Campylobacter coli strain FDAARGOS_735 plasmid unnamed1, complete sequence.
Campylobacter coli (Campylobacter hyoilei)
Bacteria; Campylobacterota; Epsilonproteobacteria; Campylobacterales; Campylobacteraceae; Campylobacter.
FDA dAtabase for Regulatory Grade micrObial Sequences (FDA-ARGOS): Supporting development and validation of Infectious Disease Dx tests
Submitted (21-NOV-2019) Center for Devices and Radiological Health, US Food and Drug Administration, 10903 New Hampshire Avenue, Silver Spring, MD 20993-0002, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP046318.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: canu v. 1.4\nGenome Coverage :: 2259.03x\nSequencing Technology :: Pacbio; Illumina\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 11/12/2022 23:13:13\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 1,778\nCDSs (total) :: 1,722\nGenes (coding) :: 1,694\nCDSs (with protein) :: 1,694\nGenes (RNA) :: 56\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 44\nncRNAs :: 3\nPseudo Genes (total) :: 28\nCDSs (without protein) :: 28\nPseudo Genes (ambiguous residues) :: 0 of 28\nPseudo Genes (frameshifted) :: 21 of 28\nPseudo Genes (incomplete) :: 3 of 28\nPseudo Genes (internal stop) :: 5 of 28\nPseudo Genes (multiple problems) :: 1 of 28\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
BEI Resources/American Type and Culture Collection (ATCC)
COORDINATES: similar to AA sequence:RefSeq:WP_002823507.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_002838104.1
COORDINATES: similar to AA sequence:RefSeq:WP_002784998.1
COORDINATES: similar to AA sequence:RefSeq:WP_002792775.1
COORDINATES: similar to AA sequence:RefSeq:WP_002840246.1
type II toxin-antitoxin system VapC family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_002840249.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_012289817.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002784330.1
RNA-guided endonuclease TnpB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_002783722.1
COORDINATES: similar to AA sequence:RefSeq:WP_002838516.1
COORDINATES: similar to AA sequence:RefSeq:WP_002804092.1
TraI/MobA(P) family conjugative relaxase
COORDINATES: similar to AA sequence:RefSeq:WP_002779829.1
COORDINATES: similar to AA sequence:RefSeq:WP_002823899.1
COORDINATES: similar to AA sequence:RefSeq:WP_002782959.1
COORDINATES: similar to AA sequence:RefSeq:WP_002782960.1
GO:0004252 - serine-type endopeptidase activity [Evidence IEA]
GO:0009306 - protein secretion [Evidence IEA]; GO:0006465 - signal peptide processing [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002779836.1
COORDINATES: similar to AA sequence:RefSeq:WP_002804094.1
COORDINATES: similar to AA sequence:RefSeq:WP_048813205.1
COORDINATES: similar to AA sequence:RefSeq:WP_002814348.1
COORDINATES: similar to AA sequence:RefSeq:WP_002824096.1
type IV secretory system conjugative DNA transfer family protein
COORDINATES: similar to AA sequence:RefSeq:WP_002846006.1
zincin-like metallopeptidase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_002844662.1
COORDINATES: similar to AA sequence:RefSeq:WP_002907809.1
GO:0003697 - single-stranded DNA binding [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]; GO:0006260 - DNA replication [Evidence IEA]; GO:0006351 - DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002846004.1
lytic transglycosylase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_002797794.1
COORDINATES: similar to AA sequence:RefSeq:WP_002779806.1
COORDINATES: similar to AA sequence:RefSeq:WP_002841939.1
GO:0009291 - unidirectional conjugation [Evidence IEA]
P-type conjugative transfer protein TrbG
COORDINATES: similar to AA sequence:RefSeq:WP_002907783.1
COORDINATES: similar to AA sequence:RefSeq:WP_002838802.1
P-type conjugative transfer protein TrbL
COORDINATES: similar to AA sequence:RefSeq:WP_019109042.1
COORDINATES: similar to AA sequence:RefSeq:WP_002842176.1
P-type conjugative transfer protein TrbJ
COORDINATES: similar to AA sequence:RefSeq:WP_002815581.1
COORDINATES: similar to AA sequence:RefSeq:WP_002779815.1
TrbM/KikA/MpfK family conjugal transfer protein