWCTDISYIPMRRGFLYLMAIMDWHSRKVLSWRLSNSMDASFCVEALKEALARYGTPEIFNSDQGSQFTSTEFTQVLLDAKVKISMDGRGRWIDNRMIERLWRSLKYECVYLNAFETGSEARRGIGAWISYYNEKRPHSSHGLLTPAEAYDTANQNLKAAA
SIO_010081: HmaOT1_RS01475
subclass of: SO_0000673
so part of: HmaOT1_RS01475
location: join(15472..15724,15724..16607)
location: region:15472-16607:1
so has part: feature:15472-15724:1:exon
so has part: feature:15724-16607:1:exon

WP_131389364.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15472-15724:1:exon

position:15724:1
position: 15724
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:15724-16607:1:exon

HmaOT1_RS01480
type: Gene
subclass of: SO_0000704
RO_0002162: 195105
locus tag: HmaOT1_RS01480
old locus tag: HmaOT1_01470
pseudo: true
so part of: sequence
location: complement(<16675..16839)
location: region:16675-16839:-1
so has part: feature:16675-16839:-1:exon
subclass of: SO_0000010

position:16675:-1
position: 16675
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:16839:-1
position: 16839
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16675-16839:-1:exon

HmaOT1_RS01480
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 195105
locus tag: HmaOT1_RS01480
old locus tag: HmaOT1_01470
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015821555.1
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: IS110 family transposase
SIO_010081: HmaOT1_RS01480
subclass of: SO_0000673
so part of: HmaOT1_RS01480
location: complement(<16675..16839)
location: region:16675-16839:-1
so has part: feature:16675-16839:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:16675-16839:-1:exon

HmaOT1_RS01485
type: Gene
subclass of: SO_0000704
RO_0002162: 195105
locus tag: HmaOT1_RS01485
old locus tag: HmaOT1_01475
so part of: sequence
location: complement(17044..17463)
location: region:17044-17463:-1
so has part: feature:17044-17463:-1:exon
subclass of: SO_0000010

position:17044:-1
position: 17044
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17463:-1
position: 17463
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17044-17463:-1:exon

HmaOT1_RS01485
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 195105
locus tag: HmaOT1_RS01485
old locus tag: HmaOT1_01475
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014267564.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system VapC family toxin
translation: MIILDTNVISETQKPKPDPKVMAWLDTLDMSSTYLTAITVAELFFGVDQLPEGKRKTVLSDGVSHLIETIFYGRILPFDATAAYFFGSMMADARKQGHTITFPDGAIAAIARGNNFAAVATRDVTPFAAMKIEIINPWE
SIO_010081: HmaOT1_RS01485
subclass of: SO_0000673
so part of: HmaOT1_RS01485
location: complement(17044..17463)
location: region:17044-17463:-1
so has part: feature:17044-17463:-1:exon

WP_035715247.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17044-17463:-1:exon

HmaOT1_RS01490
type: Gene
subclass of: SO_0000704
RO_0002162: 195105
locus tag: HmaOT1_RS01490
old locus tag: HmaOT1_01480
so part of: sequence
location: complement(17460..17699)
location: region:17460-17699:-1
so has part: feature:17460-17699:-1:exon
subclass of: SO_0000010

position:17460:-1
position: 17460
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17699:-1
position: 17699
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17460-17699:-1:exon

HmaOT1_RS01490
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 195105
locus tag: HmaOT1_RS01490
old locus tag: HmaOT1_01480
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011428151.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MGNVTIRNVPDEVHTALKLRAVRHQRSTEAEMRAILTAAVSQETGNGLGQQMRSAWSGHHGSDFDDLRDPSPVEGATFE
SIO_010081: HmaOT1_RS01490
subclass of: SO_0000673
so part of: HmaOT1_RS01490
location: complement(17460..17699)
location: region:17460-17699:-1
so has part: feature:17460-17699:-1:exon

WP_084684284.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17460-17699:-1:exon

HmaOT1_RS01495
type: Gene
subclass of: SO_0000704
RO_0002162: 195105
locus tag: HmaOT1_RS01495
old locus tag: HmaOT1_01485
so part of: sequence
location: complement(18008..18310)
location: region:18008-18310:-1
so has part: feature:18008-18310:-1:exon
subclass of: SO_0000010

position:18008:-1
position: 18008
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18310:-1
position: 18310
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18008-18310:-1:exon

HmaOT1_RS01495
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 195105
locus tag: HmaOT1_RS01495
old locus tag: HmaOT1_01485
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MIIIDELREDIAALEHAEATQDGADVLRSLGAMHRLDKNRRLLAKELLRLEDCLEEVRTILKEGSLPEQDRLDRIYSVVKAARFIPVIRNEIDWCGCDDD
SIO_010081: HmaOT1_RS01495
subclass of: SO_0000673
so part of: HmaOT1_RS01495
location: complement(18008..18310)
location: region:18008-18310:-1
so has part: feature:18008-18310:-1:exon

WP_131389366.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18008-18310:-1:exon

HmaOT1_RS01500
type: Gene
subclass of: SO_0000704
RO_0002162: 195105
locus tag: HmaOT1_RS01500
old locus tag: HmaOT1_01490
so part of: sequence
location: 18798..20135
location: region:18798-20135:1
so has part: feature:18798-20135:1:exon
subclass of: SO_0000010

position:18798:1
position: 18798
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20135:1
position: 20135
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18798-20135:1:exon

HmaOT1_RS01500
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 195105
locus tag: HmaOT1_RS01500
old locus tag: HmaOT1_01490
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006314261.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF3560 domain-containing protein
translation: MTTISATYSPEDNKIRLYASARLDAETFQRVKDAGFKWAPKQELFVAPSWSCAREDLALELAGEIEPEEMTLAERAQMKADRLDAIADKRAAEASAFSRAANELSKAFEFGQPILVGHHSERKARKTQERMHSAQDKASKAHKAIGYWQYRAEGVEAHANHKNDPRVRARRIHGLLAELRDLQRKLNTAHKALATWEKLTTDDHIRAALGIGELYSFNLYSPVERGEMTPQEAREKAMAGARSTIESGNLSRWIMHTLNRLSYEREMLGEVPRYDGEITPTLLQMFVREHGADKPKGSKLDTDLFAVECEAPLPAHIAQGSGLELSADEWRDLMQSCGYLPPAKKDAKPPILNFKAPSGTVSVVNPHRREAQDLPQIELTKAEYARIYAEQRGTRLSTCGGFRVRIAPNPKHEGPRYMAGWAAILITDQKQHDTPESVKDMEAAA
SIO_010081: HmaOT1_RS01500
subclass of: SO_0000673
so part of: HmaOT1_RS01500
location: 18798..20135
location: region:18798-20135:1
so has part: feature:18798-20135:1:exon

WP_035715267.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18798-20135:1:exon

HmaOT1_RS01505
type: Gene
subclass of: SO_0000704
RO_0002162: 195105
locus tag: HmaOT1_RS01505
old locus tag: HmaOT1_01495
so part of: sequence
location: 20132..20734
location: region:20132-20734:1
so has part: feature:20132-20734:1:exon
subclass of: SO_0000010

position:20132:1
position: 20132
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20734:1
position: 20734
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20132-20734:1:exon

HmaOT1_RS01505
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 195105
locus tag: HmaOT1_RS01505
old locus tag: HmaOT1_01495
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006314260.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: methyltransferase type 11
translation: MTRPAMYSRPAKPLTIPVRARRDAPALALDAVPEVIAVDRATECHVTPDDVARRMVEYLGPVGDYLTLEPSAGTGQLARALIASGHSPRELTLIERHHALAATLHKIGPTLHRCFLEYADEARSKVEFPRILMNPPFRELRKHVAAALSLLGRGGHDAATLVALVPVTFEHPDAEHLETLPPDTFSAARVHTKIIRIQCS
SIO_010081: HmaOT1_RS01505
subclass of: SO_0000673
so part of: HmaOT1_RS01505
location: 20132..20734
location: region:20132-20734:1
so has part: feature:20132-20734:1:exon

WP_035715265.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20132-20734:1:exon

HmaOT1_RS20055
type: Gene
subclass of: SO_0000704
RO_0002162: 195105
locus tag: HmaOT1_RS20055
so part of: sequence
location: 21356..21514
location: region:21356-21514:1
so has part: feature:21356-21514:1:exon
subclass of: SO_0000010

position:21356:1
position: 21356
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21514:1
position: 21514
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21356-21514:1:exon

HmaOT1_RS20055
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 195105
locus tag: HmaOT1_RS20055
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTKILATLRSILKSLTTKAKISVSVALSVPGFLKVEVRYARDLTEPRKDKDA
SIO_010081: HmaOT1_RS20055
subclass of: SO_0000673
so part of: HmaOT1_RS20055
location: 21356..21514
location: region:21356-21514:1
so has part: feature:21356-21514:1:exon

WP_156969595.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:21356-21514:1:exon

HmaOT1_RS01510
type: Gene
subclass of: SO_0000704
RO_0002162: 195105
locus tag: HmaOT1_RS01510
old locus tag: HmaOT1_01500
so part of: sequence
location: complement(21549..22016)
location: region:21549-22016:-1
so has part: feature:21549-22016:-1:exon
subclass of: SO_0000010

position:21549:-1
position: 21549
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:22016:-1
position: 22016
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21549-22016:-1:exon

HmaOT1_RS01510
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 195105
locus tag: HmaOT1_RS01510
old locus tag: HmaOT1_01500
inference: COORDINATES: protein motif:HMM:NF024252.2
GO function: GO:0003677 - DNA binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix transcriptional regulator
translation: MRLEQAIRKCGMTLRDAEERFGISKSALSNYINLNRTPKADFLALVVSKLNVDAHWLLTGEETRKPNLHDHTRVFRTYQLARDAFLAVEAAPLPSQVSGEVLENMRSAGEALHQLGGMDAMHAAIQNFFPDDSGRTYRALGILNDFWDGIGAWQR
SIO_010081: HmaOT1_RS01510
subclass of: SO_0000673
so part of: HmaOT1_RS01510
location: complement(21549..22016)
location: region:21549-22016:-1
so has part: feature:21549-22016:-1:exon

WP_254915516.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:21549-22016:-1:exon

HmaOT1_RS01515
type: Gene
subclass of: SO_0000704
RO_0002162: 195105
locus tag: HmaOT1_RS01515
old locus tag: HmaOT1_01505
so part of: sequence
location: 22702..23550
location: region:22702-23550:1
so has part: feature:22702-23550:1:exon
subclass of: SO_0000010

position:22702:1
position: 22702
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:23550:1
position: 23550
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22702-23550:1:exon

HmaOT1_RS01515
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 195105
locus tag: HmaOT1_RS01515
old locus tag: HmaOT1_01505
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011836229.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF932 domain-containing protein
translation: MRGMTNGGSIYGRGEALTDDALRARVPSIFAAEAHESRSARFAPVPTIDVLNNLRAEGFEPFMAQQARTRIEGKAEFTKHMLRLRHRSITNGDGEAFEIILVNANDGTSAYQMLPGFFRFVCSNGLMAGETFSEVKVRHSGNAVGEVIEGAYRVLQDAPEIAERVKEFRAITLQDEERAILAEAAHSLRFPAAHEDGGKAAPVSAESFIRPRRTADRGTDLWTAFNVVQENTIKGGMTGYARDENGRMRRRSVREVAGIDQNRNLNRALWMLTERMAELKAA
SIO_010081: HmaOT1_RS01515
subclass of: SO_0000673
so part of: HmaOT1_RS01515
location: 22702..23550
location: region:22702-23550:1
so has part: feature:22702-23550:1:exon

WP_051911446.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:22702-23550:1:exon

HmaOT1_RS01520
type: Gene
subclass of: SO_0000704
RO_0002162: 195105
locus tag: HmaOT1_RS01520
old locus tag: HmaOT1_01510
so part of: sequence
location: 23608..23895
location: region:23608-23895:1
so has part: feature:23608-23895:1:exon
subclass of: SO_0000010

position:23608:1
position: 23608
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:23895:1
position: 23895
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23608-23895:1:exon

HmaOT1_RS01520
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 195105
locus tag: HmaOT1_RS01520
old locus tag: HmaOT1_01510
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MDDLFPDTIPKGAHGAIWWAGCYECRNWHGYFQSREGGRGNWRFQVPWFSTDDVTCSVYAITEAGEVRTRDLIPIDDKARISIMGRKYGREHWDH
SIO_010081: HmaOT1_RS01520
subclass of: SO_0000673
so part of: HmaOT1_RS01520
location: 23608..23895
location: region:23608-23895:1
so has part: feature:23608-23895:1:exon

WP_035714710.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:23608-23895:1:exon

HmaOT1_RS01525
type: Gene
subclass of: SO_0000704
RO_0002162: 195105
locus tag: HmaOT1_RS01525
old locus tag: HmaOT1_01515
so part of: sequence
location: complement(24169..24810)
location: region:24169-24810:-1
so has part: feature:24169-24810:-1:exon
subclass of: SO_0000010

position:24169:-1
position: 24169
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:24810:-1
position: 24810
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24169-24810:-1:exon

HmaOT1_RS01525
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 195105
locus tag: HmaOT1_RS01525
old locus tag: HmaOT1_01515
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007120059.1
GO function: GO:0003697 - single-stranded DNA binding [Evidence IEA]
GO process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO:0018142 - protein-DNA covalent cross-linking [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: SOS response-associated peptidase family protein
translation: MCNLYRHTRAQDALREIFRGFSVEDRLGNLPSQERIYPNELAPVLRHDGQEGDGLELAMARWGLPSPKQFHSKNGIDKGVTNIRNTGSPHWRRWLNPRFRCLVPLTAFSEPVHGEGKAWFTPAEDRPAFFAGLHVPQWTSIRKLKDGETTDDLYAFLTTEPNAEVAKVHPKAMPVILTSPDEWDAWLHEPWSVVQELQRPLPDGALSMELVAA
SIO_010081: HmaOT1_RS01525
subclass of: SO_0000673
so part of: HmaOT1_RS01525
location: complement(24169..24810)
location: region:24169-24810:-1
so has part: feature:24169-24810:-1:exon

WP_051911444.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:24169-24810:-1:exon

HmaOT1_RS01530
type: Gene
subclass of: SO_0000704
RO_0002162: 195105
locus tag: HmaOT1_RS01530
old locus tag: HmaOT1_01520
so part of: sequence
location: complement(25230..25967)
location: region:25230-25967:-1
so has part: feature:25230-25967:-1:exon
subclass of: SO_0000010

position:25230:-1
position: 25230
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:25967:-1
position: 25967
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:25230-25967:-1:exon

HmaOT1_RS01530
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 195105
locus tag: HmaOT1_RS01530
old locus tag: HmaOT1_01520
inference: COORDINATES: protein motif:HMM:NF018839.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: VirC2 family conjugal transfer protein
translation: MAFQLPKVDHKAIFNQHRRERAIKRKVGLDQSASEGAEMVHDAVPAKPDTSPPVENVAVAEPRIDVPEAPAEPLVTEQKSLPADTEKTTKSRKLTQTLKSESAAKPGEASSPPKPSANADVPEQVAGDTISLKIRLAFPQTGQSQTYDSLAAQIGPQQAVRMIFKRAFDDLRQTLRNDGKLPTATPYAATKDRFVTNKIISRNEWNVAKSSLDPAGIMNPMMFNRTLAERALALFFEKDRQTNAG
SIO_010081: HmaOT1_RS01530
subclass of: SO_0000673
so part of: HmaOT1_RS01530
location: complement(25230..25967)
location: region:25230-25967:-1
so has part: feature:25230-25967:-1:exon

WP_035714707.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:25230-25967:-1:exon

HmaOT1_RS01535
type: Gene
subclass of: SO_0000704
RO_0002162: 195105
locus tag: HmaOT1_RS01535
old locus tag: HmaOT1_01525
so part of: sequence
location: complement(25967..26686)
location: region:25967-26686:-1
so has part: feature:25967-26686:-1:exon
subclass of: SO_0000010

position:26686:-1
position: 26686
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:25967-26686:-1:exon

HmaOT1_RS01535
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 195105
locus tag: HmaOT1_RS01535
old locus tag: HmaOT1_01525
inference: COORDINATES: protein motif:HMM:NF018691.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: AAA family ATPase
translation: MKLVAFTSFKGGAGKSTSLMSSVSGLVQAGKKVALFEADQNDPLSTWQTNARAIGTWDESCQIYDGSELDVFIPNMEKAEQNGCDIALVDMRGGDSELNTAIIANADLVLIPTSLTAMDIDGAISTFQFLLNFMEANEKDVPAAFLLTRVPTGRQSAAEKESLEMLKEMPQLSARLPQRNAFADIMSLGMLHLYHRELAADPNKRILAGHIEVAVREASRISSDILDVIFPERHVAESA
SIO_010081: HmaOT1_RS01535
subclass of: SO_0000673
so part of: HmaOT1_RS01535
location: complement(25967..26686)
location: region:25967-26686:-1
so has part: feature:25967-26686:-1:exon

WP_035714704.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:25967-26686:-1:exon

HmaOT1_RS01540
type: Gene
subclass of: SO_0000704
RO_0002162: 195105
locus tag: HmaOT1_RS01540
old locus tag: HmaOT1_01530
so part of: sequence
location: 27316..27792
location: region:27316-27792:1
so has part: feature:27316-27792:1:exon
subclass of: SO_0000010

position:27316:1
position: 27316
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:27792:1
position: 27792
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:27316-27792:1:exon

HmaOT1_RS01540
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 195105
locus tag: HmaOT1_RS01540
old locus tag: HmaOT1_01530
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011655463.1
GO function: GO:0004519 - endonuclease activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DNA mobilization endonuclease VirD1/MobC family subunit
translation: MSDDQKQKEPWKKRRMIGGQWTDPAAVVSKATVNKTISVRLTEAELADFDAQIDALGINRNRALRIMARQVGGFLEEDAASVAHLADISRQLRGIAVNVNQIAKAANRTTDPDFIAFMEERQRLGKELSRVQSYLQALFDIDKRRSDGAERLKKAAQK
SIO_010081: HmaOT1_RS01540
subclass of: SO_0000673
so part of: HmaOT1_RS01540
location: 27316..27792
location: region:27316-27792:1
so has part: feature:27316-27792:1:exon

WP_233141236.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:27316-27792:1:exon

HmaOT1_RS01545
type: Gene
subclass of: SO_0000704
RO_0002162: 195105
locus tag: HmaOT1_RS01545
old locus tag: HmaOT1_01535
so part of: sequence
location: 27789..28337
location: region:27789-28337:1
so has part: feature:27789-28337:1:exon
subclass of: SO_0000010

position:27789:1
position: 27789
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:28337:1
position: 28337
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:27789-28337:1:exon

HmaOT1_RS01545
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 195105
locus tag: HmaOT1_RS01545
old locus tag: HmaOT1_01535
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSIHVPDLLANARKAPRFLSALDAVMGEDWAEVKLGRGGRMLQMQVALKAAHERDVAPGGAAYSSQILPGINPQSMVKMVRGGGASTARGLMAQMDYLSRQDDLPLRRSEEYMGVEIDAEEAVAMARGWQMPTEGGKADRTSHFVVSFPIGTDPAAAEASGRAWAQEMFGSGNFGGDRALMM
SIO_010081: HmaOT1_RS01545
subclass of: SO_0000673
so part of: HmaOT1_RS01545
location: 27789..28337
location: region:27789-28337:1
so has part: feature:27789-28337:1:exon

WP_131389368.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:27789-28337:1:exon

HmaOT1_RS01550
type: Gene
subclass of: SO_0000704
RO_0002162: 195105
locus tag: HmaOT1_RS01550
old locus tag: HmaOT1_01540
so part of: sequence
location: 28401..29429
location: region:28401-29429:1
so has part: feature:28401-29429:1:exon
subclass of: SO_0000010

position:28401:1
position: 28401
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:29429:1
position: 29429
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:28401-29429:1:exon

HmaOT1_RS01550
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 195105
locus tag: HmaOT1_RS01550
old locus tag: HmaOT1_01540
inference: COORDINATES: similar to AA sequence:RefSeq:WP_028714619.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS110 family transposase
translation: MSEIITVGLDLAKNVFQVHGADAAGGAVLRKKLRRTQVLGFFEALPPCVVAMEACGGAHYWGREIGKLGHEVRLIPPAYVKPFVKRQKNDAADAEAICEAAQRPTMRFVSVKSEETQGAAMVFRVRELLIRQRTQAINALRGHLAEFGQVVPQGAANASKLIAIVEDPESGLPAEATATLQVLIGSLAHLEAQIGRLDAEISRCAKENEVARRLMTVPGIGPLIATAIATLAPPPETFRKARDFAAWLGLVPRQHSTGGKQRLGATTKMGERSLRRLLIIGANSVIIKRHVHREAQPGTWLGNMLSRKPSMLVRVALANKMARIVWALMARGGVYQSPAVAA
SIO_010081: HmaOT1_RS01550
subclass of: SO_0000673
so part of: HmaOT1_RS01550
location: 28401..29429
location: region:28401-29429:1
so has part: feature:28401-29429:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:28401-29429:1:exon

HmaOT1_RS01555
type: Gene
subclass of: SO_0000704
RO_0002162: 195105
locus tag: HmaOT1_RS01555
old locus tag: HmaOT1_01545
so part of: sequence
location: 29746..30678
location: region:29746-30678:1
so has part: feature:29746-30678:1:exon
subclass of: SO_0000010

position:29746:1
position: 29746
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:30678:1
position: 30678
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:29746-30678:1:exon

HmaOT1_RS01555
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 195105
locus tag: HmaOT1_RS01555
old locus tag: HmaOT1_01545
inference: COORDINATES: similar to AA sequence:RefSeq:WP_028710025.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS5-like element ISPko1 family transposase
translation: MSRPTPPTYRTRNWPAYNEALKRRGSLTIWFDPEMSWDAAPTGRRGRQQTYSDAAIQTCLSMKVLFGMALRQTTGFVESLLRLVGLDWAVPDFSTLSRRQKTLAVNIPYRGSKGPLHLLIDSTGIKVEGEGEWHARKHGGPKRRVWRKIHLGIDEETLEVRAVEVTGSHIGDAPVLPDLLNQIPAYEQISSVTADGAYDTRKCHDAIADRGARAVIPPRKNAKPWKTVTAGAIARNEALRASKYLGRALWRRWSGYHRRSRVETKMHCVKLLGQRLMARDFDRQVAELQVRIAVLNGYTALGIPVTEPVG
SIO_010081: HmaOT1_RS01555
subclass of: SO_0000673
so part of: HmaOT1_RS01555
location: 29746..30678
location: region:29746-30678:1
so has part: feature:29746-30678:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:29746-30678:1:exon

HmaOT1_RS01560
type: Gene
subclass of: SO_0000704
RO_0002162: 195105
locus tag: HmaOT1_RS01560
old locus tag: HmaOT1_01550
so part of: sequence
location: complement(30986..32014)
location: region:30986-32014:-1
so has part: feature:30986-32014:-1:exon
subclass of: SO_0000010

position:30986:-1
position: 30986
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:32014:-1
position: 32014
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:30986-32014:-1:exon

HmaOT1_RS01560
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 195105
locus tag: HmaOT1_RS01560
old locus tag: HmaOT1_01550
inference: COORDINATES: similar to AA sequence:RefSeq:WP_028714619.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS110 family transposase
translation: MSEIITVGLDLAKNVFQVHGADAAGGAVLRKKLRRTQVLGFFEALPPCVVAMEACGGAHYWGREIGKLGHEVRLIPPAYVKPFVKRQKNDAADAEAICEAAQRPTMRFVSVKSEETQGAAMVFRVRELLIRQRTQAINALRGHLAEFGQVVPQGAANASKLIAIVEDPESGLPAEATATLQVLIGSLAHLEAQIGRLDAEISRCAKENEVARRLMTVPGIGPLIATAIATLAPPPETFRKARDFAAWLGLVPRQHSTGGKQRLGATTKMGERSLRRLLIIGANSVIIKRHVHREAQPGTWLGNMLSRKPSMLVRVALANKMARIVWALMARGGVYQSPAVAA
SIO_010081: HmaOT1_RS01560
subclass of: SO_0000673
so part of: HmaOT1_RS01560
location: complement(30986..32014)
location: region:30986-32014:-1
so has part: feature:30986-32014:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:30986-32014:-1:exon

HmaOT1_RS01565
type: Gene
subclass of: SO_0000704
RO_0002162: 195105
locus tag: HmaOT1_RS01565
old locus tag: HmaOT1_01555
so part of: sequence
location: 32029..33978
location: region:32029-33978:1
so has part: feature:32029-33978:1:exon
subclass of: SO_0000010

position:32029:1
position: 32029
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:33978:1
position: 33978
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:32029-33978:1:exon

HmaOT1_RS01565
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 195105
locus tag: HmaOT1_RS01565
old locus tag: HmaOT1_01555
inference: COORDINATES: protein motif:HMM:NF015397.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: relaxase/mobilization nuclease domain-containing protein
translation: MDHRRPTLAQRCRRGAVTSSEPGDRFDYYTAFHTDKDHPHIHVIVHRRGMDNGTWLAVSKRSEFNYQTFRDVHVRVAGEHGIDLEATPRLTRGVHERAVPDAEYRRAQAEGRKPVAPSHTEESGIRAAAALVHHARRMEADATALQATDPDFSALLRTASERLAHGMEITPDHHDKTTLTQKDLSPMAERLEQARTTVRDNFTSMDQTVADIPAGADRVRFERQIAELKAEAAPSMPERDALRAFLQPAPDGQYRGMREDNYDARYAEIKGQADRQVEQLAERAGLNGIAMVARYSGEAPSRGLAQQYAASEAQEREMSRSQRGEPEETPSQRNAALAQAHQAIQRIYREANERATGASVGISVAEVGELRDQFRAVDWTHQNSDSSEDYRRGRAQVAAAGEALGKFASRSPDHAAVASAAWDEAAGNATPPAGYVAADKRSLSPEQISAVFKADERQPQADRTPVSVDRSGEVDMTLIRILRDRFTKTDFNYGYSDSPQARAEGQEQVRNAEAAFRSFAAKSPAYAAVASAAWDQATDIYRPPEGYVRPNDRQIPVERTNELLREAAQLDRADRMAQAEREIAARHAQRATDTAEGRTGDAAPTPQQPRAVTAEDKKLADRAERMAEAERDIAARQAKGKDRDSGHGL
SIO_010081: HmaOT1_RS01565
subclass of: SO_0000673
so part of: HmaOT1_RS01565
location: 32029..33978
location: region:32029-33978:1
so has part: feature:32029-33978:1:exon

WP_131389370.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:32029-33978:1:exon

HmaOT1_RS20405
type: Gene
subclass of: SO_0000704
RO_0002162: 195105
gene: virD4
locus tag: HmaOT1_RS20405
old locus tag: HmaOT1_01560
pseudo: true
so part of: sequence
location: 33990..>35843
location: region:33990-35843:1
so has part: feature:33990-35843:1:exon
subclass of: SO_0000010

position:33990:1
position: 33990
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:35843:1
position: 35843
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:33990-35843:1:exon

HmaOT1_RS20405
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 195105
gene: virD4
locus tag: HmaOT1_RS20405
old locus tag: HmaOT1_01560
inference: COORDINATES: protein motif:HMM:NF010424.0
note: The ATPase VirD4 is a core component of the VirB/VirD4 form of type IV secretion systems (T4SS), also known as type IVa secretion systems.; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: type IV secretion system ATPase VirD4
SIO_010081: HmaOT1_RS20405
subclass of: SO_0000673
so part of: HmaOT1_RS20405
location: 33990..>35843
location: region:33990-35843:1
so has part: feature:33990-35843:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:33990-35843:1:exon

HmaOT1_RS20410
type: Gene
subclass of: SO_0000704
RO_0002162: 195105
locus tag: HmaOT1_RS20410
pseudo: true
so part of: sequence
location: complement(36018..>36335)
location: region:36018-36335:-1
so has part: feature:36018-36335:-1:exon
subclass of: SO_0000010

position:36018:-1
position: 36018
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:36335:-1
position: 36335
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:36018-36335:-1:exon

HmaOT1_RS20410
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 195105
locus tag: HmaOT1_RS20410
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011654614.1
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: ATPase, T2SS/T4P/T4SS family
SIO_010081: HmaOT1_RS20410
subclass of: SO_0000673
so part of: HmaOT1_RS20410
location: complement(36018..>36335)
location: region:36018-36335:-1
so has part: feature:36018-36335:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:36018-36335:-1:exon

HmaOT1_RS01575
type: Gene
subclass of: SO_0000704
RO_0002162: 195105
gene: repC
locus tag: HmaOT1_RS01575
old locus tag: HmaOT1_01565
so part of: sequence
location: 36700..37812
location: region:36700-37812:1
so has part: feature:36700-37812:1:exon
subclass of: SO_0000010

position:36700:1
position: 36700
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:37812:1
position: 37812
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:36700-37812:1:exon

HmaOT1_RS01575
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 195105
gene: repC
locus tag: HmaOT1_RS01575
old locus tag: HmaOT1_01565
inference: COORDINATES: protein motif:HMM:NF015393.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication initiation protein RepC
translation: MVTKPLQVLGKPNENYRQFSADLYEAARNAALVMKLPDGVRRTLEALIGRIPRGSEVPISPASVSTLSFECGKNPRTILNHVRFLVRNGLAVDRSMGGGRRYCQRDQSGRIIAVHGIDLTPLQDRADELTMAAEAMRAERVAADRMRNEISRLRSMIRRILSGTDVAAEDQQTWASFPRRIAHLEYEDLSKLLNHVRRFLTHLGRSEISDRPEKNDRPYTTNQYPSESCNPAMPAENKMGQGASTPPTQTPKCGMEHISLPMALKAAPAEWHVGMELYGRADWMAFVNVGYERAMALGINPSAWAQAQAAIGKVGAALLVMIADADGYERGGKIRNAGAWVRRMSERAELGTAQLHRSVFGLLHREHATC
SIO_010081: HmaOT1_RS01575
subclass of: SO_0000673
so part of: HmaOT1_RS01575
location: 36700..37812
location: region:36700-37812:1
so has part: feature:36700-37812:1:exon

WP_158212533.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:36700-37812:1:exon

HmaOT1_RS01580
type: Gene
subclass of: SO_0000704
RO_0002162: 195105
locus tag: HmaOT1_RS01580
old locus tag: HmaOT1_01570
so part of: sequence
location: 38003..39073
location: region:38003-39073:1
so has part: feature:38003-39073:1:exon
subclass of: SO_0000010

position:38003:1
position: 38003
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:39073:1
position: 39073
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:38003-39073:1:exon

HmaOT1_RS01580
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 195105
locus tag: HmaOT1_RS01580
old locus tag: HmaOT1_01570
EC number: 2.7.13.3
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011840575.1
GO function: GO:0005524 - ATP binding [Evidence IEA]; GO:0000155 - phosphorelay sensor kinase activity [Evidence IEA]; GO:0004673 - protein histidine kinase activity [Evidence IEA]
GO process: GO:0007165 - signal transduction [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: sensor histidine kinase
translation: MTTSLAFLDLTIPMAQRVAEHDWSSTPLGPIDTWPPVLKITVSLTLRSGFPKCLCWGSELIAIYNDAFIPTLGDKGDCLGLPFSVIWQESWDTIGPIVAKAMVGEATFVKDFPMKVRRDANGLAEAFFTFSYSPVVDEEGVVRGIMDTVIETTDRVRFERRAAISNRELVHRSKNSYALVTAIVRQIARQASTVEEYRDKLVQRISDMGHAQDVLSLRAHEEATVRDVVHHMRERMDGKGTRITLSGPDVALSDEETFALTLALFELATNSAKYGALSAEAGRVSVDWSLSGEGTNATFIFCWTERGGPPVAPPQRRGFGSFLVKQMLAAEFGGEVSVDYPEEGVVCQLTCQRSER
SIO_010081: HmaOT1_RS01580
subclass of: SO_0000673
so part of: HmaOT1_RS01580
location: 38003..39073
location: region:38003-39073:1
so has part: feature:38003-39073:1:exon

WP_035714675.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:38003-39073:1:exon

HmaOT1_RS01585
type: Gene
subclass of: SO_0000704
RO_0002162: 195105
locus tag: HmaOT1_RS01585
old locus tag: HmaOT1_01575
so part of: sequence
location: 39171..39557
location: region:39171-39557:1
so has part: feature:39171-39557:1:exon
subclass of: SO_0000010

position:39171:1
position: 39171
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:39557:1
position: 39557
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:39171-39557:1:exon

HmaOT1_RS01585
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 195105
locus tag: HmaOT1_RS01585
old locus tag: HmaOT1_01575
inference: COORDINATES: protein motif:HMM:NF012301.2
GO process: GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: response regulator
translation: MPSTILVVEDAALLAMDLVMALEDAGYAVVGVAATKQAALALAEAHPIDLATMDVELAHGSNGIDTAIELRERFSIPSLFVSGSLGKEIMEKAAPAEPVGFLNKPISSDDVLRAVERYLGGGDLPNVR
SIO_010081: HmaOT1_RS01585
subclass of: SO_0000673
so part of: HmaOT1_RS01585
location: 39171..39557
location: region:39171-39557:1
so has part: feature:39171-39557:1:exon

WP_035714674.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:39171-39557:1:exon

HmaOT1_RS01590
type: Gene
subclass of: SO_0000704
RO_0002162: 195105
locus tag: HmaOT1_RS01590
old locus tag: HmaOT1_01580
so part of: sequence
location: complement(39772..42657)
location: region:39772-42657:-1
so has part: feature:39772-42657:-1:exon
subclass of: SO_0000010

position:39772:-1
position: 39772
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:42657:-1
position: 42657
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:39772-42657:-1:exon

HmaOT1_RS01590
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 195105
locus tag: HmaOT1_RS01590
old locus tag: HmaOT1_01580
inference: COORDINATES: similar to AA sequence:RefSeq:WP_076612398.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Tn3 family transposase
translation: MPRRSILTARQRAALFDLPTDDASMLRHYTLADDDLEIVRARRRPHNRFGFALQLCALRYPGRLLAPGEVIPLAVTRFLAAQLGMRPDDLAGYATREETRHEHLAALREIYGYKMFAGRGARDLKIWLEDAAEAARSNEDLARRFVEQCRATQTIFPGITVIERLCAEALVAAERRIDARIGGRLDDAMRARLDALLTEDAGGSVTRFVWLRQFETGQNSADMNRLLDRLEYLRALALDRGILADVPPHRVARLRRQGERYFAGDLRDISGDRRLAILAVCALEWRCAIADAVVETHDRIVGKTWREAKSRCDARMDDARSALKDTLQSFRTLGAALLEAHEDRASLEEAVGNAGGWISLKGLVATAAQLTDTFAADPLAHVGHGYHRFRRYAPRMLRVLDICAAPVAEPLLAASAVIAGTATPDVRPLTFLRRASKWHRHLDGEDEHRIWEVAVLFHLREAFRSGDIWLAHSRRYGDLKEALVPVDVARATPRLAMPFEPETWLADRKARMADALHRLARAARAGTMPGGSIEDGTLKIDRLAAAVPEEADALVLDLYGRLPEVRVTDLLLEVDAEVGFTEAFTHLRTGAPCRDRIGLLNVLLAEGLNLGLSKMAGATNTHDFFQLSRLSRWHVESEAMARALAMVIDGQSALPMAQFWGAGQTASSDGQFFPTTRQGEAMNLINAKYGHEPGLKAYTHVSDQFGPFATQTIPATVNEAPYILDGLLMTSAGQKIREQYADTGGFTDHVFAVTALLGFQFIPRIRDLPSKRLYLFDPAACPKELKGLIGGKIRQSLIAANWPDILRSVATMASGAIPPSQLLRKFASYPRQHELAVALREIGRVERTLFIIDWLLDAGMQRRAQIGLNKGEAHHALKNALRIGRQGEIRDRTSEAQHFRMAGLNLLAAIVIYWNTKHLGQAVASRRREGLDCSPNLLAHISPLGWAHVLLTGEYKWPKRA
SIO_010081: HmaOT1_RS01590
subclass of: SO_0000673
so part of: HmaOT1_RS01590
location: complement(39772..42657)
location: region:39772-42657:-1
so has part: feature:39772-42657:-1:exon

WP_131389039.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:39772-42657:-1:exon

HmaOT1_RS01595
type: Gene
subclass of: SO_0000704
RO_0002162: 195105
locus tag: HmaOT1_RS01595
old locus tag: HmaOT1_01585
so part of: sequence
location: 42823..43410
location: region:42823-43410:1
so has part: feature:42823-43410:1:exon
subclass of: SO_0000010

position:42823:1
position: 42823
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:43410:1
position: 43410
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:42823-43410:1:exon

HmaOT1_RS01595
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 195105
locus tag: HmaOT1_RS01595
old locus tag: HmaOT1_01585
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013635075.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO process: GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MTVTKIGYARCSTDRQDLTAQRAALAELGVTVDRIYTDHGLTGTNRARPGLDQALAAVREGDVLVVPKLDRLARSVPDARAIADQLEKKGVKLALGASVYDPTDPMGKMFFNILATFAEFEADLIRMRTREGMAIARARGKLRGKQPKLSEKQQKELSRMHASGEYSISDLAELFAVSRPTVYRTLQRNPAKTQP
SIO_010081: HmaOT1_RS01595
subclass of: SO_0000673
so part of: HmaOT1_RS01595
location: 42823..43410
location: region:42823-43410:1
so has part: feature:42823-43410:1:exon

WP_076625761.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:42823-43410:1:exon

HmaOT1_RS01605
type: Gene
subclass of: SO_0000704
RO_0002162: 195105
locus tag: HmaOT1_RS01605
old locus tag: HmaOT1_01595
so part of: sequence
location: complement(44006..44899)
location: region:44006-44899:-1
so has part: feature:44006-44899:-1:exon
subclass of: SO_0000010

position:44006:-1
position: 44006
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:44899:-1
position: 44899
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:44006-44899:-1:exon

HmaOT1_RS01605
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 195105
locus tag: HmaOT1_RS01605
old locus tag: HmaOT1_01595
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013850476.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTYNPTPEGPTTHSHTTPTMWGHLKQVSWGAIFAGVAVALVVQVLLTLLGVGIGAATLDPGTADNPAASTFSVVSAIWYAISGIVAAFVGGLVASRMSGRTEEQIGGLHGLTAWAVTTLLMLYLLTSSVGAVVGGAFSGLSSAIGGVSQTVANAAGPALDDVNPLDALDQQIESTGNDPEALRQRAVNAMRGLAMSDEAGRDQARQEAAQALSDMRSIPLPEAREQVSQMEQQYRETVDQAQQTATEAAETAANAVSIGAIAAFVALLAGAIAAWMGGRRGVSHPTVIVQQDAPRRR
SIO_010081: HmaOT1_RS01605
subclass of: SO_0000673
so part of: HmaOT1_RS01605
location: complement(44006..44899)
location: region:44006-44899:-1
so has part: feature:44006-44899:-1:exon

WP_035714671.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:44006-44899:-1:exon

HmaOT1_RS01610
type: Gene
subclass of: SO_0000704
RO_0002162: 195105
locus tag: HmaOT1_RS01610
old locus tag: HmaOT1_01600
so part of: sequence
location: complement(45206..45844)
location: region:45206-45844:-1
so has part: feature:45206-45844:-1:exon
subclass of: SO_0000010

position:45206:-1
position: 45206
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:45844:-1
position: 45844
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:45206-45844:-1:exon

HmaOT1_RS01610
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 195105
locus tag: HmaOT1_RS01610
old locus tag: HmaOT1_01600
inference: COORDINATES: protein motif:HMM:NF014038.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: CYTH domain-containing protein
translation: MPTEIERKFLIRSNDWEPHVMRTLHILDYLVARFDTGKARIRICGEEAILTFKGQKTGVRRGEYHLPLEKEQARVMIDEFVVSDAVEKNRHEVEVAGVVWQVDEYLGALSGFVTADVELPHEDHRLVLPAWAGPEITNDARFGSSALTAALDRGEEAVEALFEAAMLGAKESSRKAASICDQREPRTSDHTKTSFALREDVNARTDLIINDD
SIO_010081: HmaOT1_RS01610
subclass of: SO_0000673
so part of: HmaOT1_RS01610
location: complement(45206..45844)
location: region:45206-45844:-1
so has part: feature:45206-45844:-1:exon

WP_051911431.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:45206-45844:-1:exon

HmaOT1_RS01615
type: Gene
subclass of: SO_0000704
RO_0002162: 195105
locus tag: HmaOT1_RS01615
old locus tag: HmaOT1_01605
so part of: sequence
location: complement(45930..46793)
location: region:45930-46793:-1
so has part: feature:45930-46793:-1:exon
subclass of: SO_0000010

position:45930:-1
position: 45930
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:46793:-1
position: 46793
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:45930-46793:-1:exon

HmaOT1_RS01615
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 195105
locus tag: HmaOT1_RS01615
old locus tag: HmaOT1_01605
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015824003.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: YsnF/AvaK domain-containing protein
translation: MTYTTDTGTGTTGTTGGTAISALFDNRTDAEQATARLREVGIPEAQIRVVQGAESATTGVADPEGSKGFWDSLSDLFFPNEDRYSYAEGLSRGGYLVAVTGLNDAEYDAALAILDDEGTVNIEEREESWRSEGWSGYENSPYATAGAATAPMAAATDRVSDDAAIPVVEERLRVGKRDTNRGHVRVRAYTVEEPVSESVDLREERVELERRPVDRAAVVDEDFRDRTIEAEEHREEAVVAKDARVVEEIGLRKTSDTHRETVSDTVRHTEVEVDDDRDDRELPRTGR
SIO_010081: HmaOT1_RS01615
subclass of: SO_0000673
so part of: HmaOT1_RS01615
location: complement(45930..46793)
location: region:45930-46793:-1
so has part: feature:45930-46793:-1:exon

WP_084684263.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:45930-46793:-1:exon

HmaOT1_RS01620
type: Gene
subclass of: SO_0000704
RO_0002162: 195105
locus tag: HmaOT1_RS01620
old locus tag: HmaOT1_01610
so part of: sequence
location: complement(46795..47214)
location: region:46795-47214:-1
so has part: feature:46795-47214:-1:exon
subclass of: SO_0000010

position:46795:-1
position: 46795
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:47214:-1
position: 47214
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:46795-47214:-1:exon

HmaOT1_RS01620
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 195105
locus tag: HmaOT1_RS01620
old locus tag: HmaOT1_01610
inference: COORDINATES: protein motif:HMM:NF021098.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: YsnF/AvaK domain-containing protein
translation: MTEDGKDVLPLVEERVSVTAEARVSGRVRVSTHTEAVDTLIPVDLAEVDVEVTRIPVDRAVDHAPDITTDGDTTIIPVMEERLVVTRQLFVREEIHIRRMTHRETVDVPVTTRRQTATIERLPPHDEQDIPPFPSDKDI
SIO_010081: HmaOT1_RS01620
subclass of: SO_0000673
so part of: HmaOT1_RS01620
location: complement(46795..47214)
location: region:46795-47214:-1
so has part: feature:46795-47214:-1:exon

WP_051911429.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:46795-47214:-1:exon

HmaOT1_RS01625
type: Gene
subclass of: SO_0000704
RO_0002162: 195105
locus tag: HmaOT1_RS01625
old locus tag: HmaOT1_01615
so part of: sequence
location: 47533..48357
location: region:47533-48357:1
so has part: feature:47533-48357:1:exon
subclass of: SO_0000010

position:47533:1
position: 47533
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:48357:1
position: 48357
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:47533-48357:1:exon

HmaOT1_RS01625
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 195105
locus tag: HmaOT1_RS01625
old locus tag: HmaOT1_01615
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012760461.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: manganese catalase family protein
translation: MFYTDNKLQYPVRVDTPNPLFARALQQAIGGVEGEIRVAMQYFFQACGARGNPKFRDLLMNTAAEELGHIEMLAHAVALNLEGAPLSLKEEMAKDSAINAVMGGMNLKNLLSSGLSAMPVDSDGVPFDMSHIYASGNIAADMTANIAAESTGRTLAVRLYNMTDDPGMKDMLQYLIARDTMHQNQWMAALEELGGAKGAFPIPNSHPQAEEKTEFSYAYLGFQKDGSAPAPGRWSEGSSIDGKGEFTVAKLGALGEVPDLGKAKPKSGAQSEQM
SIO_010081: HmaOT1_RS01625
subclass of: SO_0000673
so part of: HmaOT1_RS01625
location: 47533..48357
location: region:47533-48357:1
so has part: feature:47533-48357:1:exon

WP_035714670.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:47533-48357:1:exon

HmaOT1_RS01630
type: Gene
subclass of: SO_0000704
RO_0002162: 195105
locus tag: HmaOT1_RS01630
old locus tag: HmaOT1_01620
so part of: sequence
location: 48369..48722
location: region:48369-48722:1
so has part: feature:48369-48722:1:exon
subclass of: SO_0000010

position:48369:1
position: 48369
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:48722:1
position: 48722
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:48369-48722:1:exon

HmaOT1_RS01630
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 195105
locus tag: HmaOT1_RS01630
old locus tag: HmaOT1_01620
inference: COORDINATES: protein motif:HMM:NF020376.2
GO function: GO:0016818 - hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: HIRAN domain-containing protein
translation: MQRRILIGGFAAAAPLAVLPADAAPRPATAVEVLRTSLSNTDTSGDWLRPGERLRLMRDPARRFDPSSVAVIDNDGRRLGYVPPVQAGALSRLLDAGVAGFAEASQTGEVRVFLEIV
SIO_010081: HmaOT1_RS01630
subclass of: SO_0000673
so part of: HmaOT1_RS01630
location: 48369..48722
location: region:48369-48722:1
so has part: feature:48369-48722:1:exon

WP_084684261.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:48369-48722:1:exon

HmaOT1_RS01635
type: Gene
subclass of: SO_0000704
RO_0002162: 195105
locus tag: HmaOT1_RS01635
old locus tag: HmaOT1_01625
so part of: sequence
location: 49389..49970
location: region:49389-49970:1
so has part: feature:49389-49970:1:exon
subclass of: SO_0000010

position:49389:1
position: 49389
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:49970:1
position: 49970
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:49389-49970:1:exon

HmaOT1_RS01635
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 195105
locus tag: HmaOT1_RS01635
old locus tag: HmaOT1_01625
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009906788.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO process: GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MSRTFAYVRVSTIQQTIENQVQELETAGFIIPKRRIVSETISGSVPAQQRPMFARLIDRLEESDVLVVTKMDRLGRDAMDVAQTVNLLAEMQVRVHCLALGGSDLTSPAGQFTMAILNAVAQFERELLIERTHAGMARARSQGKIIGRPAKLSAAQKHSIRAELDVGVSVSDLARRYGCSRMTIARCKGNVEP
SIO_010081: HmaOT1_RS01635
subclass of: SO_0000673
so part of: HmaOT1_RS01635
location: 49389..49970
location: region:49389-49970:1
so has part: feature:49389-49970:1:exon

WP_035714669.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:49389-49970:1:exon

HmaOT1_RS01640
type: Gene
subclass of: SO_0000704
RO_0002162: 195105
locus tag: HmaOT1_RS01640
old locus tag: HmaOT1_01630
so part of: sequence
location: complement(50172..51104)
location: region:50172-51104:-1
so has part: feature:50172-51104:-1:exon
subclass of: SO_0000010

position:50172:-1
position: 50172
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:51104:-1
position: 51104
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:50172-51104:-1:exon

HmaOT1_RS01640
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 195105
locus tag: HmaOT1_RS01640
old locus tag: HmaOT1_01630
inference: COORDINATES: similar to AA sequence:RefSeq:WP_076611945.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS5 family transposase
translation: MSKPEAVRYRTTNWKSYNKALKRRGSLLIWLDKDMVWLPPKAGRPGRPPVFSDAAIQFCLMVKVLFGLPLRQTTGMVASILKMAGLDWPVPDFSTLSRRQGSLVVDIPHRRATGPLNLLVDSTGIKFLGDGEWLARKHGTHRRRQYRKVHLAMDTATGDIRAVEFTSSREGDSPVLPDLLDQIPADEQVGTVTGDGAFDTRRCHTAIVDRGGTAIIPIRKNGRLWKENCPAARARNDILRASKRFGRANWKHWSGYHVRSRIEAKMRCLKSFGERIASRDPDRQTAEIHIRIALMNRFNTLGTAETERVA
SIO_010081: HmaOT1_RS01640
subclass of: SO_0000673
so part of: HmaOT1_RS01640
location: complement(50172..51104)
location: region:50172-51104:-1
so has part: feature:50172-51104:-1:exon

WP_028720084.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:50172-51104:-1:exon

HmaOT1_RS01645
type: Gene
subclass of: SO_0000704
RO_0002162: 195105
locus tag: HmaOT1_RS01645
old locus tag: HmaOT1_01635
so part of: sequence
location: 51600..52720
location: region:51600-52720:1
so has part: feature:51600-52720:1:exon
subclass of: SO_0000010

position:51600:1
position: 51600
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:52720:1
position: 52720
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:51600-52720:1:exon

HmaOT1_RS01645
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 195105
locus tag: HmaOT1_RS01645
old locus tag: HmaOT1_01635
inference: COORDINATES: similar to AA sequence:RefSeq:WP_076612082.1
ribosomal slippage: true
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS3 family transposase
translation: MSKRKQHAPEFKAKVALEALKGEETAAELASRKRALLDGASGVFERGGRKMPEIDEEQVKELHAKIGELAVANFFFGKKAEALGREVRRGMIEPDHPDLSIGQQCKLLSIGRSSFYYKPKGETEQNLGLMRRIDEQFLETPFFGVRQMTWHLRNDGHLVNEKRIRRLMRLMGLMPIYQKPNTSRPAKGHKTYPYLLRGLRVERPNQVWCSDITYLPMRRGFLYLVAIMDWHTRKVLSWRISNTLEADFCVEALNEAIYKFGPPEIMNTDQGSQFTSFAWTDRLRRSGVRISMDGKGRFLDNIFIERLWRTLKYECVYLHAWETGSETKAAIRKWMTFYNHQRPHSALAGQPPALVYWQRNDNNQPDQQVQRVA
SIO_010081: HmaOT1_RS01645
subclass of: SO_0000673
so part of: HmaOT1_RS01645
location: join(51600..51819,51819..52720)
location: region:51600-52720:1
so has part: feature:51600-51819:1:exon
so has part: feature:51819-52720:1:exon

WP_242685152.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:51600-51819:1:exon

position:51819:1
position: 51819
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:51819-52720:1:exon

HmaOT1_RS01650
type: Gene
subclass of: SO_0000704
RO_0002162: 195105
locus tag: HmaOT1_RS01650
old locus tag: HmaOT1_01640
so part of: sequence
location: 52934..53113
location: region:52934-53113:1
so has part: feature:52934-53113:1:exon
subclass of: SO_0000010

position:52934:1
position: 52934
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:53113:1
position: 53113
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:52934-53113:1:exon

HmaOT1_RS01650
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 195105
locus tag: HmaOT1_RS01650
old locus tag: HmaOT1_01640
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRKIAPTRDKPRSAKAFFFVVAAAFGVAAAMVLYMSSQQVPAITGAQGVAAPDVEVSTP
SIO_010081: HmaOT1_RS01650
subclass of: SO_0000673
so part of: HmaOT1_RS01650
location: 52934..53113
location: region:52934-53113:1
so has part: feature:52934-53113:1:exon

WP_035715218.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:52934-53113:1:exon

HmaOT1_RS01655
type: Gene
subclass of: SO_0000704
RO_0002162: 195105
locus tag: HmaOT1_RS01655
old locus tag: HmaOT1_01645
so part of: sequence
location: complement(53191..54066)
location: region:53191-54066:-1
so has part: feature:53191-54066:-1:exon
subclass of: SO_0000010

position:53191:-1
position: 53191
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:54066:-1
position: 54066
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:53191-54066:-1:exon

HmaOT1_RS01655
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 195105
locus tag: HmaOT1_RS01655
old locus tag: HmaOT1_01645
inference: COORDINATES: protein motif:HMM:NF023697.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF3618 domain-containing protein
translation: MTDSPDKIEAEVEANRANVESTLDALKSRLSVENVVNDATRFVGINDARGTLVAVGREIRAEPVAFGMIGLGLALLATGVARREPQDPRLPYTPTGRTPQHGYDRTARSMQAGSPEKGLGDRIHEYSDQARNAASDYSSKAGEKVAEYSDAANRRLHDAQHAVHEGYDAVRDRASDFQRRAGQQMESQPLLFGALALAAGAVIAAALPRSSVEDRWVGPARDRLLDEATDVAANLADRGTDAAKAGYAAAVETAKDEGLVPQGGDTIASKVEHVVQAAVAGAKSKIDKDQA
SIO_010081: HmaOT1_RS01655
subclass of: SO_0000673
so part of: HmaOT1_RS01655
location: complement(53191..54066)
location: region:53191-54066:-1
so has part: feature:53191-54066:-1:exon

WP_035715220.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:53191-54066:-1:exon

HmaOT1_RS01660
type: Gene
subclass of: SO_0000704
RO_0002162: 195105
locus tag: HmaOT1_RS01660
old locus tag: HmaOT1_01650
so part of: sequence
location: complement(54063..54464)
location: region:54063-54464:-1
so has part: feature:54063-54464:-1:exon
subclass of: SO_0000010

position:54063:-1
position: 54063
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:54464:-1
position: 54464
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:54063-54464:-1:exon

HmaOT1_RS01660
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 195105
locus tag: HmaOT1_RS01660
old locus tag: HmaOT1_01650
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011908904.1
GO component: GO:0016020 - membrane [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: phage holin family protein
translation: MAYDNRDSDPRGIATLLSDLVRDLTELVRSEGRLVRSEINESGRKLAAGAEMLAAGAIIMLLAAIVLLQALVLALAHWVGPTWAAVIVGGVLFVIGAILMVRGKKNLSVSTLLPERAVEQTSRDAKLAKDQLK
SIO_010081: HmaOT1_RS01660
subclass of: SO_0000673
so part of: HmaOT1_RS01660
location: complement(54063..54464)
location: region:54063-54464:-1
so has part: feature:54063-54464:-1:exon

WP_035715222.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:54063-54464:-1:exon