Roseobacter ponti strain DSM 106830 plasmid p1, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodobacterales; Roseobacteraceae; Roseobacter.
Submitted (11-FEB-2020) Genomic and Applied Microbiology & Goettingen Genomics Laboratory, Georg-August-University Goettingen, Grisebachstr. 8, Goettingen, Lower Saxony 37077, Germany
REFSEQ INFORMATION: The reference sequence is identical to\nCP048789.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 25-JAN-2020\nAssembly Method :: Unicycler v. v0.4.8\nAssembly Name :: ROPI\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 661.0x\nSequencing Technology :: Oxford Nanopore MiniION; Illumina MiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/06/2023 02:27:23\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,833\nCDSs (total) :: 3,785\nGenes (coding) :: 3,769\nCDSs (with protein) :: 3,769\nGenes (RNA) :: 48\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 42\nncRNAs :: 3\nPseudo Genes (total) :: 16\nCDSs (without protein) :: 16\nPseudo Genes (ambiguous residues) :: 0 of 16\nPseudo Genes (frameshifted) :: 4 of 16\nPseudo Genes (incomplete) :: 14 of 16\nPseudo Genes (internal stop) :: 4 of 16\nPseudo Genes (multiple problems) :: 5 of 16\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_007803648.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013984557.1
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_011566481.1
COORDINATES: similar to AA sequence:RefSeq:WP_011566480.1
COORDINATES: similar to AA sequence:RefSeq:WP_013984560.1
GO:0010007 - magnesium chelatase complex [Evidence IEA]
GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0016851 - magnesium chelatase activity [Evidence IEA]
GO:0015995 - chlorophyll biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011566478.1
COORDINATES: similar to AA sequence:RefSeq:WP_013984562.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_013984563.1
GO:0046872 - metal ion binding [Evidence IEA]; GO:0004659 - prenyltransferase activity [Evidence IEA]
GO:0008299 - isoprenoid biosynthetic process [Evidence IEA]
phytoene/squalene synthase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011566475.1
COORDINATES: similar to AA sequence:RefSeq:WP_017140263.1
COORDINATES: similar to AA sequence:RefSeq:WP_011566472.1
GO:0016166 - phytoene dehydrogenase activity [Evidence IEA]
GO:0016117 - carotenoid biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008028554.1
COORDINATES: similar to AA sequence:RefSeq:WP_008028556.1
GO:0008171 - O-methyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013984570.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
GO:0030494 - bacteriochlorophyll biosynthetic process [Evidence IEA]
chlorophyll synthesis pathway protein BchC
COORDINATES: similar to AA sequence:RefSeq:WP_008280392.1
chlorophyllide a reductase iron protein subunit X
COORDINATES: similar to AA sequence:RefSeq:WP_013984572.1
COORDINATES: similar to AA sequence:RefSeq:WP_013984573.1
COORDINATES: similar to AA sequence:RefSeq:WP_011566465.1
GO:0030494 - bacteriochlorophyll biosynthetic process [Evidence IEA]; GO:0015979 - photosynthesis [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012180177.1
GO:0030096 - plasma membrane-derived thylakoid photosystem II [Evidence IEA]
GO:0015979 - photosynthesis [Evidence IEA]
light-harvesting antenna LH1, beta subunit
COORDINATES: similar to AA sequence:RefSeq:WP_012180178.1
light-harvesting antenna LH1, alpha subunit
COORDINATES: similar to AA sequence:RefSeq:WP_011566461.1
GO:0019684 - photosynthesis, light reaction [Evidence IEA]
photosynthetic reaction center subunit L
COORDINATES: similar to AA sequence:RefSeq:WP_013984577.1
photosynthetic reaction center subunit M
COORDINATES: similar to AA sequence:RefSeq:WP_011566459.1
photosynthetic reaction center cytochrome PufC
COORDINATES: similar to AA sequence:RefSeq:WP_011566458.1
GO:0008661 - 1-deoxy-D-xylulose-5-phosphate synthase activity [Evidence IEA]
GO:0009240 - isopentenyl diphosphate biosynthetic process [Evidence IEA]; GO:0008615 - pyridoxine biosynthetic process [Evidence IEA]; GO:0009228 - thiamine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009825670.1
COORDINATES: similar to AA sequence:RefSeq:WP_011566456.1
COORDINATES: similar to AA sequence:RefSeq:WP_008757832.1
COORDINATES: similar to AA sequence:RefSeq:WP_011566454.1
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005850670.1
GO:0015833 - peptide transport [Evidence IEA]
dipeptide ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_009825668.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008226213.1
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014873215.1
COORDINATES: similar to AA sequence:RefSeq:WP_010399400.1
GO:0008270 - zinc ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005850645.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_013984588.1
acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011566447.1
aminotransferase class V-fold PLP-dependent enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_007254595.1
GO:0005886 - plasma membrane [Evidence IEA]
GO:0015499 - formate transmembrane transporter activity [Evidence IEA]
GO:0015724 - formate transport [Evidence IEA]
formate/nitrite transporter family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007801122.1
PLD nuclease N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009825652.1
YihY/virulence factor BrkB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_005622789.1
DNA starvation/stationary phase protection protein
COORDINATES: similar to AA sequence:RefSeq:WP_008225324.1
COORDINATES: similar to AA sequence:RefSeq:WP_012187229.1
COORDINATES: similar to AA sequence:RefSeq:WP_005850631.1
COORDINATES: similar to AA sequence:RefSeq:WP_005850629.1
COORDINATES: similar to AA sequence:RefSeq:WP_009825647.1
COORDINATES: similar to AA sequence:RefSeq:WP_007118473.1
GO:0003867 - 4-aminobutyrate transaminase activity [Evidence IEA]
GO:0009450 - gamma-aminobutyric acid catabolic process [Evidence IEA]
4-aminobutyrate--2-oxoglutarate transaminase
COORDINATES: similar to AA sequence:RefSeq:WP_019297564.1
COORDINATES: similar to AA sequence:RefSeq:WP_008233346.1
GO:0015930 - glutamate synthase activity [Evidence IEA]; GO:0016638 - oxidoreductase activity, acting on the CH-NH2 group of donors [Evidence IEA]
GO:0006537 - glutamate biosynthetic process [Evidence IEA]
FMN-binding glutamate synthase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_009825643.1
carbon-nitrogen hydrolase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010442675.1
aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_005850608.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007118500.1
COORDINATES: similar to AA sequence:RefSeq:WP_015499704.1
COORDINATES: similar to AA sequence:RefSeq:WP_009830482.1
COORDINATES: similar to AA sequence:RefSeq:WP_009175819.1
COORDINATES: similar to AA sequence:RefSeq:WP_009175972.1
COORDINATES: similar to AA sequence:RefSeq:WP_012177560.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007817801.1
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_020423930.1
CaiB/BaiF CoA-transferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008226859.1
COORDINATES: similar to AA sequence:RefSeq:WP_008229260.1
COORDINATES: similar to AA sequence:RefSeq:WP_008228051.1
pyridoxal phosphate-dependent aminotransferase
COORDINATES: similar to AA sequence:RefSeq:WP_008279388.1
ABC-type transport auxiliary lipoprotein family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013984599.1
COORDINATES: similar to AA sequence:RefSeq:WP_013984600.1
COORDINATES: similar to AA sequence:RefSeq:WP_008225796.1
COORDINATES: similar to AA sequence:RefSeq:WP_002724284.1
GO:0004157 - dihydropyrimidinase activity [Evidence IEA]
GO:0008152 - metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011339333.1
aspartate/glutamate racemase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008560181.1
GO:0004452 - isopentenyl-diphosphate delta-isomerase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011566502.1
GO:0045550 - geranylgeranyl reductase activity [Evidence IEA]
GO:0030494 - bacteriochlorophyll biosynthetic process [Evidence IEA]; GO:0015995 - chlorophyll biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013984620.1
COORDINATES: similar to AA sequence:RefSeq:WP_013984621.1
COORDINATES: similar to AA sequence:RefSeq:WP_011566499.1
GO:0010109 - regulation of photosynthesis [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011566498.1
COORDINATES: similar to AA sequence:RefSeq:WP_011566497.1
2-vinyl bacteriochlorophyllide hydratase
COORDINATES: similar to AA sequence:RefSeq:WP_013984625.1
GO:0016730 - oxidoreductase activity, acting on iron-sulfur proteins as donors [Evidence IEA]
ferredoxin:protochlorophyllide reductase (ATP-dependent) subunit N
COORDINATES: similar to AA sequence:RefSeq:WP_019954334.1
ferredoxin:protochlorophyllide reductase (ATP-dependent) subunit B
COORDINATES: similar to AA sequence:RefSeq:WP_013984627.1
COORDINATES: similar to AA sequence:RefSeq:WP_012180193.1
ferredoxin:protochlorophyllide reductase (ATP-dependent) iron-sulfur ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_009819253.1
GO:0046406 - magnesium protoporphyrin IX methyltransferase activity [Evidence IEA]
magnesium protoporphyrin IX methyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_007206352.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013984631.1
photosynthetic reaction center subunit H
COORDINATES: similar to AA sequence:RefSeq:WP_011566489.1
photosynthetic complex putative assembly protein PuhB
COORDINATES: similar to AA sequence:RefSeq:WP_013984633.1
GO:0003674 - molecular_function [Evidence IEA]
photosynthetic complex assembly protein PuhC
COORDINATES: similar to AA sequence:RefSeq:WP_002720458.1
COORDINATES: similar to AA sequence:RefSeq:WP_008280377.1
GO:0048529 - magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity [Evidence IEA]
magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase
COORDINATES: similar to AA sequence:RefSeq:WP_013984636.1
putative photosynthetic complex assembly protein PuhE
COORDINATES: similar to AA sequence:RefSeq:WP_009819261.1
GO:0003870 - 5-aminolevulinate synthase activity [Evidence IEA]
GO:0006783 - heme biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013984638.1
COORDINATES: protein motif:HMM:NF013884.2
GO:0016747 - acyltransferase activity, transferring groups other than amino-acyl groups [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007803647.1