Corynebacterium atypicum strain R2070 plasmid phiCATYP2070I, complete sequence.
Bacteria; Actinobacteria; Corynebacteriales; Corynebacteriaceae; Corynebacterium.
Mycolic Acid Biosynthesis Genes in the Genome Sequence of Corynebacterium atypicum DSM 44849
Submitted (17-JUL-2014) CeBiTec, Bielefeld University, Universitaetsstr. 27, Bielefeld, NRW 33615, Germany
REFSEQ INFORMATION: The reference sequence is identical to\nCP008945.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Newbler v. 2.8\nGenome Coverage :: 73.4x\nSequencing Technology :: Illumina\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/14/2022 11:17:29\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,161\nCDSs (total) :: 2,095\nGenes (coding) :: 1,996\nCDSs (with protein) :: 1,996\nGenes (RNA) :: 66\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 51\nncRNAs :: 3\nPseudo Genes (total) :: 99\nCDSs (without protein) :: 99\nPseudo Genes (ambiguous residues) :: 0 of 99\nPseudo Genes (frameshifted) :: 66 of 99\nPseudo Genes (incomplete) :: 30 of 99\nPseudo Genes (internal stop) :: 16 of 99\nPseudo Genes (multiple problems) :: 11 of 99\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_007000724.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004007594.1
COORDINATES: similar to AA sequence:RefSeq:WP_004007595.1
COORDINATES: similar to AA sequence:RefSeq:WP_004007598.1
GO:0008745 - N-acetylmuramoyl-L-alanine amidase activity [Evidence IEA]
GO:0009253 - peptidoglycan catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004010796.1
COORDINATES: similar to AA sequence:RefSeq:WP_004007600.1
COORDINATES: similar to AA sequence:RefSeq:WP_007000730.1
COORDINATES: similar to AA sequence:RefSeq:WP_007000731.1
COORDINATES: similar to AA sequence:RefSeq:WP_004007603.1
COORDINATES: similar to AA sequence:RefSeq:WP_004010802.1
COORDINATES: similar to AA sequence:RefSeq:WP_004010803.1
COORDINATES: similar to AA sequence:RefSeq:WP_004008482.1
COORDINATES: similar to AA sequence:RefSeq:WP_004007209.1
COORDINATES: similar to AA sequence:RefSeq:WP_007000738.1
COORDINATES: similar to AA sequence:RefSeq:WP_007000739.1
COORDINATES: similar to AA sequence:RefSeq:WP_004012028.1
COORDINATES: similar to AA sequence:RefSeq:WP_004012029.1
COORDINATES: similar to AA sequence:RefSeq:WP_004007609.1
GO:0016032 - viral process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013888907.1
GO:0044423 - virion component [Evidence IEA]
GO:0005198 - structural molecule activity [Evidence IEA]
GO:0019068 - virion assembly [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004012032.1
COORDINATES: similar to AA sequence:RefSeq:WP_004007612.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_004010816.1
COORDINATES: similar to AA sequence:RefSeq:WP_002536721.1
COORDINATES: similar to AA sequence:RefSeq:WP_004010819.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004010820.1
COORDINATES: similar to AA sequence:RefSeq:WP_004007199.1
GO:0008168 - methyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006680352.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007000749.1
GO:0004478 - methionine adenosyltransferase activity [Evidence IEA]
GO:0006556 - S-adenosylmethionine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002536726.1
COORDINATES: similar to AA sequence:RefSeq:WP_014304004.1
GO:0004519 - endonuclease activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004007626.1
COORDINATES: similar to AA sequence:RefSeq:WP_002531056.1
COORDINATES: similar to AA sequence:RefSeq:WP_004808638.1
COORDINATES: similar to AA sequence:RefSeq:WP_007000755.1
GO:0003896 - DNA primase activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004007630.1
COORDINATES: similar to AA sequence:RefSeq:WP_007000756.1
phage antirepressor KilAC domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004007187.1
COORDINATES: similar to AA sequence:RefSeq:WP_007000763.1
COORDINATES: similar to AA sequence:RefSeq:WP_014320607.1
COORDINATES: similar to AA sequence:RefSeq:WP_007000765.1
COORDINATES: similar to AA sequence:RefSeq:WP_013242309.1
COORDINATES: similar to AA sequence:RefSeq:WP_014304124.1
COORDINATES: similar to AA sequence:RefSeq:WP_004010837.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
sigma factor-like helix-turn-helix DNA-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_004010838.1
COORDINATES: similar to AA sequence:RefSeq:WP_004010839.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_004010840.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004519 - endonuclease activity [Evidence IEA]
GO:0006304 - DNA modification [Evidence IEA]
COORDINATES: protein motif:HMM:NF013579.2
COORDINATES: similar to AA sequence:RefSeq:WP_004010842.1
class I SAM-dependent DNA methyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_004010843.1
type II toxin-antitoxin system Phd/YefM family antitoxin