Sulfitobacter alexandrii strain AM1-D1 plasmid unnamed1, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodobacterales; Roseobacteraceae; Sulfitobacter.
Complete genome sequence of Sulfitobacter sp. AM1-D1, a toxic bacteria associated with marine dinoflagellate Alexandrium minutum in East China Sea
Submitted (16-NOV-2016) Marine Natural Products, East China Sea Fisheries Research Institute, 300, Jungong Rd., Shanghai 200090, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP018077.1.\nBacteria and source DNA available from cuture of a marine\ndinoflagellate Alexandrium minutum.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 2016\nAssembly Method :: SOAPdenovo v. 2.04\nAssembly Name :: Sulfitobacter sp. AM1-D1\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 280.0x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/06/2023 02:44:09\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,592\nCDSs (total) :: 4,538\nGenes (coding) :: 4,464\nCDSs (with protein) :: 4,464\nGenes (RNA) :: 54\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 45\nncRNAs :: 3\nPseudo Genes (total) :: 74\nCDSs (without protein) :: 74\nPseudo Genes (ambiguous residues) :: 0 of 74\nPseudo Genes (frameshifted) :: 52 of 74\nPseudo Genes (incomplete) :: 27 of 74\nPseudo Genes (internal stop) :: 2 of 74\nPseudo Genes (multiple problems) :: 6 of 74\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
cell culture of Alexandrium minutum 1089
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF024109.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014763232.1
xanthine dehydrogenase family protein molybdopterin-binding subunit
COORDINATES: similar to AA sequence:RefSeq:WP_018698447.1
COORDINATES: protein motif:HMM:NF013134.2
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009572133.1
COORDINATES: similar to AA sequence:RefSeq:WP_009467730.1
sugar ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_019963367.1
TMAO reductase system periplasmic protein TorT
COORDINATES: similar to AA sequence:RefSeq:WP_011536872.1
biotin-dependent carboxyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014189240.1
COORDINATES: similar to AA sequence:RefSeq:WP_015498548.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016874 - ligase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
acetyl-CoA carboxylase biotin carboxylase subunit
COORDINATES: similar to AA sequence:RefSeq:WP_005613857.1
GO:0009317 - acetyl-CoA carboxylase complex [Evidence IEA]
GO:0003989 - acetyl-CoA carboxylase activity [Evidence IEA]
GO:0006633 - fatty acid biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012042630.1
COORDINATES: similar to AA sequence:RefSeq:WP_009467723.1
COORDINATES: similar to AA sequence:RefSeq:WP_019516321.1
COORDINATES: similar to AA sequence:RefSeq:WP_014200218.1
tripartite tricarboxylate transporter permease
COORDINATES: protein motif:HMM:NF018979.2
tripartite tricarboxylate transporter TctB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014200216.1
tripartite tricarboxylate transporter substrate binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_007816310.1
COORDINATES: similar to AA sequence:RefSeq:WP_011747344.1
COORDINATES: similar to AA sequence:RefSeq:WP_010440054.1
LacI family DNA-binding transcriptional regulator
COORDINATES: protein motif:HMM:NF012503.2
aminotransferase class V-fold PLP-dependent enzyme
COORDINATES: protein motif:HMM:NF019349.2
COORDINATES: similar to AA sequence:RefSeq:WP_019936913.1
COORDINATES: similar to AA sequence:RefSeq:WP_008168893.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA]
GO:0015837 - amine transport [Evidence IEA]
The N-terminal region of this protein, as described by TIGR01726, is a three transmembrane segment that identifies a subfamily of ABC transporter permease subunits, which specificities that include histidine, arginine, glutamine, glutamate, L-cystine (sic), the opines (in Agrobacterium) octopine and nopaline, etc.; The N-terminal region of this protein, as described by TIGR01726, is a three transmembrane segment that identifies a subfamily of ABC transporter permease subunits, which specificities that include histidine, arginine, glutamine, glutamate, L-cystine (sic), the opines (in Agrobacterium) octopine and nopaline, etc; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF012707.2
amino acid ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_007253554.1
GO:0045027 - DNA end binding [Evidence IEA]
GO:0006303 - double-strand break repair via nonhomologous end joining [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018301946.1
COORDINATES: protein motif:HMM:TIGR00685.1
GO:0004805 - trehalose-phosphatase activity [Evidence IEA]
GO:0005992 - trehalose biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018918118.1
COORDINATES: similar to AA sequence:RefSeq:WP_018304146.1
COORDINATES: similar to AA sequence:RefSeq:WP_009803812.1
pyrroloquinoline quinone-dependent dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_009824256.1
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017928411.1
COORDINATES: similar to AA sequence:RefSeq:WP_009807071.1
COORDINATES: similar to AA sequence:RefSeq:WP_017928409.1
GO:0004129 - cytochrome-c oxidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007120135.1
COORDINATES: similar to AA sequence:RefSeq:WP_009570200.1
GO:0051920 - peroxiredoxin activity [Evidence IEA]
carboxymuconolactone decarboxylase family protein
COORDINATES: protein motif:HMM:NF013434.2
COORDINATES: similar to AA sequence:RefSeq:WP_008942916.1
COORDINATES: similar to AA sequence:RefSeq:WP_010926599.1
COORDINATES: protein motif:HMM:NF024808.2
COORDINATES: similar to AA sequence:RefSeq:WP_012241914.1
COORDINATES: similar to AA sequence:RefSeq:WP_008942920.1
COORDINATES: similar to AA sequence:RefSeq:WP_008942918.1
COORDINATES: protein motif:HMM:NF013584.2
COORDINATES: protein motif:HMM:NF015431.2
LysR substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015040762.1
COORDINATES: similar to AA sequence:RefSeq:WP_020594162.1
COORDINATES: similar to AA sequence:RefSeq:WP_007681094.1
COORDINATES: similar to AA sequence:RefSeq:WP_008945937.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_013045925.1
COORDINATES: protein motif:HMM:NF019474.2
COORDINATES: similar to AA sequence:RefSeq:WP_011395405.1
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005605865.1
COORDINATES: similar to AA sequence:RefSeq:WP_018689545.1
COORDINATES: similar to AA sequence:RefSeq:WP_005605855.1
COORDINATES: similar to AA sequence:RefSeq:WP_012178687.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC
COORDINATES: similar to AA sequence:RefSeq:WP_005863708.1
GO:0015794 - glycerol-3-phosphate transmembrane transport [Evidence IEA]
sn-glycerol-3-phosphate ABC transporter permease UgpE
COORDINATES: similar to AA sequence:RefSeq:WP_008226503.1
sn-glycerol-3-phosphate ABC transporter permease UgpA
COORDINATES: similar to AA sequence:RefSeq:WP_007257248.1
type II toxin-antitoxin system ParD family antitoxin
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_008758709.1
sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB
COORDINATES: similar to AA sequence:RefSeq:WP_015498685.1
COORDINATES: similar to AA sequence:RefSeq:WP_008562369.1
COORDINATES: similar to AA sequence:RefSeq:WP_007118306.1
COORDINATES: similar to AA sequence:RefSeq:WP_007118305.1
COORDINATES: protein motif:HMM:NF012235.2
COORDINATES: similar to AA sequence:RefSeq:WP_007118303.1
ATP-binding cassette domain-containing protein
COORDINATES: protein motif:HMM:NF012376.2
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024744.2
COORDINATES: similar to AA sequence:RefSeq:WP_008224892.1
GO:0005215 - transporter activity [Evidence IEA]
efflux RND transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_008598244.1
COORDINATES: similar to AA sequence:RefSeq:WP_009824261.1
DnaA N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008229542.1
COORDINATES: similar to AA sequence:RefSeq:WP_009824260.1
ParB N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF015445.2
TRAP transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_006297142.1
COORDINATES: protein motif:HMM:NF016200.2
COORDINATES: similar to AA sequence:RefSeq:WP_007671648.1
hydantoinase B/oxoprolinase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007671647.1
hydantoinase/oxoprolinase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011046857.1
COORDINATES: similar to AA sequence:RefSeq:WP_018185342.1
gamma-glutamyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_009803841.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009829587.1
substrate-binding domain-containing protein
COORDINATES: protein motif:HMM:NF013324.2
COORDINATES: similar to AA sequence:RefSeq:WP_008963948.1
COORDINATES: similar to AA sequence:RefSeq:WP_008208421.1
branched-chain amino acid ABC transporter permease
COORDINATES: similar to AA sequence:RefSeq:WP_009828869.1
COORDINATES: similar to AA sequence:RefSeq:WP_009803777.1
COORDINATES: similar to AA sequence:RefSeq:WP_009827708.1
COORDINATES: similar to AA sequence:RefSeq:WP_009803775.1
COORDINATES: similar to AA sequence:RefSeq:WP_020042543.1
COORDINATES: similar to AA sequence:RefSeq:WP_012078515.1
COORDINATES: similar to AA sequence:RefSeq:WP_009816149.1
COORDINATES: similar to AA sequence:RefSeq:WP_008189006.1
COORDINATES: similar to AA sequence:RefSeq:WP_017927904.1
GO:0046872 - metal ion binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
2Fe-2S iron-sulfur cluster-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_008599525.1
xanthine dehydrogenase family protein subunit M
COORDINATES: similar to AA sequence:RefSeq:WP_008230087.1
COORDINATES: similar to AA sequence:RefSeq:WP_011910853.1
type II toxin-antitoxin system CcdA family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_005848984.1
GO:0008657 - DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) inhibitor activity [Evidence IEA]
GO:0006276 - plasmid maintenance [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015498378.1
GO:0004853 - uroporphyrinogen decarboxylase activity [Evidence IEA]
GO:0006779 - porphyrin-containing compound biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008282440.1
GO:0004418 - hydroxymethylbilane synthase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009819261.1
GO:0003870 - 5-aminolevulinate synthase activity [Evidence IEA]
GO:0006783 - heme biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012180201.1
GO:0003674 - molecular_function [Evidence IEA]
GO:0015979 - photosynthesis [Evidence IEA]
putative photosynthetic complex assembly protein PuhE
COORDINATES: similar to AA sequence:RefSeq:WP_020042503.1
GO:0048529 - magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity [Evidence IEA]
GO:0015995 - chlorophyll biosynthetic process [Evidence IEA]
magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase
COORDINATES: similar to AA sequence:RefSeq:WP_009160697.1
COORDINATES: similar to AA sequence:RefSeq:WP_009159655.1
photosynthetic complex assembly protein PuhC
COORDINATES: similar to AA sequence:RefSeq:WP_019954340.1
GO:0030096 - plasma membrane-derived thylakoid photosystem II [Evidence IEA]
photosynthetic complex putative assembly protein PuhB
COORDINATES: similar to AA sequence:RefSeq:WP_020042507.1
GO:0019684 - photosynthesis, light reaction [Evidence IEA]
photosynthetic reaction center subunit H
COORDINATES: similar to AA sequence:RefSeq:WP_015920858.1
COORDINATES: similar to AA sequence:RefSeq:WP_020042509.1
GO:0046406 - magnesium protoporphyrin IX methyltransferase activity [Evidence IEA]
magnesium protoporphyrin IX methyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_012180193.1
ferredoxin:protochlorophyllide reductase (ATP-dependent) iron-sulfur ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_008232283.1
GO:0009058 - biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019954334.1
ferredoxin:protochlorophyllide reductase (ATP-dependent) subunit B
COORDINATES: similar to AA sequence:RefSeq:WP_009565672.1
GO:0016730 - oxidoreductase activity, acting on iron-sulfur proteins as donors [Evidence IEA]
ferredoxin:protochlorophyllide reductase (ATP-dependent) subunit N
COORDINATES: similar to AA sequence:RefSeq:WP_011841327.1
GO:0030494 - bacteriochlorophyll biosynthetic process [Evidence IEA]
2-vinyl bacteriochlorophyllide hydratase
COORDINATES: protein motif:HMM:NF014375.2
cobalamin B12-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008232288.1
GO:0010109 - regulation of photosynthesis [Evidence IEA]
COORDINATES: protein motif:HMM:NF025025.2
COORDINATES: protein motif:HMM:NF012678.2
COORDINATES: similar to AA sequence:RefSeq:WP_011569024.1
GO:0004370 - glycerol kinase activity [Evidence IEA]
GO:0006071 - glycerol metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005861097.1
COORDINATES: similar to AA sequence:RefSeq:WP_005852584.1
COORDINATES: similar to AA sequence:RefSeq:WP_007800054.1
COORDINATES: similar to AA sequence:RefSeq:WP_005861103.1
COORDINATES: similar to AA sequence:RefSeq:WP_008886971.1
COORDINATES: similar to AA sequence:RefSeq:WP_007802788.1
COORDINATES: similar to AA sequence:RefSeq:WP_007802789.1
COORDINATES: similar to AA sequence:RefSeq:WP_019956024.1
GO:0009331 - glycerol-3-phosphate dehydrogenase complex [Evidence IEA]
GO:0004368 - glycerol-3-phosphate dehydrogenase (quinone) activity [Evidence IEA]
GO:0006072 - glycerol-3-phosphate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007121271.1
DeoR/GlpR family DNA-binding transcription regulator
COORDINATES: similar to AA sequence:RefSeq:WP_020591889.1
COORDINATES: similar to AA sequence:RefSeq:WP_017776348.1
COORDINATES: similar to AA sequence:RefSeq:WP_006205066.1
fumarylacetoacetate hydrolase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006205065.1
COORDINATES: similar to AA sequence:RefSeq:WP_008225541.1
COORDINATES: similar to AA sequence:RefSeq:WP_011454453.1
COORDINATES: similar to AA sequence:RefSeq:WP_008282030.1
COORDINATES: similar to AA sequence:RefSeq:WP_007120022.1
COORDINATES: similar to AA sequence:RefSeq:WP_018689002.1
COORDINATES: similar to AA sequence:RefSeq:WP_018689003.1
COORDINATES: similar to AA sequence:RefSeq:WP_008197382.1
COORDINATES: similar to AA sequence:RefSeq:WP_005850674.1
COORDINATES: similar to AA sequence:RefSeq:WP_013984621.1
COORDINATES: similar to AA sequence:RefSeq:WP_002720442.1
COORDINATES: similar to AA sequence:RefSeq:WP_009828460.1
GO:0045550 - geranylgeranyl reductase activity [Evidence IEA]
GO:0030494 - bacteriochlorophyll biosynthetic process [Evidence IEA]; GO:0015995 - chlorophyll biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015920849.1
GO:0004452 - isopentenyl-diphosphate delta-isomerase activity [Evidence IEA]
GO:0008299 - isoprenoid biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008231899.1
GO:0008661 - 1-deoxy-D-xylulose-5-phosphate synthase activity [Evidence IEA]
GO:0009240 - isopentenyl diphosphate biosynthetic process [Evidence IEA]; GO:0008615 - pyridoxine biosynthetic process [Evidence IEA]; GO:0009228 - thiamine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009831073.1
COORDINATES: similar to AA sequence:RefSeq:WP_009159933.1
photosynthetic reaction center subunit M
COORDINATES: similar to AA sequence:RefSeq:WP_007206415.1
photosynthetic reaction center subunit L
COORDINATES: similar to AA sequence:RefSeq:WP_008028570.1
light-harvesting antenna LH1, alpha subunit
COORDINATES: similar to AA sequence:RefSeq:WP_009829744.1
light-harvesting antenna LH1, beta subunit
COORDINATES: similar to AA sequence:RefSeq:WP_019954420.1
GO:0030494 - bacteriochlorophyll biosynthetic process [Evidence IEA]; GO:0015979 - photosynthesis [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007814247.1
COORDINATES: similar to AA sequence:RefSeq:WP_019954418.1
COORDINATES: similar to AA sequence:RefSeq:WP_009157351.1
chlorophyllide a reductase iron protein subunit X
COORDINATES: similar to AA sequence:RefSeq:WP_013984570.1
chlorophyll synthesis pathway protein BchC
COORDINATES: similar to AA sequence:RefSeq:WP_009159398.1
GO:0008171 - O-methyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007206405.1
COORDINATES: similar to AA sequence:RefSeq:WP_012180169.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008280397.1
COORDINATES: similar to AA sequence:RefSeq:WP_009160520.1
COORDINATES: similar to AA sequence:RefSeq:WP_007814267.1
phytoene/squalene synthase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_009157934.1
COORDINATES: similar to AA sequence:RefSeq:WP_009160595.1
COORDINATES: similar to AA sequence:RefSeq:WP_013984560.1
GO:0010007 - magnesium chelatase complex [Evidence IEA]
GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0016851 - magnesium chelatase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009830369.1