Haloarcula taiwanensis strain Taiwanensis plasmid pNYT2, complete sequence.
Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Halobacteriales; Haloarculaceae; Haloarcula.
A Red Light-Sensitive Sensory Rhodopsin I From Haloarcula taiwanensis, A New Haloarchaeon Isolated From Taiwan
Submitted (04-JAN-2017) Department of Biochemical Science and Technology, National Taiwan University, No. 1, Sec. 4, Roosevelt Road, Taipei 10617, Taiwan
REFSEQ INFORMATION: The reference sequence is identical to\nCP019157.1.\nBacteria and source DNA available from Chii-Shen Yang, NTU.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 26-DEC-2016\nAssembly Method :: HGAP v. 2\nAssembly Name :: Haloarcula sp. Taiwanensis\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 85.0x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 01/01/2023 02:43:28\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,807\nCDSs (total) :: 3,751\nGenes (coding) :: 3,729\nCDSs (with protein) :: 3,729\nGenes (RNA) :: 56\nrRNAs :: 3, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 2, 2 (5S, 16S, 23S)\ntRNAs :: 47\nncRNAs :: 2\nPseudo Genes (total) :: 22\nCDSs (without protein) :: 22\nPseudo Genes (ambiguous residues) :: 0 of 22\nPseudo Genes (frameshifted) :: 11 of 22\nPseudo Genes (incomplete) :: 11 of 22\nPseudo Genes (internal stop) :: 6 of 22\nPseudo Genes (multiple problems) :: 6 of 22\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_011222125.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011222189.1
COORDINATES: similar to AA sequence:RefSeq:WP_011222188.1
COORDINATES: similar to AA sequence:RefSeq:WP_011222187.1
COORDINATES: similar to AA sequence:RefSeq:WP_004966316.1
COORDINATES: similar to AA sequence:RefSeq:WP_011222225.1
COORDINATES: similar to AA sequence:RefSeq:WP_011222224.1
COORDINATES: similar to AA sequence:RefSeq:WP_011222223.1
COORDINATES: similar to AA sequence:RefSeq:WP_018259342.1
COORDINATES: similar to AA sequence:RefSeq:WP_011222219.1
COORDINATES: similar to AA sequence:RefSeq:WP_007345868.1
COORDINATES: similar to AA sequence:RefSeq:WP_011222217.1
COORDINATES: similar to AA sequence:RefSeq:WP_011222129.1
COORDINATES: similar to AA sequence:RefSeq:WP_005533787.1
AbrB/MazE/SpoVT family DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011225016.1
COORDINATES: similar to AA sequence:RefSeq:WP_011222258.1
COORDINATES: similar to AA sequence:RefSeq:WP_004966299.1
COORDINATES: similar to AA sequence:RefSeq:WP_008313828.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_011222262.1
COORDINATES: similar to AA sequence:RefSeq:WP_004966820.1
COORDINATES: similar to AA sequence:RefSeq:WP_005532655.1
COORDINATES: protein motif:HMM:NF020436.2
COORDINATES: protein motif:HMM:NF016232.2
COORDINATES: similar to AA sequence:RefSeq:WP_004968198.1
COORDINATES: similar to AA sequence:RefSeq:WP_007189718.1
COORDINATES: similar to AA sequence:RefSeq:WP_007188968.1
COORDINATES: similar to AA sequence:RefSeq:WP_007188969.1
type II toxin-antitoxin system PemK/MazF family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_007189720.1
COORDINATES: similar to AA sequence:RefSeq:WP_020222658.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_015790009.1
ribbon-helix-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012807416.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011224970.1
COORDINATES: similar to AA sequence:RefSeq:WP_007344270.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
cytochrome d ubiquinol oxidase subunit II
COORDINATES: similar to AA sequence:RefSeq:WP_006651470.1
COORDINATES: similar to AA sequence:RefSeq:WP_014030649.1
COORDINATES: similar to AA sequence:RefSeq:WP_004598452.1
COORDINATES: protein motif:HMM:NF024777.2
LamG-like jellyroll fold domain-containing protein
COORDINATES: protein motif:HMM:NF015648.2
COORDINATES: protein motif:HMM:NF024753.2
PQQ-binding-like beta-propeller repeat protein
COORDINATES: similar to AA sequence:RefSeq:WP_011225053.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004966871.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004594981.1
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_004515811.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594983.1
COORDINATES: similar to AA sequence:RefSeq:WP_008311725.1
COORDINATES: similar to AA sequence:RefSeq:WP_007188052.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004966861.1
COORDINATES: similar to AA sequence:RefSeq:WP_014053455.1
COORDINATES: similar to AA sequence:RefSeq:WP_004965280.1
COORDINATES: similar to AA sequence:RefSeq:WP_008311452.1
COORDINATES: similar to AA sequence:RefSeq:WP_004966761.1
COORDINATES: similar to AA sequence:RefSeq:WP_011222291.1
COORDINATES: similar to AA sequence:RefSeq:WP_014030573.1
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF012492.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008313570.1
COORDINATES: similar to AA sequence:RefSeq:WP_014039080.1
COORDINATES: similar to AA sequence:RefSeq:WP_011222295.1
orc1/cdc6 family replication initiation protein
COORDINATES: similar to AA sequence:RefSeq:WP_011222296.1
COORDINATES: similar to AA sequence:RefSeq:WP_007189976.1
COORDINATES: similar to AA sequence:RefSeq:WP_011222140.1
COORDINATES: similar to AA sequence:RefSeq:WP_011222141.1
COORDINATES: similar to AA sequence:RefSeq:WP_011222200.1
COORDINATES: similar to AA sequence:RefSeq:WP_007189970.1
COORDINATES: similar to AA sequence:RefSeq:WP_007189968.1
COORDINATES: similar to AA sequence:RefSeq:WP_004592174.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060441.1
COORDINATES: similar to AA sequence:RefSeq:WP_007189808.1
COORDINATES: similar to AA sequence:RefSeq:WP_007190045.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF021134.2
GO:0016758 - hexosyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012659250.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF036897.2
COORDINATES: similar to AA sequence:RefSeq:WP_017343368.1
COORDINATES: similar to AA sequence:RefSeq:WP_011222123.1