Streptomyces anulatus strain YINM00001 plasmid pYINM00001, complete sequence.
Bacteria; Actinomycetota; Actinomycetes; Kitasatosporales; Streptomycetaceae; Streptomyces.
Exploration of Diverse Secondary Metabolites From Streptomyces sp. YINM00001, Using Genome Mining and One Strain Many Compounds Approach
Submitted (27-OCT-2021) Yunnan University, school of medicine, 2 North Cui Hu Road, kunming 650091, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP086103.1.\nBacteria and source DNA available from Min Yin, Yunnan University,\nChina.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SOAPdenovo v. v2.04\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 186.0x\nSequencing Technology :: Illumina HiSeq; PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/16/2023 04:09:22\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 7,548\nCDSs (total) :: 7,458\nGenes (coding) :: 7,325\nCDSs (with protein) :: 7,325\nGenes (RNA) :: 90\nrRNAs :: 6, 6, 6 (5S, 16S, 23S)\ncomplete rRNAs :: 6, 6, 6 (5S, 16S, 23S)\ntRNAs :: 69\nncRNAs :: 3\nPseudo Genes (total) :: 133\nCDSs (without protein) :: 133\nPseudo Genes (ambiguous residues) :: 0 of 133\nPseudo Genes (frameshifted) :: 42 of 133\nPseudo Genes (incomplete) :: 103 of 133\nPseudo Genes (internal stop) :: 14 of 133\nPseudo Genes (multiple problems) :: 24 of 133\nCRISPR Arrays :: 3\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF014273.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_002813961.1
COORDINATES: protein motif:HMM:NF023505.2
COORDINATES: protein motif:HMM:NF036314.2
COORDINATES: protein motif:HMM:NF024931.2
magnesium chelatase domain-containing protein
COORDINATES: protein motif:HMM:NF013980.2
COORDINATES: protein motif:HMM:NF022337.2
COORDINATES: similar to AA sequence:RefSeq:WP_018847818.1
COORDINATES: similar to AA sequence:RefSeq:WP_011690842.1
COORDINATES: protein motif:HMM:NF012372.2
GO:0008168 - methyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019525404.1
COORDINATES: similar to AA sequence:RefSeq:WP_020123827.1
COORDINATES: similar to AA sequence:RefSeq:WP_006135007.1
COORDINATES: similar to AA sequence:RefSeq:WP_010981614.1
COORDINATES: similar to AA sequence:RefSeq:WP_019074665.1
COORDINATES: protein motif:HMM:NF025107.2
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF012298.2
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006602624.1
COORDINATES: similar to AA sequence:RefSeq:WP_007447125.1
COORDINATES: similar to AA sequence:RefSeq:WP_007447126.1
COORDINATES: similar to AA sequence:RefSeq:WP_014043471.1
COORDINATES: similar to AA sequence:RefSeq:WP_016640862.1
sigma-70 family RNA polymerase sigma factor
COORDINATES: similar to AA sequence:RefSeq:WP_006135001.1
COORDINATES: similar to AA sequence:RefSeq:WP_011039465.1
COORDINATES: similar to AA sequence:RefSeq:WP_018102187.1
COORDINATES: similar to AA sequence:RefSeq:WP_010981620.1
COORDINATES: similar to AA sequence:RefSeq:WP_004993871.1
COORDINATES: similar to AA sequence:RefSeq:WP_019074612.1
type II secretion system F family protein
COORDINATES: similar to AA sequence:RefSeq:WP_019329505.1
COORDINATES: similar to AA sequence:RefSeq:WP_018102192.1
COORDINATES: similar to AA sequence:RefSeq:WP_019329503.1
COORDINATES: similar to AA sequence:RefSeq:WP_019329502.1
TadE/TadG family type IV pilus assembly protein
COORDINATES: similar to AA sequence:RefSeq:WP_019076025.1
COORDINATES: protein motif:HMM:NF013630.2
LysM peptidoglycan-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015612198.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018490586.1
COORDINATES: similar to AA sequence:RefSeq:WP_019061668.1
COORDINATES: similar to AA sequence:RefSeq:WP_015577200.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
aminoglycoside phosphotransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018522990.1
COORDINATES: similar to AA sequence:RefSeq:WP_011039332.1
COORDINATES: similar to AA sequence:RefSeq:WP_019329417.1
COORDINATES: protein motif:HMM:NF025022.2
COORDINATES: similar to AA sequence:RefSeq:WP_003984061.1
COORDINATES: similar to AA sequence:RefSeq:WP_016828477.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_003971404.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF039715.1
COORDINATES: similar to AA sequence:RefSeq:WP_015577063.1
COORDINATES: similar to AA sequence:RefSeq:WP_003973108.1
COORDINATES: similar to AA sequence:RefSeq:WP_003965453.1
COORDINATES: protein motif:HMM:NF012415.2
COORDINATES: similar to AA sequence:RefSeq:WP_017242293.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011558666.1
GO:0004803 - transposase activity [Evidence IEA]
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011030528.1
GO:0005576 - extracellular region [Evidence IEA]
GO:0004222 - metalloendopeptidase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_076611972.1
COORDINATES: similar to AA sequence:RefSeq:WP_008745676.1
COORDINATES: similar to AA sequence:RefSeq:WP_018571795.1
COORDINATES: similar to AA sequence:RefSeq:WP_003955327.1
winged helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_005268760.1
tripartite tricarboxylate transporter substrate-binding protein
COORDINATES: protein motif:HMM:NF014567.2
COORDINATES: similar to AA sequence:RefSeq:WP_004001490.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015611530.1
sulfite exporter TauE/SafE family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012377770.1
COORDINATES: similar to AA sequence:RefSeq:WP_007447088.1
COORDINATES: similar to AA sequence:RefSeq:WP_018557344.1
COORDINATES: similar to AA sequence:RefSeq:WP_007457465.1
COORDINATES: similar to AA sequence:RefSeq:WP_014179501.1
COORDINATES: similar to AA sequence:RefSeq:WP_020554342.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018538154.1
COORDINATES: similar to AA sequence:RefSeq:WP_017948468.1
GO:0003674 - molecular_function [Evidence IEA]
GO:0043571 - maintenance of CRISPR repeat elements [Evidence IEA]
type I-E CRISPR-associated protein Cas6/Cse3/CasE
COORDINATES: similar to AA sequence:RefSeq:WP_007461023.1
type I-E CRISPR-associated protein Cas5/CasD
COORDINATES: similar to AA sequence:RefSeq:WP_007461024.1
type I-E CRISPR-associated protein Cas7/Cse4/CasC
COORDINATES: similar to AA sequence:RefSeq:WP_010988936.1
type I-E CRISPR-associated protein Cse2/CasB
COORDINATES: similar to AA sequence:RefSeq:WP_007461028.1
type I-E CRISPR-associated protein Cse1/CasA
COORDINATES: similar to AA sequence:RefSeq:WP_007461030.1
GO:0004386 - helicase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007458579.1
COORDINATES: similar to AA sequence:RefSeq:WP_007830723.1
COORDINATES: similar to AA sequence:RefSeq:WP_018845096.1
COORDINATES: similar to AA sequence:RefSeq:WP_006351151.1
COORDINATES: similar to AA sequence:RefSeq:WP_014158430.1
COORDINATES: similar to AA sequence:RefSeq:WP_010636458.1
COORDINATES: similar to AA sequence:RefSeq:WP_018554946.1
COORDINATES: similar to AA sequence:RefSeq:WP_014677471.1
COORDINATES: similar to AA sequence:RefSeq:WP_007445994.1
COORDINATES: similar to AA sequence:RefSeq:WP_014158434.1
COORDINATES: similar to AA sequence:RefSeq:WP_007445993.1
COORDINATES: similar to AA sequence:RefSeq:WP_007445991.1
COORDINATES: similar to AA sequence:RefSeq:WP_009998296.1
COORDINATES: similar to AA sequence:RefSeq:WP_018522962.1
COORDINATES: similar to AA sequence:RefSeq:WP_009998292.1
COORDINATES: similar to AA sequence:RefSeq:WP_018555002.1
COORDINATES: similar to AA sequence:RefSeq:WP_006374042.1
COORDINATES: similar to AA sequence:RefSeq:WP_007460793.1
COORDINATES: similar to AA sequence:RefSeq:WP_015038626.1
COORDINATES: similar to AA sequence:RefSeq:WP_018569242.1
COORDINATES: similar to AA sequence:RefSeq:WP_018557880.1
COORDINATES: similar to AA sequence:RefSeq:WP_016328190.1
COORDINATES: similar to AA sequence:RefSeq:WP_019884392.1
COORDINATES: protein motif:HMM:NF012798.2
COORDINATES: similar to AA sequence:RefSeq:WP_019884390.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011039411.1
COORDINATES: protein motif:HMM:NF012514.2
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005032748.1
COORDINATES: similar to AA sequence:RefSeq:WP_014677508.1
COORDINATES: similar to AA sequence:RefSeq:WP_018523012.1
COORDINATES: similar to AA sequence:RefSeq:WP_018523013.1
COORDINATES: similar to AA sequence:RefSeq:WP_005477537.1
COORDINATES: similar to AA sequence:RefSeq:WP_014158470.1
COORDINATES: protein motif:HMM:NF024432.2
COORDINATES: protein motif:HMM:NF037054.2
COORDINATES: similar to AA sequence:RefSeq:WP_018523464.1
COORDINATES: protein motif:HMM:NF041492.1
COORDINATES: protein motif:HMM:NF017539.2
COORDINATES: similar to AA sequence:RefSeq:WP_008406850.1
COORDINATES: similar to AA sequence:RefSeq:WP_015449463.1
internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017563448.1
COORDINATES: similar to AA sequence:RefSeq:WP_006606628.1
COORDINATES: similar to AA sequence:RefSeq:WP_007445967.1
COORDINATES: similar to AA sequence:RefSeq:WP_007830623.1
COORDINATES: similar to AA sequence:RefSeq:WP_012378629.1
COORDINATES: protein motif:HMM:NF013180.2
COORDINATES: similar to AA sequence:RefSeq:WP_016828368.1
COORDINATES: similar to AA sequence:RefSeq:WP_014677509.1
COORDINATES: similar to AA sequence:RefSeq:WP_003964031.1
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012377572.1
COORDINATES: similar to AA sequence:RefSeq:WP_003964033.1
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_012377746.1
COORDINATES: similar to AA sequence:RefSeq:WP_003964242.1
COORDINATES: similar to AA sequence:RefSeq:WP_007445950.1
COORDINATES: similar to AA sequence:RefSeq:WP_006345887.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011039439.1
COORDINATES: similar to AA sequence:RefSeq:WP_004921137.1
COORDINATES: similar to AA sequence:RefSeq:WP_037846392.1
COORDINATES: similar to AA sequence:RefSeq:WP_009188870.1
COORDINATES: similar to AA sequence:RefSeq:WP_015575460.1
COORDINATES: similar to AA sequence:RefSeq:WP_018106288.1
COORDINATES: similar to AA sequence:RefSeq:WP_007268854.1
COORDINATES: similar to AA sequence:RefSeq:WP_003977840.1
COORDINATES: similar to AA sequence:RefSeq:WP_007268856.1
COORDINATES: similar to AA sequence:RefSeq:WP_086558212.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012606173.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018555827.1
COORDINATES: similar to AA sequence:RefSeq:WP_018553051.1
COORDINATES: similar to AA sequence:RefSeq:WP_007268493.1
COORDINATES: similar to AA sequence:RefSeq:WP_018106294.1
GO:0003896 - DNA primase activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010056251.1
COORDINATES: similar to AA sequence:RefSeq:WP_007819571.1
COORDINATES: similar to AA sequence:RefSeq:WP_006373363.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_018512592.1
COORDINATES: similar to AA sequence:RefSeq:WP_014055826.1
COORDINATES: similar to AA sequence:RefSeq:WP_009190885.1
GO:0018836 - alkylmercury lyase activity [Evidence IEA]
GO:0046413 - organomercury catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009190886.1
heavy metal-responsive transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_006934815.1
COORDINATES: similar to AA sequence:RefSeq:WP_003954285.1
COORDINATES: similar to AA sequence:RefSeq:WP_017590809.1
COORDINATES: protein motif:HMM:NF025186.2
COORDINATES: similar to AA sequence:RefSeq:WP_009062251.1
COORDINATES: similar to AA sequence:RefSeq:WP_009062249.1
COORDINATES: protein motif:HMM:NF025669.2
COORDINATES: similar to AA sequence:RefSeq:WP_018569204.1
COORDINATES: similar to AA sequence:RefSeq:WP_019524926.1
COORDINATES: similar to AA sequence:RefSeq:WP_013000020.1
COORDINATES: similar to AA sequence:RefSeq:WP_015797161.1
COORDINATES: protein motif:HMM:NF041121.1
SAV_2336 N-terminal domain-related protein
COORDINATES: similar to AA sequence:RefSeq:WP_014177783.1
COORDINATES: similar to AA sequence:RefSeq:WP_018521534.1
COORDINATES: similar to AA sequence:RefSeq:WP_015449423.1
COORDINATES: similar to AA sequence:RefSeq:WP_010988959.1
COORDINATES: similar to AA sequence:RefSeq:WP_018844908.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612357.1
COORDINATES: similar to AA sequence:RefSeq:WP_086558197.1
COORDINATES: similar to AA sequence:RefSeq:WP_007453948.1
GO:0003676 - nucleic acid binding [Evidence IEA]
S1 RNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010645384.1
COORDINATES: similar to AA sequence:RefSeq:WP_020131513.1
COORDINATES: similar to AA sequence:RefSeq:WP_012999002.1
COORDINATES: similar to AA sequence:RefSeq:WP_014158390.1
COORDINATES: similar to AA sequence:RefSeq:WP_014158389.1
COORDINATES: similar to AA sequence:RefSeq:WP_014174719.1
COORDINATES: similar to AA sequence:RefSeq:WP_007261716.1
COORDINATES: similar to AA sequence:RefSeq:WP_018102743.1
COORDINATES: similar to AA sequence:RefSeq:WP_009998625.1
COORDINATES: similar to AA sequence:RefSeq:WP_003957942.1
COORDINATES: similar to AA sequence:RefSeq:WP_008411473.1
COORDINATES: similar to AA sequence:RefSeq:WP_007456485.1
COORDINATES: similar to AA sequence:RefSeq:WP_014152170.1
COORDINATES: similar to AA sequence:RefSeq:WP_007456479.1
COORDINATES: similar to AA sequence:RefSeq:WP_014140772.1
COORDINATES: similar to AA sequence:RefSeq:WP_006383602.1
COORDINATES: similar to AA sequence:RefSeq:WP_012377534.1
COORDINATES: similar to AA sequence:RefSeq:WP_007447148.1
COORDINATES: similar to AA sequence:RefSeq:WP_007495317.1
GO:0009360 - DNA polymerase III complex [Evidence IEA]
GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012377501.1
COORDINATES: similar to AA sequence:RefSeq:WP_012377500.1
COORDINATES: similar to AA sequence:RefSeq:WP_012377547.1
COORDINATES: similar to AA sequence:RefSeq:WP_006129981.1
COORDINATES: protein motif:HMM:NF024949.2
COORDINATES: protein motif:HMM:NF024970.2
COORDINATES: similar to AA sequence:RefSeq:WP_007460951.1
ScbR family autoregulator-binding transcription factor
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
COORDINATES: similar to AA sequence:RefSeq:WP_003967261.1
COORDINATES: protein motif:HMM:NF025027.2
COORDINATES: similar to AA sequence:RefSeq:WP_015449532.1
COORDINATES: similar to AA sequence:RefSeq:WP_015449533.1