Nodularia spumigena UHCC 0039 plasmid pUHCC0039a, complete sequence.
Bacteria; Cyanobacteriota; Cyanophyceae; Nostocales; Aphanizomenonaceae; Nodularia.
Comparative genomics of the toxic Baltic Sea cyanobacteria Nodularia spumigena UHCC 0039 and its response on varying salinity
Submitted (08-MAR-2017) Department of Food and Environmental Science, Universtiy of Helsinki, Viikinkaari 9, Helsinki 00790, Finland
REFSEQ INFORMATION: The reference sequence is identical to\nCP020115.1.\nAnnotated using Prokka v1.12-beta, protein annotations were\ncorrected with KEGG Orthologs.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAB3 v. April-2016; Pilon v. 1.20\nGenome Coverage :: 145.0x\nSequencing Technology :: PacBio; Illumina\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/22/2023 14:58:15\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,721\nCDSs (total) :: 4,661\nGenes (coding) :: 4,517\nCDSs (with protein) :: 4,517\nGenes (RNA) :: 60\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 44\nncRNAs :: 4\nPseudo Genes (total) :: 144\nCDSs (without protein) :: 144\nPseudo Genes (ambiguous residues) :: 0 of 144\nPseudo Genes (frameshifted) :: 27 of 144\nPseudo Genes (incomplete) :: 123 of 144\nPseudo Genes (internal stop) :: 15 of 144\nPseudo Genes (multiple problems) :: 21 of 144\nCRISPR Arrays :: 3\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_017744046.1
GO:0005509 - calcium ion binding [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012408669.1
COORDINATES: similar to AA sequence:RefSeq:WP_015262446.1
COORDINATES: protein motif:HMM:NF033592.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019491046.1
COORDINATES: protein motif:HMM:NF024579.2
COORDINATES: similar to AA sequence:RefSeq:WP_015180559.1
COORDINATES: similar to AA sequence:RefSeq:WP_015079419.1
COORDINATES: similar to AA sequence:RefSeq:WP_008191111.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012168527.1
COORDINATES: similar to AA sequence:RefSeq:WP_015079421.1
COORDINATES: similar to AA sequence:RefSeq:WP_015079422.1
GO:0015036 - disulfide oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015210206.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012267174.1
COORDINATES: similar to AA sequence:RefSeq:WP_015079425.1
COORDINATES: similar to AA sequence:RefSeq:WP_015079426.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_042152754.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - DNA transposition [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006198501.1
type I restriction enzyme HsdR N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006198503.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006199037.1
COORDINATES: protein motif:HMM:NF012403.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0004386 - helicase activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012407920.1
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF017658.2
filamentous hemagglutinin N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF015803.2
ShlB/FhaC/HecB family hemolysin secretion/activation protein
COORDINATES: similar to AA sequence:RefSeq:WP_017804031.1
COORDINATES: similar to AA sequence:RefSeq:WP_006198855.1
COORDINATES: similar to AA sequence:RefSeq:WP_010999785.1
GO:0004672 - protein kinase activity [Evidence IEA]
GO:0006468 - protein phosphorylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010999783.1
COORDINATES: similar to AA sequence:RefSeq:WP_015214274.1
COORDINATES: similar to AA sequence:RefSeq:WP_012412964.1
COORDINATES: similar to AA sequence:RefSeq:WP_015116127.1
COORDINATES: similar to AA sequence:RefSeq:WP_012599508.1
COORDINATES: similar to AA sequence:RefSeq:WP_015197918.1
COORDINATES: similar to AA sequence:RefSeq:WP_017660445.1
COORDINATES: similar to AA sequence:RefSeq:WP_017307361.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006197196.1
COORDINATES: similar to AA sequence:RefSeq:WP_015177995.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
reverse transcriptase domain-containing protein
COORDINATES: protein motif:HMM:NF013395.2
COORDINATES: similar to AA sequence:RefSeq:WP_016876062.1
COORDINATES: similar to AA sequence:RefSeq:WP_011316627.1
COORDINATES: similar to AA sequence:RefSeq:WP_016873245.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_006198270.1
COORDINATES: protein motif:HMM:TIGR02937.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
sigma-70 family RNA polymerase sigma factor
COORDINATES: similar to AA sequence:RefSeq:WP_015213424.1
COORDINATES: similar to AA sequence:RefSeq:WP_006198069.1
COORDINATES: similar to AA sequence:RefSeq:WP_015186457.1
COORDINATES: similar to AA sequence:RefSeq:WP_010999751.1
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010999752.1
COORDINATES: similar to AA sequence:RefSeq:WP_016948704.1
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010994082.1
COORDINATES: protein motif:HMM:NF013793.2
COORDINATES: protein motif:HMM:NF014567.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0000156 - phosphorelay response regulator activity [Evidence IEA]; GO:0004673 - protein histidine kinase activity [Evidence IEA]
GO:0007165 - signal transduction [Evidence IEA]
HAMP domain-containing sensor histidine kinase
COORDINATES: similar to AA sequence:RefSeq:WP_010999772.1
COORDINATES: similar to AA sequence:RefSeq:WP_016948740.1
COORDINATES: similar to AA sequence:RefSeq:WP_017653111.1
COORDINATES: similar to AA sequence:RefSeq:WP_015217660.1
GO:0004519 - endonuclease activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015217661.1
COORDINATES: similar to AA sequence:RefSeq:WP_015217662.1
COORDINATES: similar to AA sequence:RefSeq:WP_015217663.1
COORDINATES: similar to AA sequence:RefSeq:WP_012412934.1
COORDINATES: similar to AA sequence:RefSeq:WP_016948773.1
GO:0000166 - nucleotide binding [Evidence IEA]
GO:0030541 - plasmid partitioning [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015211862.1
COORDINATES: similar to AA sequence:RefSeq:WP_015186128.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: protein motif:HMM:NF024367.2
COORDINATES: similar to AA sequence:RefSeq:WP_016953749.1
type IV secretion system DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011316319.1
COORDINATES: similar to AA sequence:RefSeq:WP_010999766.1
COORDINATES: protein motif:HMM:NF015688.2
COORDINATES: similar to AA sequence:RefSeq:WP_012413321.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413320.1
COORDINATES: similar to AA sequence:RefSeq:WP_010999762.1
COORDINATES: similar to AA sequence:RefSeq:WP_017314064.1
COORDINATES: similar to AA sequence:RefSeq:WP_010993859.1
COORDINATES: similar to AA sequence:RefSeq:WP_010999759.1