Vibrio coralliilyticus strain S2052 plasmid unnamed, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio.
Genome mining reveals unlocked bioactive potential of marine Gram-negative bacteria
Chemical interactions between Vibrio coralliilyticus and Photobacterium galatheae
Submitted (03-OCT-2020) Department of Bioengineering, Technical University of Denmark, Soltofds Plads, Lyngby 2800, Denmark
Submitted (04-FEB-2015) Department of Systems Biology, Denmark Technical University, Matematiktorvet Bldg 301, Kgs. Lyngby DK-2800, Denmark
REFSEQ INFORMATION: The reference sequence is identical to\nCP063053.1.\nBacteria and source DNA available from L. Gram.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 30-JAN-2020\nAssembly Method :: Unicycler v. January 2020\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 273.0x\nSequencing Technology :: Illumina HiSeq; Oxford Nanopore MinION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/13/2023 18:00:48\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,038\nCDSs (total) :: 4,914\nGenes (coding) :: 4,886\nCDSs (with protein) :: 4,886\nGenes (RNA) :: 124\nrRNAs :: 10, 9, 9 (5S, 16S, 23S)\ncomplete rRNAs :: 10, 9, 9 (5S, 16S, 23S)\ntRNAs :: 92\nncRNAs :: 4\nPseudo Genes (total) :: 28\nCDSs (without protein) :: 28\nPseudo Genes (ambiguous residues) :: 0 of 28\nPseudo Genes (frameshifted) :: 9 of 28\nPseudo Genes (incomplete) :: 17 of 28\nPseudo Genes (internal stop) :: 5 of 28\nPseudo Genes (multiple problems) :: 2 of 28\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_019274890.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_019274891.1
COORDINATES: similar to AA sequence:RefSeq:WP_019274892.1
COORDINATES: similar to AA sequence:RefSeq:WP_006958537.1
COORDINATES: similar to AA sequence:RefSeq:WP_019274894.1
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_005450025.1
COORDINATES: similar to AA sequence:RefSeq:WP_019274896.1
COORDINATES: protein motif:HMM:TIGR01643.1
COORDINATES: similar to AA sequence:RefSeq:WP_005397606.1
COORDINATES: similar to AA sequence:RefSeq:WP_004411610.1
zinc-binding alcohol dehydrogenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006958523.1
bile acid:sodium symporter family protein
COORDINATES: similar to AA sequence:RefSeq:WP_009841420.1
COORDINATES: protein motif:HMM:NF019310.2
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF014686.2
COORDINATES: protein motif:HMM:TIGR00745.1
COORDINATES: similar to AA sequence:RefSeq:WP_018007106.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019529200.1
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO:0008483 - transaminase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009021618.1
GO:0003864 - 3-methyl-2-oxobutanoate hydroxymethyltransferase activity [Evidence IEA]
GO:0015940 - pantothenate biosynthetic process [Evidence IEA]
3-methyl-2-oxobutanoate hydroxymethyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_008222365.1
GO:0009317 - acetyl-CoA carboxylase complex [Evidence IEA]
GO:0003989 - acetyl-CoA carboxylase activity [Evidence IEA]
GO:0006633 - fatty acid biosynthetic process [Evidence IEA]
acetyl-CoA carboxylase, carboxyltransferase subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_008222367.1
COORDINATES: protein motif:HMM:NF013786.2
GO:0008897 - holo-[acyl-carrier-protein] synthase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]
4'-phosphopantetheinyl transferase superfamily protein
COORDINATES: similar to AA sequence:RefSeq:WP_008222373.1
COORDINATES: protein motif:HMM:NF012711.2
amino acid adenylation domain-containing protein
COORDINATES: protein motif:HMM:NF012873.2
beta-ketoacyl synthase N-terminal-like domain-containing protein
COORDINATES: protein motif:HMM:NF019491.2
COORDINATES: protein motif:HMM:NF012337.2
COORDINATES: protein motif:HMM:NF019013.2
GO:0030638 - polyketide metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008222395.1
phenylalanine aminomutase (D-beta-phenylalanine forming)
COORDINATES: protein motif:HMM:NF019589.2
COORDINATES: protein motif:HMM:NF024950.2
COORDINATES: similar to AA sequence:RefSeq:WP_019278062.1
COORDINATES: similar to AA sequence:RefSeq:WP_006958517.1
COORDINATES: similar to AA sequence:RefSeq:WP_004733560.1
COORDINATES: similar to AA sequence:RefSeq:WP_005366213.1
COORDINATES: similar to AA sequence:RefSeq:WP_006958514.1
DUF6058 family natural product biosynthesis protein
COORDINATES: similar to AA sequence:RefSeq:WP_019278058.1
endonuclease/exonuclease/phosphatase family protein
COORDINATES: protein motif:HMM:NF012659.2
COORDINATES: similar to AA sequence:RefSeq:WP_006312612.1
COORDINATES: similar to AA sequence:RefSeq:WP_019278055.1
COORDINATES: similar to AA sequence:RefSeq:WP_019278054.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009843341.1
The SIMPL domain is named for its presence in mouse protein SIMPL (signalling molecule that associates with mouse pelle-like kinase). Bacterial member BP26, from Brucella, was shown to assemble into a channel-like structure, while YggE from E. coli has been associated with resistance to oxidative stress; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_019278052.1
COORDINATES: similar to AA sequence:RefSeq:WP_006958503.1
COORDINATES: similar to AA sequence:RefSeq:WP_019278049.1
COORDINATES: similar to AA sequence:RefSeq:WP_019278048.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_019278038.1
COORDINATES: similar to AA sequence:RefSeq:WP_006958493.1
COORDINATES: similar to AA sequence:RefSeq:WP_019278040.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
winged helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019278041.1
COORDINATES: similar to AA sequence:RefSeq:WP_019278042.1
COORDINATES: similar to AA sequence:RefSeq:WP_006958432.1
COORDINATES: similar to AA sequence:RefSeq:WP_004744029.1
COORDINATES: similar to AA sequence:RefSeq:WP_019278045.1
COORDINATES: similar to AA sequence:RefSeq:WP_019278046.1
COORDINATES: similar to AA sequence:RefSeq:WP_006958422.1
GO:0003333 - amino acid transmembrane transport [Evidence IEA]
aromatic amino acid transport family protein
COORDINATES: similar to AA sequence:RefSeq:WP_019274722.1
COORDINATES: similar to AA sequence:RefSeq:WP_006958799.1
COORDINATES: similar to AA sequence:RefSeq:WP_006958798.1
COORDINATES: similar to AA sequence:RefSeq:WP_004749117.1
COORDINATES: similar to AA sequence:RefSeq:WP_019277788.1
GO:0015288 - porin activity [Evidence IEA]
GO:0008643 - carbohydrate transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019277789.1
COORDINATES: similar to AA sequence:RefSeq:WP_019277790.1
COORDINATES: similar to AA sequence:RefSeq:WP_006958791.1
GO:0036361 - racemase activity, acting on amino acids and derivatives [Evidence IEA]
GO:0006807 - nitrogen compound metabolic process [Evidence IEA]
aspartate/glutamate racemase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006958788.1
COORDINATES: similar to AA sequence:RefSeq:WP_019274800.1
GO:0019239 - deaminase activity [Evidence IEA]
GO:0008152 - metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009722298.1
4-oxalocrotonate tautomerase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_019274803.1
peptide ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_019274805.1
transporter substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019274806.1
COORDINATES: similar to AA sequence:RefSeq:WP_006958775.1
3,4-dihydroxy-2-butanone-4-phosphate synthase
COORDINATES: similar to AA sequence:RefSeq:WP_019274808.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019274809.1
COORDINATES: similar to AA sequence:RefSeq:WP_006958767.1
COORDINATES: similar to AA sequence:RefSeq:WP_019274811.1
COORDINATES: similar to AA sequence:RefSeq:WP_019274813.1
COORDINATES: similar to AA sequence:RefSeq:WP_006958760.1
GO:0005576 - extracellular region [Evidence IEA]
GO:0051715 - cytolysis in another organism [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006958759.1
COORDINATES: similar to AA sequence:RefSeq:WP_006958758.1
COORDINATES: similar to AA sequence:RefSeq:WP_006958757.1
COORDINATES: similar to AA sequence:RefSeq:WP_019274815.1
COORDINATES: similar to AA sequence:RefSeq:WP_019274816.1
COORDINATES: similar to AA sequence:RefSeq:WP_004411780.1
COORDINATES: similar to AA sequence:RefSeq:WP_019274818.1
type II CAAX endopeptidase family protein
COORDINATES: protein motif:HMM:NF024322.2
TcdA/TcdB pore-forming domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019274820.1
COORDINATES: similar to AA sequence:RefSeq:WP_019274821.1
COORDINATES: similar to AA sequence:RefSeq:WP_019274823.1
COORDINATES: similar to AA sequence:RefSeq:WP_019274824.1
COORDINATES: similar to AA sequence:RefSeq:WP_019274825.1
isocitrate lyase/phosphoenolpyruvate mutase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_019274826.1
isoprenylcysteine carboxylmethyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_019274827.1
Crp/Fnr family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_005431340.1
COORDINATES: similar to AA sequence:RefSeq:WP_020196068.1
COORDINATES: protein motif:HMM:NF008686.0
cyclopropane fatty acyl phospholipid synthase
COORDINATES: similar to AA sequence:RefSeq:WP_019277171.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0003678 - DNA helicase activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016790698.1
COORDINATES: similar to AA sequence:RefSeq:WP_019277173.1
type IV conjugative transfer system pilin TraA
COORDINATES: similar to AA sequence:RefSeq:WP_019277174.1
type IV conjugative transfer system protein TraE
COORDINATES: protein motif:HMM:NF018311.2
type-F conjugative transfer system secretin TraK
COORDINATES: similar to AA sequence:RefSeq:WP_006958686.1
COORDINATES: similar to AA sequence:RefSeq:WP_019277164.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_019277157.1
COORDINATES: similar to AA sequence:RefSeq:WP_019277156.1
COORDINATES: similar to AA sequence:RefSeq:WP_005593289.1
COORDINATES: similar to AA sequence:RefSeq:WP_004744218.1
COORDINATES: similar to AA sequence:RefSeq:WP_004749455.1
COORDINATES: similar to AA sequence:RefSeq:WP_004744220.1
GO:0016684 - oxidoreductase activity, acting on peroxide as acceptor [Evidence IEA]; GO:0008379 - thioredoxin peroxidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004744221.1
COORDINATES: similar to AA sequence:RefSeq:WP_004744243.1
COORDINATES: protein motif:HMM:NF015431.2
LysR substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006958669.1
COORDINATES: similar to AA sequence:RefSeq:WP_006958667.1
COORDINATES: protein motif:HMM:NF012772.2
COORDINATES: similar to AA sequence:RefSeq:WP_004744222.1
COORDINATES: protein motif:HMM:NF012698.2
COORDINATES: protein motif:HMM:NF012245.2
COORDINATES: similar to AA sequence:RefSeq:WP_004736842.1
COORDINATES: similar to AA sequence:RefSeq:WP_006958665.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006958661.1
COORDINATES: similar to AA sequence:RefSeq:WP_019441116.1
COORDINATES: similar to AA sequence:RefSeq:WP_014976900.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014949971.1
COORDINATES: similar to AA sequence:RefSeq:WP_006881162.1
COORDINATES: similar to AA sequence:RefSeq:WP_012499450.1
COORDINATES: protein motif:HMM:NF025056.2
toll/interleukin-1 receptor domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_003004856.1
COORDINATES: similar to AA sequence:RefSeq:WP_019827560.1
COORDINATES: similar to AA sequence:RefSeq:WP_013857457.1
COORDINATES: similar to AA sequence:RefSeq:WP_019277087.1
COORDINATES: similar to AA sequence:RefSeq:WP_005378524.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012841693.1
COORDINATES: similar to AA sequence:RefSeq:WP_010650979.1
glyoxalase/bleomycin resistance/dioxygenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010448902.1
COORDINATES: similar to AA sequence:RefSeq:WP_019274852.1
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019274853.1
COORDINATES: similar to AA sequence:RefSeq:WP_012841730.1
COORDINATES: similar to AA sequence:RefSeq:WP_019274857.1
COORDINATES: similar to AA sequence:RefSeq:WP_014231925.1
COORDINATES: protein motif:HMM:NF012905.2
COORDINATES: similar to AA sequence:RefSeq:WP_006958608.1
COORDINATES: similar to AA sequence:RefSeq:WP_005431530.1
glutathione S-transferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_017068152.1
COORDINATES: similar to AA sequence:RefSeq:WP_005377819.1
COORDINATES: similar to AA sequence:RefSeq:WP_000154972.1
COORDINATES: similar to AA sequence:RefSeq:WP_005398652.1
COORDINATES: protein motif:HMM:NF018684.2
COORDINATES: similar to AA sequence:RefSeq:WP_017041374.1
COORDINATES: similar to AA sequence:RefSeq:WP_005536567.1
COORDINATES: similar to AA sequence:RefSeq:WP_019274860.1
COORDINATES: similar to AA sequence:RefSeq:WP_010646964.1
COORDINATES: similar to AA sequence:RefSeq:WP_006711136.1
COORDINATES: similar to AA sequence:RefSeq:WP_017087944.1
COORDINATES: similar to AA sequence:RefSeq:WP_017188771.1
COORDINATES: similar to AA sequence:RefSeq:WP_019274866.1
COORDINATES: similar to AA sequence:RefSeq:WP_006714561.1
COORDINATES: similar to AA sequence:RefSeq:WP_012601171.1
COORDINATES: similar to AA sequence:RefSeq:WP_020195169.1
COORDINATES: similar to AA sequence:RefSeq:WP_019274870.1
COORDINATES: similar to AA sequence:RefSeq:WP_019274871.1
COORDINATES: similar to AA sequence:RefSeq:WP_019274872.1
COORDINATES: similar to AA sequence:RefSeq:WP_019274873.1
COORDINATES: similar to AA sequence:RefSeq:WP_006958553.1
COORDINATES: protein motif:HMM:NF021049.2
YiiD C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004406719.1
COORDINATES: similar to AA sequence:RefSeq:WP_017110866.1
COORDINATES: similar to AA sequence:RefSeq:WP_008081600.1
COORDINATES: similar to AA sequence:RefSeq:WP_006958548.1
5-carboxymethyl-2-hydroxymuconate Delta-isomerase
COORDINATES: similar to AA sequence:RefSeq:WP_019274879.1
PhzF family phenazine biosynthesis protein
COORDINATES: similar to AA sequence:RefSeq:WP_016784610.1
COORDINATES: similar to AA sequence:RefSeq:WP_017449629.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010438453.1
COORDINATES: similar to AA sequence:RefSeq:WP_010441064.1
COORDINATES: similar to AA sequence:RefSeq:WP_012841698.1
COORDINATES: similar to AA sequence:RefSeq:WP_006958543.1
COORDINATES: similar to AA sequence:RefSeq:WP_008109230.1