Streptomyces nigrescens strain DSM 40276 plasmid phiDSM40276.
Bacteria; Actinomycetota; Actinomycetes; Kitasatosporales; Streptomycetaceae; Streptomyces.
Submitted (08-DEC-2022) CeBiTec, Bielefeld University, Sequenz 1, Bielefeld, NRW 33615, Germany
REFSEQ INFORMATION: The reference sequence is identical to\nCP114204.1.\nBacteria and source DNA available from DSM 40276.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 02-MAR-2022\nAssembly Method :: flye v. 2.9; Newbler v. 2.8\nAssembly Name :: DSM40276_v1\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 217.0x\nSequencing Technology :: Oxford Nanopore GridION; Illumina MiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/02/2023 12:55:10\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 8,250\nCDSs (total) :: 8,159\nGenes (coding) :: 7,919\nCDSs (with protein) :: 7,919\nGenes (RNA) :: 91\nrRNAs :: 7, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 7, 7, 7 (5S, 16S, 23S)\ntRNAs :: 67\nncRNAs :: 3\nPseudo Genes (total) :: 240\nCDSs (without protein) :: 240\nPseudo Genes (ambiguous residues) :: 0 of 240\nPseudo Genes (frameshifted) :: 89 of 240\nPseudo Genes (incomplete) :: 199 of 240\nPseudo Genes (internal stop) :: 21 of 240\nPseudo Genes (multiple problems) :: 64 of 240\n##Genome-Annotation-Data-END##
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_016644725.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018561693.1
COORDINATES: similar to AA sequence:RefSeq:WP_019054998.1
GO:0004519 - endonuclease activity [Evidence IEA]
HNH endonuclease signature motif containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015611713.1
PBSX family phage terminase large subunit
COORDINATES: similar to AA sequence:RefSeq:WP_009713707.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_016644731.1
COORDINATES: similar to AA sequence:RefSeq:WP_016644734.1
COORDINATES: protein motif:HMM:TIGR00616.1
GO:0006259 - DNA metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR03033.1
COORDINATES: similar to AA sequence:RefSeq:WP_020135125.1
COORDINATES: protein motif:HMM:NF012464.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017240229.1
COORDINATES: similar to AA sequence:RefSeq:WP_008415294.1
COORDINATES: similar to AA sequence:RefSeq:WP_007514906.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:0003824 - catalytic activity [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010351117.1
COORDINATES: similar to AA sequence:RefSeq:WP_010351118.1