Candidatus Enterovibrio luxaltus isolate CC26 plasmid pCC1, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Vibrionales; Vibrionaceae; Enterovibrio.
Ongoing Transposon-Mediated Genome Reduction in the Luminous Bacterial Symbionts of Deep-Sea Ceratioid Anglerfishes
Submitted (06-APR-2017) Microbiology, Cornell University, 123 Wing Dr, Ithaca, NY 14853, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP020661.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: discovar de novo v. August 2016\nGenome Coverage :: 16.0x\nSequencing Technology :: Illumina HiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/06/2023 06:52:21\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,019\nCDSs (total) :: 1,974\nGenes (coding) :: 1,371\nCDSs (with protein) :: 1,371\nGenes (RNA) :: 45\nrRNAs :: 2, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 1, 1 (5S, 16S, 23S)\ntRNAs :: 37\nncRNAs :: 4\nPseudo Genes (total) :: 603\nCDSs (without protein) :: 603\nPseudo Genes (ambiguous residues) :: 0 of 603\nPseudo Genes (frameshifted) :: 476 of 603\nPseudo Genes (incomplete) :: 263 of 603\nPseudo Genes (internal stop) :: 507 of 603\nPseudo Genes (multiple problems) :: 516 of 603\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_005502335.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
GO:0036211 - protein modification process [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
30S ribosomal protein S6--L-glutamate ligase
COORDINATES: similar to AA sequence:RefSeq:WP_017016211.1
succinylglutamate desuccinylase/aspartoacylase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_004418131.1
COORDINATES: similar to AA sequence:RefSeq:WP_011151599.1
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008989378.1
COORDINATES: similar to AA sequence:RefSeq:WP_005506827.1
endonuclease/exonuclease/phosphatase family protein
COORDINATES: protein motif:HMM:NF014667.2
COORDINATES: similar to AA sequence:RefSeq:WP_005596296.1
internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_076611161.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_002535758.1
GO:0008859 - exoribonuclease II activity [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]
GO:0006401 - RNA catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017003313.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_009385778.1
GO:0008782 - adenosylhomocysteine nucleosidase activity [Evidence IEA]; GO:0008930 - methylthioadenosine nucleosidase activity [Evidence IEA]
GO:0019509 - L-methionine salvage from methylthioadenosine [Evidence IEA]
5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase
COORDINATES: similar to AA sequence:RefSeq:WP_016768050.1
COORDINATES: similar to AA sequence:RefSeq:WP_016788365.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017012086.1
GO:0004067 - asparaginase activity [Evidence IEA]
GO:0006520 - amino acid metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017011722.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611744.1
COORDINATES: similar to AA sequence:RefSeq:WP_002542599.1
GO:0030253 - protein secretion by the type I secretion system [Evidence IEA]
HlyD family type I secretion periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_017003069.1
GO:0009279 - cell outer membrane [Evidence IEA]
GO:0015288 - porin activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016959916.1
COORDINATES: similar to AA sequence:RefSeq:WP_005534345.1
transglutaminase-like cysteine peptidase
COORDINATES: similar to AA sequence:RefSeq:WP_016959918.1
COORDINATES: similar to AA sequence:RefSeq:WP_005392130.1
COORDINATES: similar to AA sequence:RefSeq:WP_001118343.1
COORDINATES: protein motif:HMM:NF019530.2
conjugal transfer protein TraG N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF017892.2
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF014705.2
COORDINATES: similar to AA sequence:RefSeq:WP_011176793.1
DDE-type integrase/transposase/recombinase
COORDINATES: similar to AA sequence:RefSeq:WP_016959924.1
ParB N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_002542587.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012519685.1
COORDINATES: similar to AA sequence:RefSeq:WP_002536788.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF013390.2
COORDINATES: similar to AA sequence:RefSeq:WP_016960952.1
GO:0004764 - shikimate 3-dehydrogenase (NADP+) activity [Evidence IEA]
GO:0019632 - shikimate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017007948.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612302.1
COORDINATES: similar to AA sequence:RefSeq:WP_017017316.1
GO:0006629 - lipid metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017016034.1
internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017007762.1
COORDINATES: similar to AA sequence:RefSeq:WP_017420116.1
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
COORDINATES: similar to AA sequence:RefSeq:WP_002535889.1
GO:0004359 - glutaminase activity [Evidence IEA]; GO:0003952 - NAD+ synthase (glutamine-hydrolyzing) activity [Evidence IEA]; GO:0008795 - NAD+ synthase activity [Evidence IEA]
GO:0009435 - NAD biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016962514.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_076611745.1
COORDINATES: protein motif:HMM:NF025113.2
COORDINATES: similar to AA sequence:RefSeq:WP_017005547.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0008716 - D-alanine-D-alanine ligase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017011621.1
GO:0004802 - transketolase activity [Evidence IEA]
GO:0006098 - pentose-phosphate shunt [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017015721.1
COORDINATES: similar to AA sequence:RefSeq:WP_001913678.1
COORDINATES: similar to AA sequence:RefSeq:WP_011999057.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_005502555.1
COORDINATES: similar to AA sequence:RefSeq:WP_016959926.1
COORDINATES: similar to AA sequence:RefSeq:WP_005364224.1
glycine betaine/L-proline ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_017012346.1
proline/glycine betaine ABC transporter permease
COORDINATES: similar to AA sequence:RefSeq:WP_017006589.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_017015594.1
nicotinate-nicotinamide nucleotide adenylyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_011081279.1
GO:0008746 - NAD(P)+ transhydrogenase activity [Evidence IEA]
GO:1902600 - proton transmembrane transport [Evidence IEA]
Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_013867799.1
GO:0008750 - NAD(P)+ transhydrogenase (AB-specific) activity [Evidence IEA]; GO:0050661 - NADP binding [Evidence IEA]
Re/Si-specific NAD(P)(+) transhydrogenase subunit beta
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011261294.1
GO:0003746 - translation elongation factor activity [Evidence IEA]
GO:0006414 - translational elongation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016958303.1
COORDINATES: similar to AA sequence:RefSeq:WP_017009931.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017011097.1
COORDINATES: similar to AA sequence:RefSeq:WP_011791210.1
COORDINATES: similar to AA sequence:RefSeq:WP_011261012.1
GO:0008712 - ADP-glyceromanno-heptose 6-epimerase activity [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017009539.1
GO:0016746 - acyltransferase activity [Evidence IEA]
GO:0009245 - lipid A biosynthetic process [Evidence IEA]
LpxM is lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase, an enzyme characterized in Escherichia coli and involved in biosynthesis of the form of lipid A found in that species and some closely related species; Derived by automated computational analysis using gene prediction method: Protein Homology.
lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_076611743.1
COORDINATES: similar to AA sequence:RefSeq:WP_017007890.1
pyrimidine/purine nucleoside phosphorylase
COORDINATES: similar to AA sequence:RefSeq:WP_076611746.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_016962430.1
COORDINATES: similar to AA sequence:RefSeq:WP_017052798.1
GO:0005525 - GTP binding [Evidence IEA]; GO:0003924 - GTPase activity [Evidence IEA]
GO:0042254 - ribosome biogenesis [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012129834.1
COORDINATES: similar to AA sequence:RefSeq:WP_017010274.1
GO:0033816 - diaminobutyrate acetyltransferase activity [Evidence IEA]
GO:0019491 - ectoine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019283090.1
GO:0045303 - diaminobutyrate-2-oxoglutarate transaminase activity [Evidence IEA]
diaminobutyrate--2-oxoglutarate transaminase
COORDINATES: similar to AA sequence:RefSeq:WP_017023939.1
GO:0033990 - ectoine synthase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017015591.1
1-acyl-sn-glycerol-3-phosphate acyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_075985013.1
COORDINATES: similar to AA sequence:RefSeq:WP_017015541.1
GO:0015297 - antiporter activity [Evidence IEA]
GO:0006814 - sodium ion transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017011106.1
cytidine/deoxycytidylate deaminase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_017016473.1
COORDINATES: similar to AA sequence:RefSeq:WP_017014798.1