Pseudovibrio brasiliensis strain Ab134 plasmid pAb134-05, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Stappiaceae; Pseudovibrio.
A novel family of nonribosomal peptides modulate collective behavior in Pseudovibrio bacteria isolated from marine sponges
Submitted (03-MAY-2021) Department of Pharmaceutical Sciences, University of Illinois at Chicago, 900 S. Ashland Ave, Chicago, IL 60607, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP074131.1.\nBacteria and source DNA available from Alessandra S. Eustaquio,\nUniversity of Illinois at Chicago.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SPAdes v. SEP-2017\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 400.0x\nSequencing Technology :: Illumina NextSeq; Oxford Nanopore MinION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/28/2023 11:08:44\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,418\nCDSs (total) :: 5,324\nGenes (coding) :: 5,296\nCDSs (with protein) :: 5,296\nGenes (RNA) :: 94\nrRNAs :: 6, 6, 6 (5S, 16S, 23S)\ncomplete rRNAs :: 6, 6, 6 (5S, 16S, 23S)\ntRNAs :: 72\nncRNAs :: 4\nPseudo Genes (total) :: 28\nCDSs (without protein) :: 28\nPseudo Genes (ambiguous residues) :: 0 of 28\nPseudo Genes (frameshifted) :: 5 of 28\nPseudo Genes (incomplete) :: 24 of 28\nPseudo Genes (internal stop) :: 8 of 28\nPseudo Genes (multiple problems) :: 6 of 28\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Pseudovibrio brasiliensis
Brazil: Joao Fernandinho Beach, Buzios, state of Rio de Janeiro
COORDINATES: similar to AA sequence:RefSeq:WP_014290391.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:TIGR01644.1
GO:0044423 - virion component [Evidence IEA]
GO:0005198 - structural molecule activity [Evidence IEA]
GO:0019068 - virion assembly [Evidence IEA]
COORDINATES: protein motif:HMM:NF016829.2
COORDINATES: protein motif:HMM:NF016736.2
COORDINATES: protein motif:HMM:NF027401.2
COORDINATES: protein motif:HMM:NF024199.2
COORDINATES: similar to AA sequence:RefSeq:WP_015990157.1
COORDINATES: similar to AA sequence:RefSeq:WP_014286052.1
COORDINATES: similar to AA sequence:RefSeq:WP_016857832.1
phage tail sheath subtilisin-like domain-containing protein
COORDINATES: protein motif:HMM:NF016846.2
COORDINATES: protein motif:HMM:NF021614.2
GO:0098003 - viral tail assembly [Evidence IEA]
COORDINATES: protein motif:HMM:NF018674.2
COORDINATES: protein motif:HMM:NF017316.2
COORDINATES: protein motif:HMM:NF017739.2
contractile injection system protein, VgrG/Pvc8 family
COORDINATES: protein motif:HMM:NF013540.2
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_009465867.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005879940.1
type II toxin-antitoxin system HipA family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_007607505.1
type II toxin-antitoxin system Y4mF family antitoxin
COORDINATES: protein motif:HMM:NF013793.2
COORDINATES: protein motif:HMM:TIGR03454.1