Ralstonia insidiosa strain ATCC 49129 plasmid pRI-2, complete sequence.
Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.
Submitted (09-JUN-2016) Environmental Microbial and Food Safety Laboratory, USDA-ARS, 10300 Baltimore Avenue, Beltsville, MD 20705, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP016025.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: CLCGenomic Workbench v. version 8.5;\n Sequencher v. v. 5.2.2\nGenome Coverage :: >90x\nSequencing Technology :: Illumina\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/05/2023 23:19:21\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,896\nCDSs (total) :: 5,831\nGenes (coding) :: 5,792\nCDSs (with protein) :: 5,792\nGenes (RNA) :: 65\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 51\nncRNAs :: 5\nPseudo Genes (total) :: 39\nCDSs (without protein) :: 39\nPseudo Genes (ambiguous residues) :: 0 of 39\nPseudo Genes (frameshifted) :: 13 of 39\nPseudo Genes (incomplete) :: 32 of 39\nPseudo Genes (internal stop) :: 5 of 39\nPseudo Genes (multiple problems) :: 7 of 39\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_009242023.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004636912.1
COORDINATES: similar to AA sequence:RefSeq:WP_009242021.1
COORDINATES: similar to AA sequence:RefSeq:WP_004636907.1
COORDINATES: similar to AA sequence:RefSeq:WP_004636905.1
COORDINATES: similar to AA sequence:RefSeq:WP_004636903.1
COORDINATES: similar to AA sequence:RefSeq:WP_004636902.1
COORDINATES: similar to AA sequence:RefSeq:WP_004636900.1
COORDINATES: similar to AA sequence:RefSeq:WP_004636899.1
COORDINATES: similar to AA sequence:RefSeq:WP_009242017.1
COORDINATES: similar to AA sequence:RefSeq:WP_004636893.1
COORDINATES: similar to AA sequence:RefSeq:WP_004636892.1
COORDINATES: similar to AA sequence:RefSeq:WP_009242013.1
COORDINATES: similar to AA sequence:RefSeq:WP_004636888.1
COORDINATES: similar to AA sequence:RefSeq:WP_012759886.1
COORDINATES: similar to AA sequence:RefSeq:WP_009242057.1
type II toxin-antitoxin system PemK/MazF family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_004636881.1
COORDINATES: similar to AA sequence:RefSeq:WP_004636880.1
COORDINATES: similar to AA sequence:RefSeq:WP_009277722.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_009242052.1
COORDINATES: similar to AA sequence:RefSeq:WP_009242051.1
COORDINATES: similar to AA sequence:RefSeq:WP_009242050.1
lytic transglycosylase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004636277.1
toxin co-regulated pilus biosynthesis Q family protein
COORDINATES: similar to AA sequence:RefSeq:WP_009242048.1
COORDINATES: similar to AA sequence:RefSeq:WP_009242047.1
GO:0009297 - pilus assembly [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009242046.1
COORDINATES: similar to AA sequence:RefSeq:WP_004636270.1
COORDINATES: similar to AA sequence:RefSeq:WP_004636268.1
type II secretion system F family protein
COORDINATES: similar to AA sequence:RefSeq:WP_004636266.1
COORDINATES: similar to AA sequence:RefSeq:WP_004636265.1
COORDINATES: similar to AA sequence:RefSeq:WP_009242043.1
shufflon system plasmid conjugative transfer pilus tip adhesin PilV
COORDINATES: similar to AA sequence:RefSeq:WP_004636259.1
COORDINATES: similar to AA sequence:RefSeq:WP_009277725.1
COORDINATES: similar to AA sequence:RefSeq:WP_004636254.1
COORDINATES: similar to AA sequence:RefSeq:WP_009242042.1
COORDINATES: similar to AA sequence:RefSeq:WP_003262290.1
GO:0003697 - single-stranded DNA binding [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]; GO:0006260 - DNA replication [Evidence IEA]; GO:0006351 - DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004636248.1
COORDINATES: similar to AA sequence:RefSeq:WP_012213618.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004636244.1
COORDINATES: similar to AA sequence:RefSeq:WP_004636242.1
COORDINATES: similar to AA sequence:RefSeq:WP_004636240.1
VirB3 family type IV secretion system protein
COORDINATES: similar to AA sequence:RefSeq:WP_009242039.1
VirB4 family type IV secretion system protein
COORDINATES: similar to AA sequence:RefSeq:WP_004636237.1
COORDINATES: similar to AA sequence:RefSeq:WP_009242038.1
COORDINATES: similar to AA sequence:RefSeq:WP_004636233.1
GO:0030255 - protein secretion by the type IV secretion system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009242037.1
COORDINATES: similar to AA sequence:RefSeq:WP_009242036.1
TrbG/VirB9 family P-type conjugative transfer protein
COORDINATES: similar to AA sequence:RefSeq:WP_009242035.1
COORDINATES: similar to AA sequence:RefSeq:WP_004636226.1
COORDINATES: similar to AA sequence:RefSeq:WP_009242033.1
COORDINATES: similar to AA sequence:RefSeq:WP_004636222.1
COORDINATES: similar to AA sequence:RefSeq:WP_004636221.1
COORDINATES: similar to AA sequence:RefSeq:WP_004636218.1
COORDINATES: similar to AA sequence:RefSeq:WP_009242031.1
COORDINATES: similar to AA sequence:RefSeq:WP_004636214.1
COORDINATES: similar to AA sequence:RefSeq:WP_009242030.1
COORDINATES: similar to AA sequence:RefSeq:WP_009242029.1
COORDINATES: similar to AA sequence:RefSeq:WP_004636206.1
COORDINATES: similar to AA sequence:RefSeq:WP_009242025.1
ParB N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004636925.1
COORDINATES: similar to AA sequence:RefSeq:WP_004636923.1
COORDINATES: similar to AA sequence:RefSeq:WP_004636921.1
COORDINATES: similar to AA sequence:RefSeq:WP_009242024.1
type IV secretion system DNA-binding domain-containing protein