Glutamicibacter halophytocola strain KLBMP 5180 plasmid pKLBMP5180, complete sequence.
type: Entry
definition: Glutamicibacter halophytocola strain KLBMP 5180 plasmid pKLBMP5180, complete sequence.
sequence version: NZ_CP012751.1
sequence date: 2023-02-05
sequence: sequence
division: CON
label: NZ_CP012751.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN03840760
keyword: RefSeq
source: Glutamicibacter halophytocola
organism: Glutamicibacter halophytocola
taxonomy: Bacteria; Actinomycetota; Actinomycetes; Micrococcales; Micrococcaceae; Glutamicibacter.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP012751.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: DEC-2014\nAssembly Method :: Celera Assembler v. 8.2\nAssembly Name :: KLBMP5180\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 100.0x\nSequencing Technology :: Illumina MiSeq; PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/05/2023 18:47:48\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,658\nCDSs (total) :: 3,572\nGenes (coding) :: 3,557\nCDSs (with protein) :: 3,557\nGenes (RNA) :: 86\nrRNAs :: 7, 6, 6 (5S, 16S, 23S)\ncomplete rRNAs :: 7, 6, 6 (5S, 16S, 23S)\ntRNAs :: 64\nncRNAs :: 3\nPseudo Genes (total) :: 15\nCDSs (without protein) :: 15\nPseudo Genes (ambiguous residues) :: 0 of 15\nPseudo Genes (frameshifted) :: 3 of 15\nPseudo Genes (incomplete) :: 9 of 15\nPseudo Genes (internal stop) :: 5 of 15\nPseudo Genes (multiple problems) :: 2 of 15\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 6626
topology: circular
so has quality: SO_0000988
location: 1..6626
location: region:1-6626:1
RO_0002162: 1933880

NZ_CP012751
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN03840760
type: BioSample
SIO_000068: biosample

1
title: Genome sequencing of Arthrobacter sp.
author: Qin, S.
author: Xing, K.
journal: Unpublished

2
title: Direct Submission
author: Qin, S.
author: Xing, K.
journal: Submitted (09-JUL-2015) The Key Lab of Biotechnology for Medicinal Plants of Jiangsu Province, Jiangsu Normal University, No.101 Shanghai Road, Xuzhou, Jiangsu 210000, China

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6626:1
position: 6626
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-6626:1:source
so part of: sequence
organism: Glutamicibacter halophytocola
mol type: genomic DNA
strain: KLBMP 5180
isolation source: Inner tissues of halophyte Limonium sinense (Girard) Kuntze
type material: type strain of Glutamicibacter halophytocola
plasmid: pKLBMP5180
country: China:Jiangsu
collection date: 2014-01-01

1933880
type: Taxonomy
SIO_000068: taxonomy

AOZ07_RS17965
type: Gene
subclass of: SO_0000704
RO_0002162: 1933880
locus tag: AOZ07_RS17965
old locus tag: AOZ07_17960
so part of: sequence
location: join(6359..6626,1..431)
location: region:1-6626:1
so has part: feature:6359-6626:1:exon
so has part: feature:1-431:1:exon
subclass of: SO_0000010

urn:…
SIO_000300: 1
SIO_000628: feature:6359-6626:1:exon

position:6359:1
position: 6359
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1-431:1:exon

position:431:1
position: 431
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

AOZ07_RS17965
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1933880
locus tag: AOZ07_RS17965
old locus tag: AOZ07_17960
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013347356.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO process: GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MKDAQSGPLKIAGYVRVSTDKQDISPEVQRAALEREALLKGYELTLVEELAVSAATVTKRPLMQQLLAALKDGSFDGLMVAKLDRLSRSMEDGTRILADSQRQGWRIICLDLGVDTATVMGAGLFNMALNFAEIERKLIGKRTSEAMQQKAADGQHMGRVSVLPHAVMLRIHDLHRGGLSLRQIVERLEAEQVPTARGGRWHASTVRSVLSSVTLQRLLDDSSIAPREAIEA
SIO_010081: AOZ07_RS17965
subclass of: SO_0000673
so part of: AOZ07_RS17965
location: join(6359..6626,1..431)
location: region:1-6626:1
so has part: feature:6359-6626:1:exon
so has part: feature:1-431:1:exon

WP_060703574.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6359-6626:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1-431:1:exon

AOZ07_RS17970
type: Gene
subclass of: SO_0000704
RO_0002162: 1933880
locus tag: AOZ07_RS17970
old locus tag: AOZ07_17965
so part of: sequence
location: complement(1747..2112)
location: region:1747-2112:-1
so has part: feature:1747-2112:-1:exon
subclass of: SO_0000010

position:1747:-1
position: 1747
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2112:-1
position: 2112
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1747-2112:-1:exon

AOZ07_RS17970
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1933880
locus tag: AOZ07_RS17970
old locus tag: AOZ07_17965
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MQNEGMFGMSAGLKITVSACFTVGSIFTGANGLTVVSLIAALAAVVSGVMAVAEVSREANKAGFILGIVASVISVMGTAFVLTASATLPFAITAGIALVPVLLWIALAVVHSKAGGAKALS
SIO_010081: AOZ07_RS17970
subclass of: SO_0000673
so part of: AOZ07_RS17970
location: complement(1747..2112)
location: region:1747-2112:-1
so has part: feature:1747-2112:-1:exon

WP_236995346.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1747-2112:-1:exon

AOZ07_RS17975
type: Gene
subclass of: SO_0000704
RO_0002162: 1933880
locus tag: AOZ07_RS17975
old locus tag: AOZ07_17970
so part of: sequence
location: complement(2140..2700)
location: region:2140-2700:-1
so has part: feature:2140-2700:-1:exon
subclass of: SO_0000010

position:2140:-1
position: 2140
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2700:-1
position: 2700
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2140-2700:-1:exon

AOZ07_RS17975
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1933880
locus tag: AOZ07_RS17975
old locus tag: AOZ07_17970
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013347353.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKNKFVNASIAAVLACGLTFTALPASASTPAQLKPGAATVANESVSDAEVDKLAKDLEALFTHGITQNEDGSFRVDEKSIIEHFGEVEGKQIIAQFRAQVPQTHIGNIPVASAASYGQCVLNFTGFGALFGASEGTILGYINRKDWNKAAQTMVKFLGKQAVKGGVVGLAASLAAAGAWCATPWAK
SIO_010081: AOZ07_RS17975
subclass of: SO_0000673
so part of: AOZ07_RS17975
location: complement(2140..2700)
location: region:2140-2700:-1
so has part: feature:2140-2700:-1:exon

WP_060703569.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2140-2700:-1:exon

AOZ07_RS17980
type: Gene
subclass of: SO_0000704
RO_0002162: 1933880
gene: mobC
locus tag: AOZ07_RS17980
old locus tag: AOZ07_17975
so part of: sequence
location: 3237..3722
location: region:3237-3722:1
so has part: feature:3237-3722:1:exon
subclass of: SO_0000010

position:3237:1
position: 3237
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3722:1
position: 3722
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3237-3722:1:exon

AOZ07_RS17980
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1933880
gene: mobC
locus tag: AOZ07_RS17980
old locus tag: AOZ07_17975
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013347351.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid mobilization relaxosome protein MobC
translation: MALFSRKKTPAPARPRNPFVETPEQEAARREREAAEAAAAEASRVVYEPRKGGRPTVENPRTKRVSLSLSDQEHETLVAAAEGQRVSVWAREVLLDRLDTSEVSHIPGEVARLRADLGRVGSNLNQLVRAVNSGQTVSSAELLEAVEATREELARVRGELP
SIO_010081: AOZ07_RS17980
subclass of: SO_0000673
so part of: AOZ07_RS17980
location: 3237..3722
location: region:3237-3722:1
so has part: feature:3237-3722:1:exon

WP_060703570.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3237-3722:1:exon

AOZ07_RS17985
type: Gene
subclass of: SO_0000704
RO_0002162: 1933880
locus tag: AOZ07_RS17985
old locus tag: AOZ07_17980
so part of: sequence
location: 3719..4471
location: region:3719-4471:1
so has part: feature:3719-4471:1:exon
subclass of: SO_0000010

position:3719:1
position: 3719
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4471:1
position: 4471
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3719-4471:1:exon

AOZ07_RS17985
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1933880
locus tag: AOZ07_RS17985
old locus tag: AOZ07_17980
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013347350.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: relaxase/mobilization nuclease domain-containing protein
translation: MIAKITRGKNPGDIGAYLHGPGKANEHTYTAAGQRVSGGVVVGSNIGAEGQTDPRWWAGELRKALNTRPEIKNPVWHASLRNTKEDRTLSNEQWADIGQSFAEDMGYAEHPWVMVRHGDDHVHIVVSRVDDVGEVWHARNDRRVAQTACTKLEKAYGLEAAPRRREQAKQPVLVERDKARFKTQQVASQREQKEREAHEATKKAAQRAKWRDASFPNPPTTRSSLSTAGKRTKKYTAPQIHPSRDEGYER
SIO_010081: AOZ07_RS17985
subclass of: SO_0000673
so part of: AOZ07_RS17985
location: 3719..4471
location: region:3719-4471:1
so has part: feature:3719-4471:1:exon

WP_060703571.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3719-4471:1:exon

AOZ07_RS17990
type: Gene
subclass of: SO_0000704
RO_0002162: 1933880
locus tag: AOZ07_RS17990
old locus tag: AOZ07_17985
so part of: sequence
location: 4485..5282
location: region:4485-5282:1
so has part: feature:4485-5282:1:exon
subclass of: SO_0000010

position:4485:1
position: 4485
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5282:1
position: 5282
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4485-5282:1:exon

AOZ07_RS17990
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1933880
locus tag: AOZ07_RS17990
old locus tag: AOZ07_17985
inference: COORDINATES: protein motif:HMM:NF021640.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: nucleotide-binding protein
translation: MDYRRKIELLQDQIDEAAAGTPRNFDEWSNNTEVVLRTVFGELGNTYLKFKKVRFSPGVITSSTNFEAYRRKGVLETIALLKSAQREVELMEELQKNQIAEEVEKTIEVTDKGAGKDQRIFIVHGHDDAKKYELARFLSNLTGHEPVILHEQPNKGSVLIQKLEANAQKTGFAVVLLTADDEGKDKRDSDYRPRARQNVVFELGFFIAALGRENVAVLMEDGVEEPGDVTGLVYTPLDPAGAWKTSIAIEIEESGIPVRWTALRR
SIO_010081: AOZ07_RS17990
subclass of: SO_0000673
so part of: AOZ07_RS17990
location: 4485..5282
location: region:4485-5282:1
so has part: feature:4485-5282:1:exon

WP_060703572.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4485-5282:1:exon

AOZ07_RS17995
type: Gene
subclass of: SO_0000704
RO_0002162: 1933880
locus tag: AOZ07_RS17995
old locus tag: AOZ07_17990
so part of: sequence
location: 5348..5887
location: region:5348-5887:1
so has part: feature:5348-5887:1:exon
subclass of: SO_0000010

position:5348:1
position: 5348
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5887:1
position: 5887
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5348-5887:1:exon

AOZ07_RS17995
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1933880
locus tag: AOZ07_RS17995
old locus tag: AOZ07_17990
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSDTSEKFQQAGKIIRKVWKRSAHRVGGVILFLLALSTTIYTAANASREEPPTSEFSVLLVLLAGAFQLGSIALFSRSGRPDDTHSEASVRRLVNLTYRTQDLSNSAQEAKGMDVATMRSALLDLSARLNYIAEDTLASVEDWTSFNGAAERKVKELNQEARQMREEEITNEENRNAAN
SIO_010081: AOZ07_RS17995
subclass of: SO_0000673
so part of: AOZ07_RS17995
location: 5348..5887
location: region:5348-5887:1
so has part: feature:5348-5887:1:exon

WP_060703573.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5348-5887:1:exon

AOZ07_RS18925
type: Gene
subclass of: SO_0000704
RO_0002162: 1933880
locus tag: AOZ07_RS18925
so part of: sequence
location: 5874..6311
location: region:5874-6311:1
so has part: feature:5874-6311:1:exon
subclass of: SO_0000010

position:5874:1
position: 5874
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6311:1
position: 6311
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5874-6311:1:exon

AOZ07_RS18925
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1933880
locus tag: AOZ07_RS18925
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MQPIEAKVAQVISERDLAINRGSSAGVEVGMRFKILSSEPAEIRDPDTDEVLGKVEISKVEVEVVSVQPTLAVCRTFKKIVLPGKPKRTGIASPYSSLRESIFGDIGTPDKERYQTLRSDESFVVNELDPNGSFVKRGDRAIQLV
SIO_010081: AOZ07_RS18925
subclass of: SO_0000673
so part of: AOZ07_RS18925
location: 5874..6311
location: region:5874-6311:1
so has part: feature:5874-6311:1:exon

WP_194943871.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5874-6311:1:exon