Pseudovibrio brasiliensis strain Ab134 plasmid pAb134-02, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Stappiaceae; Pseudovibrio.
A novel family of nonribosomal peptides modulate collective behavior in Pseudovibrio bacteria isolated from marine sponges
Submitted (03-MAY-2021) Department of Pharmaceutical Sciences, University of Illinois at Chicago, 900 S. Ashland Ave, Chicago, IL 60607, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP074128.1.\nBacteria and source DNA available from Alessandra S. Eustaquio,\nUniversity of Illinois at Chicago.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SPAdes v. SEP-2017\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 400.0x\nSequencing Technology :: Illumina NextSeq; Oxford Nanopore MinION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/28/2023 11:08:44\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,418\nCDSs (total) :: 5,324\nGenes (coding) :: 5,296\nCDSs (with protein) :: 5,296\nGenes (RNA) :: 94\nrRNAs :: 6, 6, 6 (5S, 16S, 23S)\ncomplete rRNAs :: 6, 6, 6 (5S, 16S, 23S)\ntRNAs :: 72\nncRNAs :: 4\nPseudo Genes (total) :: 28\nCDSs (without protein) :: 28\nPseudo Genes (ambiguous residues) :: 0 of 28\nPseudo Genes (frameshifted) :: 5 of 28\nPseudo Genes (incomplete) :: 24 of 28\nPseudo Genes (internal stop) :: 8 of 28\nPseudo Genes (multiple problems) :: 6 of 28\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Pseudovibrio brasiliensis
Brazil: Joao Fernandinho Beach, Buzios, state of Rio de Janeiro
COORDINATES: similar to AA sequence:RefSeq:WP_014290391.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008550882.1
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008551137.1
trifunctional transcriptional activator/DNA repair protein Ada/methylated-DNA--[protein]-cysteine S-methyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_014290388.1
GO:0003824 - catalytic activity [Evidence IEA]
isocitrate lyase/phosphoenolpyruvate mutase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014290387.1
COORDINATES: similar to AA sequence:RefSeq:WP_008550851.1
COORDINATES: similar to AA sequence:RefSeq:WP_008551104.1
glutathione S-transferase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014290385.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008551083.1
COORDINATES: similar to AA sequence:RefSeq:WP_014290383.1
COORDINATES: similar to AA sequence:RefSeq:WP_014290382.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0140662 - ATP-dependent protein folding chaperone [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008551199.1
GO:0008446 - GDP-mannose 4,6-dehydratase activity [Evidence IEA]
GO:0000271 - polysaccharide biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014290380.1
COORDINATES: similar to AA sequence:RefSeq:WP_008551234.1
COORDINATES: similar to AA sequence:RefSeq:WP_014290378.1
GO:0008410 - CoA-transferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008551000.1
COORDINATES: similar to AA sequence:RefSeq:WP_014290376.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014290375.1
GO:0030554 - adenyl nucleotide binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014290374.1
COORDINATES: similar to AA sequence:RefSeq:WP_008550898.1
HAMP domain-containing methyl-accepting chemotaxis protein
COORDINATES: similar to AA sequence:RefSeq:WP_008551160.1
COORDINATES: similar to AA sequence:RefSeq:WP_014290371.1
GO:0007165 - signal transduction [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008550967.1
COORDINATES: similar to AA sequence:RefSeq:WP_014290369.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_008550878.1
COORDINATES: similar to AA sequence:RefSeq:WP_008551026.1
COORDINATES: similar to AA sequence:RefSeq:WP_008550770.1
COORDINATES: similar to AA sequence:RefSeq:WP_014290357.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_014290356.1
GO:0005215 - transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008550858.1
COORDINATES: similar to AA sequence:RefSeq:WP_014290354.1
COORDINATES: similar to AA sequence:RefSeq:WP_014290353.1
GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0016651 - oxidoreductase activity, acting on NAD(P)H [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014290352.1
COORDINATES: similar to AA sequence:RefSeq:WP_008550976.1
COORDINATES: similar to AA sequence:RefSeq:WP_008551001.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0000976 - transcription cis-regulatory region binding [Evidence IEA]
GO:0006351 - DNA-templated transcription [Evidence IEA]; GO:0045892 - negative regulation of DNA-templated transcription [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
LacI family DNA-binding transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_008551253.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_008551146.1
COORDINATES: similar to AA sequence:RefSeq:WP_008550797.1
COORDINATES: similar to AA sequence:RefSeq:WP_014290347.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008550874.1
COORDINATES: similar to AA sequence:RefSeq:WP_014290345.1
COORDINATES: similar to AA sequence:RefSeq:WP_008550909.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008551191.1
COORDINATES: similar to AA sequence:RefSeq:WP_014290342.1
GO:0016799 - hydrolase activity, hydrolyzing N-glycosyl compounds [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
ADP-ribosylglycohydrolase family protein
COORDINATES: protein motif:HMM:NF012792.2
COORDINATES: similar to AA sequence:RefSeq:WP_008550773.1
GO:0020037 - heme binding [Evidence IEA]; GO:0005506 - iron ion binding [Evidence IEA]; GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014290339.1
COORDINATES: similar to AA sequence:RefSeq:WP_008550930.1
COORDINATES: similar to AA sequence:RefSeq:WP_008551225.1
COORDINATES: similar to AA sequence:RefSeq:WP_008550921.1
GO:0016742 - hydroxymethyl-, formyl- and related transferase activity [Evidence IEA]
GO:0009058 - biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008550923.1
COORDINATES: similar to AA sequence:RefSeq:WP_008550829.1
COORDINATES: similar to AA sequence:RefSeq:WP_008551124.1
COORDINATES: similar to AA sequence:RefSeq:WP_008551097.1
COORDINATES: similar to AA sequence:RefSeq:WP_014290331.1
COORDINATES: similar to AA sequence:RefSeq:WP_014290330.1
GO:0015159 - polysaccharide transmembrane transporter activity [Evidence IEA]
GO:0015774 - polysaccharide transport [Evidence IEA]
polysaccharide biosynthesis/export family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014290329.1
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_008551244.1
aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_008551233.1
COORDINATES: similar to AA sequence:RefSeq:WP_008550931.1
COORDINATES: similar to AA sequence:RefSeq:WP_011046437.1
GO:0004411 - homogentisate 1,2-dioxygenase activity [Evidence IEA]
GO:0006559 - L-phenylalanine catabolic process [Evidence IEA]; GO:0006572 - tyrosine catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014290323.1
COORDINATES: similar to AA sequence:RefSeq:WP_008550843.1
COORDINATES: similar to AA sequence:RefSeq:WP_008551094.1
GO:0008643 - carbohydrate transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008551015.1
GO:0004565 - beta-galactosidase activity [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
beta-galactosidase trimerization domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008550890.1
COORDINATES: similar to AA sequence:RefSeq:WP_008551164.1
endonuclease/exonuclease/phosphatase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008550926.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC
COORDINATES: similar to AA sequence:RefSeq:WP_008551111.1
COORDINATES: similar to AA sequence:RefSeq:WP_008550999.1
GO:0004671 - protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity [Evidence IEA]
GO:0006481 - C-terminal protein methylation [Evidence IEA]
isoprenylcysteine carboxylmethyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014290316.1
COORDINATES: similar to AA sequence:RefSeq:WP_014290315.1
COORDINATES: similar to AA sequence:RefSeq:WP_014290314.1
COORDINATES: similar to AA sequence:RefSeq:WP_008550793.1
COORDINATES: similar to AA sequence:RefSeq:WP_014290312.1
COORDINATES: similar to AA sequence:RefSeq:WP_014290311.1
COORDINATES: protein motif:HMM:NF024212.2
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
MarR family winged helix-turn-helix transcriptional regulator
COORDINATES: protein motif:HMM:NF019604.2
COORDINATES: protein motif:HMM:NF024852.2
COORDINATES: similar to AA sequence:RefSeq:WP_014290309.1
NAD-dependent epimerase/dehydratase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_009466888.1
GO:0003674 - molecular_function [Evidence IEA]
GO:0006415 - translational termination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008550776.1
GO:0003747 - translation release factor activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014290305.1
COORDINATES: similar to AA sequence:RefSeq:WP_014290304.1
COORDINATES: similar to AA sequence:RefSeq:WP_014290303.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_008551038.1
GO:0015297 - antiporter activity [Evidence IEA]; GO:0042910 - xenobiotic transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008551014.1
COORDINATES: similar to AA sequence:RefSeq:WP_008551041.1
GO:0005886 - plasma membrane [Evidence IEA]
GO:0005436 - sodium:phosphate symporter activity [Evidence IEA]
GO:0044341 - sodium-dependent phosphate transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014290298.1
COORDINATES: similar to AA sequence:RefSeq:WP_008551106.1
COORDINATES: similar to AA sequence:RefSeq:WP_008551082.1
COORDINATES: similar to AA sequence:RefSeq:WP_008551176.1
COORDINATES: similar to AA sequence:RefSeq:WP_014290293.1
COORDINATES: similar to AA sequence:RefSeq:WP_008551028.1
COORDINATES: similar to AA sequence:RefSeq:WP_008551065.1
COORDINATES: similar to AA sequence:RefSeq:WP_008550984.1
COORDINATES: similar to AA sequence:RefSeq:WP_008551060.1
COORDINATES: similar to AA sequence:RefSeq:WP_008550979.1
COORDINATES: similar to AA sequence:RefSeq:WP_014290287.1
COORDINATES: similar to AA sequence:RefSeq:WP_008551218.1
COORDINATES: similar to AA sequence:RefSeq:WP_008027458.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
YjjW family glycine radical enzyme activase
COORDINATES: similar to AA sequence:RefSeq:WP_008551187.1
GO:0005575 - cellular_component [Evidence IEA]
GO:0008150 - biological_process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008550823.1
GO:0005515 - protein binding [Evidence IEA]
GO:0006749 - glutathione metabolic process [Evidence IEA]
glutathione-dependent disulfide-bond oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_007814379.1
COORDINATES: similar to AA sequence:RefSeq:WP_008550970.1
carboxymuconolactone decarboxylase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014290278.1
GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008551255.1
COORDINATES: similar to AA sequence:RefSeq:WP_008551168.1
GO:0008168 - methyltransferase activity [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008551245.1
COORDINATES: similar to AA sequence:RefSeq:WP_008550867.1
COORDINATES: similar to AA sequence:RefSeq:WP_014290274.1
GO:0019867 - outer membrane [Evidence IEA]
secretin and TonB N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014290273.1
GO:0016989 - sigma factor antagonist activity [Evidence IEA]; GO:0004888 - transmembrane signaling receptor activity [Evidence IEA]
GO:0006811 - monoatomic ion transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007702319.1
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]
COORDINATES: protein motif:HMM:NF025025.2
COORDINATES: similar to AA sequence:RefSeq:WP_008550919.1
GO:0016757 - glycosyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008551032.1
COORDINATES: similar to AA sequence:RefSeq:WP_014290270.1
COORDINATES: similar to AA sequence:RefSeq:WP_014290269.1
COORDINATES: similar to AA sequence:RefSeq:WP_014290268.1
phytanoyl-CoA dioxygenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014290267.1
COORDINATES: similar to AA sequence:RefSeq:WP_014290266.1
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_008550774.1
COORDINATES: similar to AA sequence:RefSeq:WP_008550840.1
COORDINATES: similar to AA sequence:RefSeq:WP_013960615.1
GO:0016812 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF016800.2
COORDINATES: similar to AA sequence:RefSeq:WP_008547045.1
ATP-grasp fold amidoligase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014285515.1
COORDINATES: similar to AA sequence:RefSeq:WP_014285514.1
GO:0016020 - membrane [Evidence IEA]; GO:0042597 - periplasmic space [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014285513.1
COORDINATES: similar to AA sequence:RefSeq:WP_008546424.1
GO:0016740 - transferase activity [Evidence IEA]
GO:0006486 - protein glycosylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014285511.1
COORDINATES: similar to AA sequence:RefSeq:WP_008547288.1
GO:0045226 - extracellular polysaccharide biosynthetic process [Evidence IEA]
polysaccharide biosynthesis tyrosine autokinase
COORDINATES: protein motif:HMM:NF013166.2
COORDINATES: protein motif:HMM:NF013786.2
GO:0008897 - holo-[acyl-carrier-protein] synthase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]
4'-phosphopantetheinyl transferase superfamily protein
COORDINATES: protein motif:HMM:NF012873.2
COORDINATES: protein motif:HMM:NF003417.0
COORDINATES: protein motif:HMM:NF019310.2
COORDINATES: similar to AA sequence:RefSeq:WP_011533904.1
GO:0016788 - hydrolase activity, acting on ester bonds [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003348961.1
COORDINATES: similar to AA sequence:RefSeq:WP_008551130.1
COORDINATES: similar to AA sequence:RefSeq:WP_008550993.1
COORDINATES: similar to AA sequence:RefSeq:WP_008550804.1
COORDINATES: similar to AA sequence:RefSeq:WP_014290209.1
COORDINATES: similar to AA sequence:RefSeq:WP_014290208.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011569083.1
tripartite tricarboxylate transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_008551181.1
tripartite tricarboxylate transporter TctB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014290205.1
tripartite tricarboxylate transporter permease
COORDINATES: similar to AA sequence:RefSeq:WP_008551003.1
COORDINATES: protein motif:HMM:NF025736.2
COORDINATES: similar to AA sequence:RefSeq:WP_014290203.1
COORDINATES: similar to AA sequence:RefSeq:WP_014290201.1
COORDINATES: similar to AA sequence:RefSeq:WP_008550954.1
COORDINATES: similar to AA sequence:RefSeq:WP_014290199.1
COORDINATES: similar to AA sequence:RefSeq:WP_020055377.1
COORDINATES: similar to AA sequence:RefSeq:WP_014290197.1
COORDINATES: similar to AA sequence:RefSeq:WP_014290196.1
COORDINATES: similar to AA sequence:RefSeq:WP_008551126.1
COORDINATES: similar to AA sequence:RefSeq:WP_014290193.1
COORDINATES: similar to AA sequence:RefSeq:WP_008550968.1
COORDINATES: similar to AA sequence:RefSeq:WP_008551197.1
FadR/GntR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_008550982.1
COORDINATES: similar to AA sequence:RefSeq:WP_020813352.1
sugar ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_008550863.1
COORDINATES: similar to AA sequence:RefSeq:WP_008551133.1
COORDINATES: similar to AA sequence:RefSeq:WP_014290188.1
COORDINATES: similar to AA sequence:RefSeq:WP_014290187.1
COORDINATES: similar to AA sequence:RefSeq:WP_008550884.1
GO:0008643 - carbohydrate transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015341675.1
sugar ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_008551018.1
COORDINATES: similar to AA sequence:RefSeq:WP_008551108.1
COORDINATES: similar to AA sequence:RefSeq:WP_008551211.1
COORDINATES: similar to AA sequence:RefSeq:WP_008551125.1
COORDINATES: similar to AA sequence:RefSeq:WP_014290180.1
COORDINATES: similar to AA sequence:RefSeq:WP_014290179.1
GO:0016747 - acyltransferase activity, transferring groups other than amino-acyl groups [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014290178.1
GO:0070403 - NAD+ binding [Evidence IEA]
GO:0006631 - fatty acid metabolic process [Evidence IEA]
3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein
COORDINATES: protein motif:HMM:NF024629.2
COORDINATES: similar to AA sequence:RefSeq:WP_008551173.1
COORDINATES: similar to AA sequence:RefSeq:WP_014290174.1
COORDINATES: protein motif:HMM:NF024700.2
COORDINATES: similar to AA sequence:RefSeq:WP_008550870.1
COORDINATES: similar to AA sequence:RefSeq:WP_008551114.1
GO:0015173 - aromatic amino acid transmembrane transporter activity [Evidence IEA]
GO:0015801 - aromatic amino acid transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008551144.1
GO:0008478 - pyridoxal kinase activity [Evidence IEA]
GO:0009443 - pyridoxal 5'-phosphate salvage [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008551223.1
COORDINATES: similar to AA sequence:RefSeq:WP_008551254.1
COORDINATES: similar to AA sequence:RefSeq:WP_008550787.1
Lrp/AsnC family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_008551252.1
GO:0005507 - copper ion binding [Evidence IEA]
GO:0055070 - copper ion homeostasis [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014290167.1
COORDINATES: protein motif:HMM:NF027286.2
COORDINATES: similar to AA sequence:RefSeq:WP_008551204.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008550987.1
GO:0010181 - FMN binding [Evidence IEA]; GO:0050136 - NADH dehydrogenase (quinone) activity [Evidence IEA]; GO:0008753 - NADPH dehydrogenase (quinone) activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008550892.1
GO:0001216 - DNA-binding transcription activator activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008551149.1
COORDINATES: similar to AA sequence:RefSeq:WP_014290159.1
GO:0008776 - acetate kinase activity [Evidence IEA]
GO:0006083 - acetate metabolic process [Evidence IEA]; GO:0006113 - fermentation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014290158.1
bifunctional enoyl-CoA hydratase/phosphate acetyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_008551046.1
COORDINATES: similar to AA sequence:RefSeq:WP_014290156.1
GO:0004318 - enoyl-[acyl-carrier-protein] reductase (NADH) activity [Evidence IEA]
GO:0006633 - fatty acid biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008550861.1
GO:0071949 - FAD binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024836.2
cyclic nucleotide-binding domain-containing protein
COORDINATES: protein motif:HMM:TIGR00027.1
COORDINATES: similar to AA sequence:RefSeq:WP_008551085.1
COORDINATES: similar to AA sequence:RefSeq:WP_014290151.1
COORDINATES: similar to AA sequence:RefSeq:WP_008550801.1
COORDINATES: similar to AA sequence:RefSeq:WP_014290149.1
mandelate racemase/muconate lactonizing enzyme family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014290148.1
GO:0016853 - isomerase activity [Evidence IEA]
GO:0006725 - cellular aromatic compound metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014290147.1
GO:0010181 - FMN binding [Evidence IEA]; GO:0004733 - pyridoxamine-phosphate oxidase activity [Evidence IEA]
GO:0008615 - pyridoxine biosynthetic process [Evidence IEA]
pyridoxamine 5'-phosphate oxidase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008551119.1
COORDINATES: similar to AA sequence:RefSeq:WP_014290145.1
COORDINATES: similar to AA sequence:RefSeq:WP_008550932.1
COORDINATES: similar to AA sequence:RefSeq:WP_008550777.1
COORDINATES: similar to AA sequence:RefSeq:WP_014290142.1
COORDINATES: similar to AA sequence:RefSeq:WP_009827366.1
winged helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014290139.1
COORDINATES: similar to AA sequence:RefSeq:WP_008551179.1
putative sulfate exporter family transporter
COORDINATES: similar to AA sequence:RefSeq:WP_008550791.1
COORDINATES: similar to AA sequence:RefSeq:WP_006199249.1
GO:0004024 - alcohol dehydrogenase activity, zinc-dependent [Evidence IEA]; GO:0051903 - S-(hydroxymethyl)glutathione dehydrogenase activity [Evidence IEA]
GO:0006113 - fermentation [Evidence IEA]; GO:0009404 - toxin metabolic process [Evidence IEA]
S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_008550880.1
GO:0018738 - S-formylglutathione hydrolase activity [Evidence IEA]
GO:0046292 - formaldehyde metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014290134.1
SCP2 sterol-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008550824.1
methyltransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014290132.1
GO:0003824 - catalytic activity [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014290131.1
COORDINATES: similar to AA sequence:RefSeq:WP_008551155.1
GO:0004668 - protein-arginine deiminase activity [Evidence IEA]
GO:0009446 - putrescine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014290129.1
COORDINATES: similar to AA sequence:RefSeq:WP_014290128.1
COORDINATES: similar to AA sequence:RefSeq:WP_014290127.1
COORDINATES: similar to AA sequence:RefSeq:WP_014290126.1
GO:0004735 - pyrroline-5-carboxylate reductase activity [Evidence IEA]
GO:0006561 - proline biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008550907.1
aspartate/glutamate racemase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008551148.1
COORDINATES: similar to AA sequence:RefSeq:WP_011242195.1
COORDINATES: similar to AA sequence:RefSeq:WP_011049347.1
COORDINATES: similar to AA sequence:RefSeq:WP_014290492.1
COORDINATES: similar to AA sequence:RefSeq:WP_009825821.1
TRAP transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_008550825.1
COORDINATES: similar to AA sequence:RefSeq:WP_005860366.1
GO:0005886 - plasma membrane [Evidence IEA]; GO:0031317 - tripartite ATP-independent periplasmic transporter complex [Evidence IEA]
GO:0015556 - C4-dicarboxylate transmembrane transporter activity [Evidence IEA]
GO:0015740 - C4-dicarboxylate transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014290491.1
COORDINATES: similar to AA sequence:RefSeq:WP_008551128.1
COORDINATES: similar to AA sequence:RefSeq:WP_014290489.1
GO:0030253 - protein secretion by the type I secretion system [Evidence IEA]
HlyD family type I secretion periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_014290488.1
pyridoxal phosphate-dependent aminotransferase
COORDINATES: similar to AA sequence:RefSeq:WP_014290487.1
serine hydrolase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008551061.1
COORDINATES: similar to AA sequence:RefSeq:WP_008551180.1
COORDINATES: similar to AA sequence:RefSeq:WP_008550873.1
patatin-like phospholipase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014290480.1
COORDINATES: similar to AA sequence:RefSeq:WP_014290479.1
COORDINATES: similar to AA sequence:RefSeq:WP_014290478.1
GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014290477.1
COORDINATES: similar to AA sequence:RefSeq:WP_008550856.1
nuclear transport factor 2 family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014290475.1
GO:0009486 - cytochrome bo3 ubiquinol oxidase activity [Evidence IEA]
GO:0015990 - electron transport coupled proton transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014290474.1
cytochrome o ubiquinol oxidase subunit I
COORDINATES: similar to AA sequence:RefSeq:WP_008550850.1
cytochrome (ubi)quinol oxidase subunit III
COORDINATES: similar to AA sequence:RefSeq:WP_011582845.1
cytochrome o ubiquinol oxidase subunit IV
COORDINATES: similar to AA sequence:RefSeq:WP_014290472.1
COORDINATES: similar to AA sequence:RefSeq:WP_014290471.1
COORDINATES: similar to AA sequence:RefSeq:WP_008551213.1
TRAP transporter substrate-binding protein DctP
COORDINATES: similar to AA sequence:RefSeq:WP_008550786.1
COORDINATES: similar to AA sequence:RefSeq:WP_014290467.1
COORDINATES: similar to AA sequence:RefSeq:WP_014290466.1
isocitrate lyase/PEP mutase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_019998967.1
COORDINATES: similar to AA sequence:RefSeq:WP_008551095.1
GO:0036211 - protein modification process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008551251.1
COORDINATES: similar to AA sequence:RefSeq:WP_014290464.1
NAD(P)-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008551236.1
COORDINATES: similar to AA sequence:RefSeq:WP_008550866.1
COORDINATES: similar to AA sequence:RefSeq:WP_008551120.1
COORDINATES: similar to AA sequence:RefSeq:WP_008550902.1
COORDINATES: similar to AA sequence:RefSeq:WP_014290459.1
COORDINATES: similar to AA sequence:RefSeq:WP_008550980.1
COORDINATES: similar to AA sequence:RefSeq:WP_010437560.1
COORDINATES: similar to AA sequence:RefSeq:WP_014290457.1
GO:0004334 - fumarylacetoacetase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024854.2
COORDINATES: similar to AA sequence:RefSeq:WP_008551151.1
GO:0016034 - maleylacetoacetate isomerase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014290454.1
COORDINATES: similar to AA sequence:RefSeq:WP_008550998.1
COORDINATES: similar to AA sequence:RefSeq:WP_014290452.1
COORDINATES: similar to AA sequence:RefSeq:WP_014290451.1
COORDINATES: similar to AA sequence:RefSeq:WP_014290450.1
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008551073.1
COORDINATES: similar to AA sequence:RefSeq:WP_008551091.1
COORDINATES: similar to AA sequence:RefSeq:WP_008550833.1
COORDINATES: similar to AA sequence:RefSeq:WP_008551206.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0004356 - glutamate-ammonia ligase activity [Evidence IEA]
GO:0006542 - glutamine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010626880.1
COORDINATES: similar to AA sequence:RefSeq:WP_017009995.1
COORDINATES: similar to AA sequence:RefSeq:WP_008551036.1
COORDINATES: similar to AA sequence:RefSeq:WP_008550940.1
COORDINATES: similar to AA sequence:RefSeq:WP_014290444.1
MurR/RpiR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_014290443.1
COORDINATES: similar to AA sequence:RefSeq:WP_014290442.1
LysR substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014290441.1
COORDINATES: similar to AA sequence:RefSeq:WP_008551005.1
COORDINATES: similar to AA sequence:RefSeq:WP_014290439.1
COORDINATES: similar to AA sequence:RefSeq:WP_008551248.1
COORDINATES: similar to AA sequence:RefSeq:WP_014290435.1
COORDINATES: similar to AA sequence:RefSeq:WP_014290434.1
COORDINATES: similar to AA sequence:RefSeq:WP_008551093.1
COORDINATES: similar to AA sequence:RefSeq:WP_008550871.1
COORDINATES: similar to AA sequence:RefSeq:WP_008551078.1
COORDINATES: similar to AA sequence:RefSeq:WP_012842196.1
COORDINATES: similar to AA sequence:RefSeq:WP_014290429.1
COORDINATES: similar to AA sequence:RefSeq:WP_008550904.1
COORDINATES: similar to AA sequence:RefSeq:WP_014290428.1
COORDINATES: similar to AA sequence:RefSeq:WP_019099690.1
COORDINATES: similar to AA sequence:RefSeq:WP_008550845.1
GO:0051920 - peroxiredoxin activity [Evidence IEA]
This protein belongs to a clade of uncharacterized proteins related to peroxidases such as the alkylhydroperoxidase AhpD; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014290426.1
COORDINATES: similar to AA sequence:RefSeq:WP_014290425.1
COORDINATES: similar to AA sequence:RefSeq:WP_014290424.1
COORDINATES: similar to AA sequence:RefSeq:WP_008551189.1
COORDINATES: similar to AA sequence:RefSeq:WP_008551242.1
COORDINATES: similar to AA sequence:RefSeq:WP_008551138.1
COORDINATES: similar to AA sequence:RefSeq:WP_014290421.1
COORDINATES: similar to AA sequence:RefSeq:WP_014290420.1
NAD(P)(+) transhydrogenase (Re/Si-specific) subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_009824895.1
GO:0008746 - NAD(P)+ transhydrogenase activity [Evidence IEA]
GO:1902600 - proton transmembrane transport [Evidence IEA]
Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_014290416.1
COORDINATES: similar to AA sequence:RefSeq:WP_008551109.1
COORDINATES: similar to AA sequence:RefSeq:WP_014290414.1
COORDINATES: similar to AA sequence:RefSeq:WP_008551044.1
COORDINATES: similar to AA sequence:RefSeq:WP_014290412.1
COORDINATES: similar to AA sequence:RefSeq:WP_014290411.1
COORDINATES: similar to AA sequence:RefSeq:WP_008551035.1
COORDINATES: similar to AA sequence:RefSeq:WP_014290409.1
COORDINATES: similar to AA sequence:RefSeq:WP_014290408.1
COORDINATES: similar to AA sequence:RefSeq:WP_008550914.1
COORDINATES: similar to AA sequence:RefSeq:WP_014290406.1
glutathione S-transferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008074304.1
COORDINATES: similar to AA sequence:RefSeq:WP_008550988.1
COORDINATES: similar to AA sequence:RefSeq:WP_014290402.1
2-oxoacid:ferredoxin oxidoreductase subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_008550937.1
2-oxoacid:acceptor oxidoreductase subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_008550784.1
COORDINATES: similar to AA sequence:RefSeq:WP_008550888.1
COORDINATES: similar to AA sequence:RefSeq:WP_014290396.1
GO:0043565 - sequence-specific DNA binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014290395.1
COORDINATES: similar to AA sequence:RefSeq:WP_008551250.1
COORDINATES: similar to AA sequence:RefSeq:WP_008551063.1
COORDINATES: similar to AA sequence:RefSeq:WP_008550990.1
COORDINATES: similar to AA sequence:RefSeq:WP_014290392.1