Haloarcula taiwanensis strain Taiwanensis plasmid pNYT1, complete sequence.
Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Halobacteriales; Haloarculaceae; Haloarcula.
A Red Light-Sensitive Sensory Rhodopsin I From Haloarcula taiwanensis, A New Haloarchaeon Isolated From Taiwan
Submitted (04-JAN-2017) Department of Biochemical Science and Technology, National Taiwan University, No. 1, Sec. 4, Roosevelt Road, Taipei 10617, Taiwan
REFSEQ INFORMATION: The reference sequence is identical to\nCP019156.1.\nBacteria and source DNA available from Chii-Shen Yang, NTU.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 26-DEC-2016\nAssembly Method :: HGAP v. 2\nAssembly Name :: Haloarcula sp. Taiwanensis\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 85.0x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 01/01/2023 02:43:28\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,807\nCDSs (total) :: 3,751\nGenes (coding) :: 3,729\nCDSs (with protein) :: 3,729\nGenes (RNA) :: 56\nrRNAs :: 3, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 2, 2 (5S, 16S, 23S)\ntRNAs :: 47\nncRNAs :: 2\nPseudo Genes (total) :: 22\nCDSs (without protein) :: 22\nPseudo Genes (ambiguous residues) :: 0 of 22\nPseudo Genes (frameshifted) :: 11 of 22\nPseudo Genes (incomplete) :: 11 of 22\nPseudo Genes (internal stop) :: 6 of 22\nPseudo Genes (multiple problems) :: 6 of 22\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_008308636.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011222131.1
COORDINATES: similar to AA sequence:RefSeq:WP_004966493.1
COORDINATES: similar to AA sequence:RefSeq:WP_004966492.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_014030776.1
COORDINATES: similar to AA sequence:RefSeq:WP_014030996.1
COORDINATES: similar to AA sequence:RefSeq:WP_004966098.1
COORDINATES: similar to AA sequence:RefSeq:WP_007190014.1
orc1/cdc6 family replication initiation protein
COORDINATES: similar to AA sequence:RefSeq:WP_007190015.1
COORDINATES: similar to AA sequence:RefSeq:WP_007696293.1
COORDINATES: similar to AA sequence:RefSeq:WP_014030760.1
COORDINATES: similar to AA sequence:RefSeq:WP_004966089.1
COORDINATES: similar to AA sequence:RefSeq:WP_004966088.1
COORDINATES: similar to AA sequence:RefSeq:WP_007346227.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008418044.1
GO:0010181 - FMN binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
GO:0008150 - biological_process [Evidence IEA]
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008311926.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594722.1
GO:0008869 - galactonate dehydratase activity [Evidence IEA]
GO:0009063 - amino acid catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007190029.1
COORDINATES: similar to AA sequence:RefSeq:WP_007190030.1
COORDINATES: similar to AA sequence:RefSeq:WP_011222523.1
class II aldolase/adducin family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007190032.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC
COORDINATES: similar to AA sequence:RefSeq:WP_004965878.1
COORDINATES: similar to AA sequence:RefSeq:WP_009367769.1
COORDINATES: similar to AA sequence:RefSeq:WP_008311935.1
COORDINATES: similar to AA sequence:RefSeq:WP_011222518.1
COORDINATES: similar to AA sequence:RefSeq:WP_008311938.1
COORDINATES: similar to AA sequence:RefSeq:WP_008313671.1
COORDINATES: similar to AA sequence:RefSeq:WP_011225016.1
COORDINATES: similar to AA sequence:RefSeq:WP_007190825.1
COORDINATES: similar to AA sequence:RefSeq:WP_014030754.1
COORDINATES: similar to AA sequence:RefSeq:WP_004592168.1
COORDINATES: similar to AA sequence:RefSeq:WP_014030601.1
COORDINATES: similar to AA sequence:RefSeq:WP_007189814.1
COORDINATES: similar to AA sequence:RefSeq:WP_014030603.1
COORDINATES: similar to AA sequence:RefSeq:WP_006181788.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004965323.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015302002.1
nuclease-related domain-containing DEAD/DEAH box helicase
COORDINATES: similar to AA sequence:RefSeq:WP_014030747.1
COORDINATES: protein motif:HMM:NF012451.2
COORDINATES: similar to AA sequence:RefSeq:WP_008311410.1
COORDINATES: similar to AA sequence:RefSeq:WP_008313850.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594499.1
COORDINATES: similar to AA sequence:RefSeq:WP_014030631.1
COORDINATES: similar to AA sequence:RefSeq:WP_011222351.1
COORDINATES: similar to AA sequence:RefSeq:WP_004053502.1
COORDINATES: similar to AA sequence:RefSeq:WP_009762213.1
GO:0016779 - nucleotidyltransferase activity [Evidence IEA]
nucleotidyltransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004041337.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594410.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_005532744.1
COORDINATES: similar to AA sequence:RefSeq:WP_007189773.1
COORDINATES: similar to AA sequence:RefSeq:WP_008524242.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015911446.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004519 - endonuclease activity [Evidence IEA]
GO:0009307 - DNA restriction-modification system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005533610.1
type IV secretion system DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011222346.1
COORDINATES: similar to AA sequence:RefSeq:WP_007189762.1
COORDINATES: similar to AA sequence:RefSeq:WP_005533894.1
COORDINATES: similar to AA sequence:RefSeq:WP_014030731.1
COORDINATES: similar to AA sequence:RefSeq:WP_014030730.1
COORDINATES: similar to AA sequence:RefSeq:WP_005533891.1
COORDINATES: similar to AA sequence:RefSeq:WP_008313885.1
COORDINATES: similar to AA sequence:RefSeq:WP_005533600.1
COORDINATES: similar to AA sequence:RefSeq:WP_004965079.1
COORDINATES: similar to AA sequence:RefSeq:WP_011224149.1
COORDINATES: similar to AA sequence:RefSeq:WP_011224151.1
COORDINATES: similar to AA sequence:RefSeq:WP_004966039.1
COORDINATES: similar to AA sequence:RefSeq:WP_014053192.1
COORDINATES: similar to AA sequence:RefSeq:WP_004048679.1
type II restriction endonuclease subunit M
COORDINATES: similar to AA sequence:RefSeq:WP_006182387.1
COORDINATES: similar to AA sequence:RefSeq:WP_011222246.1
COORDINATES: similar to AA sequence:RefSeq:WP_004966031.1
COORDINATES: protein motif:HMM:NF036897.2
COORDINATES: similar to AA sequence:RefSeq:WP_004516098.1
PAS domain-containing sensor histidine kinase
COORDINATES: similar to AA sequence:RefSeq:WP_014030709.1
COORDINATES: similar to AA sequence:RefSeq:WP_008313500.1
COORDINATES: similar to AA sequence:RefSeq:WP_005533565.1
COORDINATES: similar to AA sequence:RefSeq:WP_004592324.1
ArdC-like ssDNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004966229.1
COORDINATES: similar to AA sequence:RefSeq:WP_004592326.1
COORDINATES: similar to AA sequence:RefSeq:WP_004966418.1
COORDINATES: similar to AA sequence:RefSeq:WP_005533556.1
COORDINATES: similar to AA sequence:RefSeq:WP_004966420.1
COORDINATES: similar to AA sequence:RefSeq:WP_014030695.1
COORDINATES: similar to AA sequence:RefSeq:WP_007188962.1
COORDINATES: similar to AA sequence:RefSeq:WP_008313416.1
COORDINATES: similar to AA sequence:RefSeq:WP_004966206.1
COORDINATES: similar to AA sequence:RefSeq:WP_004592340.1
COORDINATES: similar to AA sequence:RefSeq:WP_004966202.1
COORDINATES: similar to AA sequence:RefSeq:WP_004966200.1
COORDINATES: similar to AA sequence:RefSeq:WP_004966197.1
COORDINATES: similar to AA sequence:RefSeq:WP_004592346.1
COORDINATES: similar to AA sequence:RefSeq:WP_005533840.1
transcription initiation factor IIB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_004592348.1
COORDINATES: similar to AA sequence:RefSeq:WP_005533523.1
COORDINATES: similar to AA sequence:RefSeq:WP_004966173.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_008313955.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007188983.1
COORDINATES: similar to AA sequence:RefSeq:WP_004516568.1
COORDINATES: similar to AA sequence:RefSeq:WP_005532683.1
COORDINATES: protein motif:HMM:NF012955.2