Thaumasiovibrio subtropicus strain C4V358 plasmid pC4V358, complete sequence.
type: Entry
definition: Thaumasiovibrio subtropicus strain C4V358 plasmid pC4V358, complete sequence.
sequence version: NZ_AP023056.1
sequence date: 2023-05-07
sequence: sequence
division: CON
label: NZ_AP023056.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMD00057776
keyword: RefSeq
source: Thaumasiovibrio subtropicus
organism: Thaumasiovibrio subtropicus
taxonomy: Bacteria; Pseudomonadota; Gammaproteobacteria; Vibrionales; Vibrionaceae; Thaumasiovibrio.
reference: 1
references: 28648725
reference: 2
reference: 3
comment: REFSEQ INFORMATION: The reference sequence is identical to\nAP023056.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Unicycler v. 0.4.7\nGenome Coverage :: 50x\nSequencing Technology :: Illumina MiSeq; ONT MinION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/07/2023 05:56:09\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,013\nCDSs (total) :: 4,849\nGenes (coding) :: 4,784\nCDSs (with protein) :: 4,784\nGenes (RNA) :: 164\nrRNAs :: 13, 12, 12 (5S, 16S, 23S)\ncomplete rRNAs :: 13, 12, 12 (5S, 16S, 23S)\ntRNAs :: 122\nncRNAs :: 5\nPseudo Genes (total) :: 65\nCDSs (without protein) :: 65\nPseudo Genes (ambiguous residues) :: 0 of 65\nPseudo Genes (frameshifted) :: 26 of 65\nPseudo Genes (incomplete) :: 42 of 65\nPseudo Genes (internal stop) :: 12 of 65\nPseudo Genes (multiple problems) :: 13 of 65\nCRISPR Arrays :: 2\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 35361
topology: circular
so has quality: SO_0000988
location: 1..35361
location: region:1-35361:1
RO_0002162: 1891207

NZ_AP023056
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMD00057776
type: BioSample
SIO_000068: biosample

1
title: Thaumasiovibrio occultus gen. nov. sp. nov. and Thaumasiovibrio subtropicus sp. nov. within the family Vibrionaceae, isolated from coral reef seawater off Ishigaki Island, Japan
author: Amin, A.K.M.R.
author: Tanaka, M.
author: Al-Saari, N.
author: Feng, G.
author: Mino, S.
author: Ogura, Y.
author: Hayashi, T.
author: Meirelles, P.M.
author: Thompson, F.L.
author: Gomez-Gil, B.
author: Sawabe, T.
journal: Syst Appl Microbiol
volume: 40
issue: 5
pages: 290-296
year: 2017
pubmed: 28648725
comments: DOI:10.1016/j.syapm.2017.04.003 Erratum:[Syst Appl Microbiol. 2018 Jan;41(1):62-63. PMID: 29055507]

28648725
type: PubMed
SIO_000068: pubmed

2
title: Thaumasiovibrio subtropicus C4V358T whole genome sequence
author: Sawabe, T.
journal: Unpublished

3
title: Direct Submission
author: Sawabe, T.
author: Mino, S.
author: Yu, J.
journal: Submitted (20-APR-2020) Contact:Tomoo Sawabe Hokkaido University, Faculty of Fisheries Sciences; 3-1-1 Minato-cho, Hakodate, Hokkaido 041-8611, Japan

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:35361:1
position: 35361
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-35361:1:source
so part of: sequence
organism: Thaumasiovibrio subtropicus
mol type: genomic DNA
strain: C4V358
isolation source: seawater
type material: type strain of Thaumasiovibrio subtropicus
plasmid: pC4V358
collection date: 2014-07-14

1891207
type: Taxonomy
SIO_000068: taxonomy

TSUB_RS24810
type: Gene
subclass of: SO_0000704
RO_0002162: 1891207
locus tag: TSUB_RS24810
pseudo: true
so part of: sequence
location: complement(join(35180..35361,1..116))
location: region:1-35361:-1
so has part: feature:1-116:-1:exon
so has part: feature:35180-35361:-1:exon
subclass of: SO_0000010

position:1:-1
position: 1
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:35361:-1
position: 35361
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-116:-1:exon

position:116:-1
position: 116
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:35180-35361:-1:exon

position:35180:-1
position: 35180
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

TSUB_RS24810
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1891207
locus tag: TSUB_RS24810
inference: COORDINATES: similar to AA sequence:RefSeq:WP_001963940.1
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: XRE family transcriptional regulator
SIO_010081: TSUB_RS24810
subclass of: SO_0000673
so part of: TSUB_RS24810
location: complement(join(35180..35361,1..116))
location: region:1-35361:-1
so has part: feature:1-116:-1:exon
so has part: feature:35180-35361:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1-116:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:35180-35361:-1:exon

TSUB_RS24815
type: Gene
subclass of: SO_0000704
RO_0002162: 1891207
locus tag: TSUB_RS24815
so part of: sequence
location: complement(88..456)
location: region:88-456:-1
so has part: feature:88-456:-1:exon
subclass of: SO_0000010

position:88:-1
position: 88
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:456:-1
position: 456
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:88-456:-1:exon

TSUB_RS24815
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1891207
locus tag: TSUB_RS24815
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006706575.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system RelE/ParE family toxin
translation: MWNVLTRPLFDEWFLSLDESDQIKVRAGIQVLLERGPQLSRPYADTVEDSKHSNMKELRVQSNGKPIRAFFAFDPERAGIILCGGDKTGDKRFYKKMIPVADAEFDEHLEELRNEKQPIKRT
SIO_010081: TSUB_RS24815
subclass of: SO_0000673
so part of: TSUB_RS24815
location: complement(88..456)
location: region:88-456:-1
so has part: feature:88-456:-1:exon

WP_087021191.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:88-456:-1:exon

TSUB_RS24820
type: Gene
subclass of: SO_0000704
RO_0002162: 1891207
locus tag: TSUB_RS24820
so part of: sequence
location: 1788..2273
location: region:1788-2273:1
so has part: feature:1788-2273:1:exon
subclass of: SO_0000010

position:1788:1
position: 1788
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2273:1
position: 2273
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1788-2273:1:exon

TSUB_RS24820
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1891207
locus tag: TSUB_RS24820
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTEDQVVVVEESCEKTTKYKFQSTDPLGVINMESKAIKVMLKCLFPHVDKDDYARVIAVLDGDHGTTQEDVETCEFLSKTAKQVAWCYDNAEVITQNALNCQPALFNAVVERLRFGTNLTELEKIHGIRNVHISRAMSDLSERHLRLLEISELYHKELGRS
SIO_010081: TSUB_RS24820
subclass of: SO_0000673
so part of: TSUB_RS24820
location: 1788..2273
location: region:1788-2273:1
so has part: feature:1788-2273:1:exon

WP_159064874.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1788-2273:1:exon

TSUB_RS24825
type: Gene
subclass of: SO_0000704
RO_0002162: 1891207
locus tag: TSUB_RS24825
so part of: sequence
location: 2338..3183
location: region:2338-3183:1
so has part: feature:2338-3183:1:exon
subclass of: SO_0000010

position:2338:1
position: 2338
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3183:1
position: 3183
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2338-3183:1:exon

TSUB_RS24825
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1891207
locus tag: TSUB_RS24825
inference: COORDINATES: protein motif:HMM:NF013793.2
GO function: GO:0005524 - ATP binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family protein
translation: MKKTFRAALQDFQASLSSVYRGSGNIVVVNNEKGGVGKTTSAVHVACAAVDAGLKVLCIDVDPQGNFTRTMNGADLSQAYVTDNNFISAADLFYDKLNKDKTYPIRENLHLVAATDEMYTVDESGDKSRVIAAYQNVKRIMTDGAFDLCIIDTPPTVGNRQLAALLLADVLVMPLEVDAFSIKGLEKQLTRLTTSRRAGGLPMPKVSLMPSRVDLRYKLTKDQLASLSEVKVARVTPPIKHSGAISHAISAGKATWDVPVSSRKQVTEMLISAYTSALFLY
SIO_010081: TSUB_RS24825
subclass of: SO_0000673
so part of: TSUB_RS24825
location: 2338..3183
location: region:2338-3183:1
so has part: feature:2338-3183:1:exon

WP_087019223.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2338-3183:1:exon

TSUB_RS24830
type: Gene
subclass of: SO_0000704
RO_0002162: 1891207
locus tag: TSUB_RS24830
so part of: sequence
location: 3280..4206
location: region:3280-4206:1
so has part: feature:3280-4206:1:exon
subclass of: SO_0000010

position:3280:1
position: 3280
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4206:1
position: 4206
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3280-4206:1:exon

TSUB_RS24830
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1891207
locus tag: TSUB_RS24830
inference: COORDINATES: protein motif:HMM:TIGR00180.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParB/RepB/Spo0J family partition protein
translation: MSLDLSGLNNLNLSEAHTSEPKSGVVMVHPKECYVIEQVRVEIDPEKVKELAASIDEIGIETPIKVYPKDNKGYLIHNGEHRWAAANLLGLTELPVFVDEKAKLIEHKGKKLRSKEAIIGQASDNLHRNELTPLDIAHTLSVLLDPPYSMKKGEIAKSFAKPAAWVSRHLNIADLSPFLTQHVKKGLTRNVEVIELLHKIEKIDSAKCKTLIGGEDLSRKFLNEELKRLQTLDVVSGVDSELDEVKDEPLSVTANAEPVSKSIKKHKGTYFKDGAFYDDGELALVIDRGSVDSLIAQLEAWKIAHKDF
SIO_010081: TSUB_RS24830
subclass of: SO_0000673
so part of: TSUB_RS24830
location: 3280..4206
location: region:3280-4206:1
so has part: feature:3280-4206:1:exon

WP_087019226.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3280-4206:1:exon

TSUB_RS24835
type: Gene
subclass of: SO_0000704
RO_0002162: 1891207
locus tag: TSUB_RS24835
so part of: sequence
location: complement(5318..5734)
location: region:5318-5734:-1
so has part: feature:5318-5734:-1:exon
subclass of: SO_0000010

position:5318:-1
position: 5318
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5734:-1
position: 5734
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5318-5734:-1:exon

TSUB_RS24835
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1891207
locus tag: TSUB_RS24835
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005592684.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system HicB family antitoxin
translation: MLYPIAIEAGDDNTAFGVVFPDAAGCFAAGDSYEDALVQAKEALEFYFETLAEDGEVPPLASSVNDHFDKEEFNGWVWALVDIDLESFLGKSRKYNVSLPTLLRKKIDDAVDEHKHYGGFSQFVQEAIVKELARSKGR
SIO_010081: TSUB_RS24835
subclass of: SO_0000673
so part of: TSUB_RS24835
location: complement(5318..5734)
location: region:5318-5734:-1
so has part: feature:5318-5734:-1:exon

WP_087019232.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5318-5734:-1:exon

TSUB_RS24840
type: Gene
subclass of: SO_0000704
RO_0002162: 1891207
locus tag: TSUB_RS24840
so part of: sequence
location: complement(5774..5953)
location: region:5774-5953:-1
so has part: feature:5774-5953:-1:exon
subclass of: SO_0000010

position:5774:-1
position: 5774
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5953:-1
position: 5953
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5774-5953:-1:exon

TSUB_RS24840
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1891207
locus tag: TSUB_RS24840
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007378159.1
GO function: GO:0003729 - mRNA binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system HicA family toxin
translation: MKSRDLIKEVEAAGWVLVRVKGSHHQFKHPDHKLPLTIPHPKKDLGMGLVKAIKKQAGL
SIO_010081: TSUB_RS24840
subclass of: SO_0000673
so part of: TSUB_RS24840
location: complement(5774..5953)
location: region:5774-5953:-1
so has part: feature:5774-5953:-1:exon

WP_087019235.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5774-5953:-1:exon

TSUB_RS24845
type: Gene
subclass of: SO_0000704
RO_0002162: 1891207
locus tag: TSUB_RS24845
so part of: sequence
location: complement(6065..6343)
location: region:6065-6343:-1
so has part: feature:6065-6343:-1:exon
subclass of: SO_0000010

position:6065:-1
position: 6065
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6343:-1
position: 6343
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6065-6343:-1:exon

TSUB_RS24845
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1891207
locus tag: TSUB_RS24845
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSASRASYAKRAWWSLKPWQRDGEGGGSLWRAVASSPAVGDVQFPSEGGLAWGGRGCHASTRGEWVSICSGKEHIATGRRRTFPNPRIEKNR
SIO_010081: TSUB_RS24845
subclass of: SO_0000673
so part of: TSUB_RS24845
location: complement(6065..6343)
location: region:6065-6343:-1
so has part: feature:6065-6343:-1:exon

WP_159064875.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6065-6343:-1:exon

TSUB_RS24850
type: Gene
subclass of: SO_0000704
RO_0002162: 1891207
locus tag: TSUB_RS24850
so part of: sequence
location: complement(6610..6987)
location: region:6610-6987:-1
so has part: feature:6610-6987:-1:exon
subclass of: SO_0000010

position:6610:-1
position: 6610
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6987:-1
position: 6987
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6610-6987:-1:exon

TSUB_RS24850
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1891207
locus tag: TSUB_RS24850
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSESTPKNINAILRSFTVEEIAVIKEELFLLCQTIEEFPKKFDLATERRIKAFAQRDDELSEFFDSLKRWKDKAHAENSNFQTQLLDSYKAEVGKFKPAYWPFIITGLLSSLLTAMIIISVLYLL
SIO_010081: TSUB_RS24850
subclass of: SO_0000673
so part of: TSUB_RS24850
location: complement(6610..6987)
location: region:6610-6987:-1
so has part: feature:6610-6987:-1:exon

WP_087019238.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6610-6987:-1:exon

TSUB_RS24855
type: Gene
subclass of: SO_0000704
RO_0002162: 1891207
gene: stbB
locus tag: TSUB_RS24855
so part of: sequence
location: complement(7022..7738)
location: region:7022-7738:-1
so has part: feature:7022-7738:-1:exon
subclass of: SO_0000010

position:7022:-1
position: 7022
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7738:-1
position: 7738
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7022-7738:-1:exon

TSUB_RS24855
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1891207
gene: stbB
locus tag: TSUB_RS24855
inference: COORDINATES: protein motif:HMM:NF041292.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: StbB family protein
translation: MNQYLKIAVVNTSGNVGKTTVVDSLLKPRLPEAHVLKLETINNDGSEDKTMSSANLIAVQEEIDMHDLLIIDVGASNIEKWLQNLEKNSGSHEDIDYYIVPVTPQSKQQIDTISTIKMLKNIGVDTDAIRVIFNQVDDTESLDSQFGVIFENRIAKELKLKSVNGLTIPHSPLFELMNDLGTTLADFVDDDTDYKAAIRAASKEERAELSARRTGVRLAKNFNEKLDHVYANLKIEAQ
SIO_010081: TSUB_RS24855
subclass of: SO_0000673
so part of: TSUB_RS24855
location: complement(7022..7738)
location: region:7022-7738:-1
so has part: feature:7022-7738:-1:exon

WP_087019241.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7022-7738:-1:exon

TSUB_RS24860
type: Gene
subclass of: SO_0000704
RO_0002162: 1891207
locus tag: TSUB_RS24860
so part of: sequence
location: complement(7735..8202)
location: region:7735-8202:-1
so has part: feature:7735-8202:-1:exon
subclass of: SO_0000010

position:7735:-1
position: 7735
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8202:-1
position: 8202
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7735-8202:-1:exon

TSUB_RS24860
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1891207
locus tag: TSUB_RS24860
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MEENLKQISDELSKKGISKQKVMARYVDVIDRLYSMGYSYKFMVERINFHLTTADQAVSYGVFRQMLSRARGKNKADTPSKEKEVASMVDSESLDENDFNHWKRNIPHLSKDIYQDAIEANLTLDEVLNMGTQTTQSLIMKVTTAANIRSRRNKK
SIO_010081: TSUB_RS24860
subclass of: SO_0000673
so part of: TSUB_RS24860
location: complement(7735..8202)
location: region:7735-8202:-1
so has part: feature:7735-8202:-1:exon

WP_087019244.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7735-8202:-1:exon

TSUB_RS24865
type: Gene
subclass of: SO_0000704
RO_0002162: 1891207
locus tag: TSUB_RS24865
so part of: sequence
location: 8510..8854
location: region:8510-8854:1
so has part: feature:8510-8854:1:exon
subclass of: SO_0000010

position:8510:1
position: 8510
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8854:1
position: 8854
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8510-8854:1:exon

TSUB_RS24865
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1891207
locus tag: TSUB_RS24865
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017111696.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: relaxosome protein
translation: MNNKSHVISFRLSDEEFKPYKEALDSTGLSKSEFFRSVFLKGQYHFEVRENPPMEYDKLLFIFNKSSNNLNQISRKINQSHRSGIVSERLYLNAVNQLVSIEQLMMSVIDAGKS
SIO_010081: TSUB_RS24865
subclass of: SO_0000673
so part of: TSUB_RS24865
location: 8510..8854
location: region:8510-8854:1
so has part: feature:8510-8854:1:exon

WP_087019247.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8510-8854:1:exon

TSUB_RS24870
type: Gene
subclass of: SO_0000704
RO_0002162: 1891207
locus tag: TSUB_RS24870
so part of: sequence
location: 8838..12878
location: region:8838-12878:1
so has part: feature:8838-12878:1:exon
subclass of: SO_0000010

position:8838:1
position: 8838
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12878:1
position: 12878
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8838-12878:1:exon

TSUB_RS24870
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1891207
locus tag: TSUB_RS24870
inference: COORDINATES: protein motif:HMM:NF037421.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: LPD7 domain-containing protein
translation: MLARVSGGDSGVIEYLEQGIKNGREQSRDELDLRHPIDGNIALTQCMIKQMADENQKNNYLHITLSFAEKDITSEKMQAAYSEYKETVLAAYSEDEVNVYAEIHYPKVKSYTDKRTGETIQRHPHIHMVIPTKNLASGKALAPFGRYKDNIDYHDAIQEHVNRKFELDSPYDHQRDYRISGRDEFISRYKGDDFKGNNRKLKQELADRIMSGEIRTSEKLHSALADIGEVRYDKQSDGSTHLSVKPFGEARFSRFKEPIFSPAMLDGQQLRQKPSQEVVEATVHEWRTCRSLEVKYIHPSSAKKRGAYRDLDEDAKLAALSQQHSENLTHYNLSPRGQDDPTTNATISFKGANHKLKKAIVFGLKNEAVTSERDYVTFLKKFGDVKLAKAGTDDRYYKVKPQGTNRFVRLKEDVFKPTQFTKLTHRDNASASKQKLHAQALTLSQVMTVKPDTLSHSTDTTEKVINEPERNPTDDIISQHIRAHRQAHGHKPRFKPTKFRKPQSFANVSRGLPSLSERTLDGSRKAERPQYTSSERRNQRAGVLFDHARHNLVKRGERNPNPELRRNVPDRRLTSEIVFNYRKAQESAQCQTLREITLKRVIDPERVLSRLKTTHGLYGHEYEAKRTKFGAKISKNGALIPVERFLQTEINMTAKEAKQYLKETYREQRNDQDAHFALNQLAFVSNHGRNHNNPRATLAIFSRLQAKERYNMRYETMSDKNEKNFLEEEHEQDDVTMTHIHEQLQKQRQLMQNLTMRMPDVMAVPDKKDSTKIDFHHKDSADKKPLFRDEGEKISFDRNADDNAVHVGLQLAAEKFGAVKIKGTKAFKEQVLDIAAAKDMNIRFADKNMQREFIERKQTFKVAESMTNATAMNTNETIDSLKGRAIELHDRSNHTQDTLVKESLQEQVKTITQNQLPKLTDQSPFDKTTHPDLHSQFENGVITHLENIANKVKSEQGQQKGQQVTDFGAAPYQDDPKNSDSYFIELNGKKKVWGVGLQDAIGKTQLRVGDFITLNNKGKEAVTVEVDERNDNGDIIGTKTIETHRNAWSIVKHPNLSEHHSNQQAEKENMDANLNEMTEDGQQEKLTESVRTLKSQLLRSSSDTEAQAIVTAAEQRKHGDIEGMNETLKDGLDVELPADWNGKITLANSRMVFDGSVEKAQPVKEGESPEFRGVYAERTNGEKAFLRDCYDKNHAEQLAKQLMTVDALAQSDTQKVEETLKTIKDLESIETQSEDEQAEQYVTTSKSGTPHINNNGGRFKVEYVWNDTDQHIDMTVNGQPPSEVLDSDKIRALKQVDDFAAKFNDQQLKSGQLDMKQAQGATPVNQDYDNEMKPIRDSDTKAAVMN
SIO_010081: TSUB_RS24870
subclass of: SO_0000673
so part of: TSUB_RS24870
location: 8838..12878
location: region:8838-12878:1
so has part: feature:8838-12878:1:exon

WP_087019250.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8838-12878:1:exon

TSUB_RS24875
type: Gene
subclass of: SO_0000704
RO_0002162: 1891207
locus tag: TSUB_RS24875
so part of: sequence
location: complement(13104..13406)
location: region:13104-13406:-1
so has part: feature:13104-13406:-1:exon
subclass of: SO_0000010

position:13104:-1
position: 13104
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13406:-1
position: 13406
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13104-13406:-1:exon

TSUB_RS24875
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1891207
locus tag: TSUB_RS24875
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MEALLDSLWEPVIAFTALIMLYASLRGKHNRIVAWASLGCLLGSLSLYLGIENIQLDHTLALVCFWLCVAHAGLASTWMAIDLFPAYLALRRFLKKERQE
SIO_010081: TSUB_RS24875
subclass of: SO_0000673
so part of: TSUB_RS24875
location: complement(13104..13406)
location: region:13104-13406:-1
so has part: feature:13104-13406:-1:exon

WP_087019252.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13104-13406:-1:exon

TSUB_RS24880
type: Gene
subclass of: SO_0000704
RO_0002162: 1891207
locus tag: TSUB_RS24880
so part of: sequence
location: complement(13499..13846)
location: region:13499-13846:-1
so has part: feature:13499-13846:-1:exon
subclass of: SO_0000010

position:13499:-1
position: 13499
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13846:-1
position: 13846
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13499-13846:-1:exon

TSUB_RS24880
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1891207
locus tag: TSUB_RS24880
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNGVYIIDTKANNADFSDSNIFLSTILENELKGANFTNSVIRMTEFRNNNLEFSKFDNSTISTSFVGNNLSQASFIGTNFDKQDPCEFFKSNDNWEMAFRDQSCGKSIPKKKIDF
SIO_010081: TSUB_RS24880
subclass of: SO_0000673
so part of: TSUB_RS24880
location: complement(13499..13846)
location: region:13499-13846:-1
so has part: feature:13499-13846:-1:exon

WP_221274660.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13499-13846:-1:exon

TSUB_RS24885
type: Gene
subclass of: SO_0000704
RO_0002162: 1891207
locus tag: TSUB_RS24885
so part of: sequence
location: complement(14774..15271)
location: region:14774-15271:-1
so has part: feature:14774-15271:-1:exon
subclass of: SO_0000010

position:14774:-1
position: 14774
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15271:-1
position: 15271
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14774-15271:-1:exon

TSUB_RS24885
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1891207
locus tag: TSUB_RS24885
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005430771.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKKKILLAAMTALSMTSIQPAIAGSADCAIWLCLPAGFPSGCGDAKSAFKNRIKKLKPPLPALSSCLVSGDVSGVPETNVSATNGKIAYYPPYRYCAHMPGGANGSSGNCSEWRTEPEKWLKGQTCSGQRDDPCQLYGYVDVKIDGISTGTQIYKLGTGDIIKVL
SIO_010081: TSUB_RS24885
subclass of: SO_0000673
so part of: TSUB_RS24885
location: complement(14774..15271)
location: region:14774-15271:-1
so has part: feature:14774-15271:-1:exon

WP_192867834.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14774-15271:-1:exon

TSUB_RS24890
type: Gene
subclass of: SO_0000704
RO_0002162: 1891207
locus tag: TSUB_RS24890
so part of: sequence
location: complement(15286..17049)
location: region:15286-17049:-1
so has part: feature:15286-17049:-1:exon
subclass of: SO_0000010

position:15286:-1
position: 15286
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17049:-1
position: 17049
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15286-17049:-1:exon

TSUB_RS24890
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1891207
locus tag: TSUB_RS24890
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017111686.1
GO component: GO:0016020 - membrane [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type IV secretory system conjugative DNA transfer family protein
translation: MKIVGIVFLFLLLTAFFLVAGQYAAAFAMLKQAGMDYSNISYDTFYYYWLDYKDLEWAKKYLAVGYAFGGLVSSFPLIIVGAVLFGMYKPEELHGSARFANSVELRKSGLFPRKKKAEPEKPVLLLGRGGKGSYKNQLIQFEGQQFAGVEAPTRSGKGVGIVIPNALNYSESLVTLDIKLENFEKTAGQRAAMGQEVYIFCPDGYSTTALEASNGTVRSHCWNPFDYVRRDAKFRVGDLMVITNALYPTGSGGKDDMWNELAGKLFTGLSLFMLDIEKITHRQASFPYLIELKSSKDGLDKWMESQLDAGYCSDETKREFADFMGAAKETKGSILSNFNAPLAVFSDQVCAASVSKSDFDFRDLRKKKMSIYVGVKPANIPRFQKLLNLFFEQLINENTKVLPELDPALKYQCLCLLDEFPALGRVQIIDKAIGYAAGYNMRFLMIYQSEAQLEKKDVYGKEGAKALLDNLAVRVIYPPKEVTEQVKRISETLGYKTVKERTVSRTSGKGSTRTRNETKQKRALMMPQEIVELGFEKHKSGLGINTLMIMENMRPFKAKKIIYFEEKEFQAKVDYSLNNVPSIPALF
SIO_010081: TSUB_RS24890
subclass of: SO_0000673
so part of: TSUB_RS24890
location: complement(15286..17049)
location: region:15286-17049:-1
so has part: feature:15286-17049:-1:exon

WP_087019138.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15286-17049:-1:exon

TSUB_RS24895
type: Gene
subclass of: SO_0000704
RO_0002162: 1891207
gene: virB11
locus tag: TSUB_RS24895
so part of: sequence
location: complement(17049..18035)
location: region:17049-18035:-1
so has part: feature:17049-18035:-1:exon
subclass of: SO_0000010

position:18035:-1
position: 18035
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17049-18035:-1:exon

TSUB_RS24895
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1891207
gene: virB11
locus tag: TSUB_RS24895
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006714444.1
GO component: GO:0043684 - type IV secretion system complex [Evidence IEA]
GO process: GO:0044097 - secretion by the type IV secretion system [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: P-type DNA transfer ATPase VirB11
translation: MHSEFDKSTTIRTLLAESGLQAILDTPGLTELAINEPYVVLYDTGGDWQEKRLDMLSYDFLSELCQAFAVFNNLSVDEGIFSIKLPDGERGQVVMPPVTQDGIISMTIRKPSLDRFDLASYQSSGRFAFTQKSGEEKECDINSRLSELKAQGDIAGFFRLAVESNKNILLVGGTGSGKTTVMKAMVDCYPTSSRLITVEDVHELSLPNHPNHVHLFYRKNTPVTPKLLIESCMRMKPDHVLLAELRGDETWTYLELLNTGHAGSITTVHANSSRDAYARITSLIKQSPVGMGLEYEFINRTVKESIDVVAFFKRTHLTELIFTAEEEV
SIO_010081: TSUB_RS24895
subclass of: SO_0000673
so part of: TSUB_RS24895
location: complement(17049..18035)
location: region:17049-18035:-1
so has part: feature:17049-18035:-1:exon

WP_087019136.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17049-18035:-1:exon

TSUB_RS24900
type: Gene
subclass of: SO_0000704
RO_0002162: 1891207
gene: virB10
locus tag: TSUB_RS24900
so part of: sequence
location: complement(18070..19341)
location: region:18070-19341:-1
so has part: feature:18070-19341:-1:exon
subclass of: SO_0000010

position:18070:-1
position: 18070
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:19341:-1
position: 19341
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18070-19341:-1:exon

TSUB_RS24900
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1891207
gene: virB10
locus tag: TSUB_RS24900
inference: COORDINATES: protein motif:HMM:NF038091.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type IV secretion system protein VirB10
translation: MNEIENATDGIESTVDRGEVDLRTKDKQKRNVIIFLIVIVVMLIVAVGLGFTLYSLNTSAMGSEQEQFELDDGGIIKGESDIGNESFLTQIRQRAQLEQKQAEAEAARQKAAEEAAAKAETEKEVAEANIEPEKPVLEYRTEPRVRSREPLPQSQSQPQPVATAANSSSSEPKPLTKEERQMQGSVMVNASGSDVAYGGGGDSLSDGNSPIAQRYDNSYNGSSFESGSATVRPPRSLDFLLKHGTSIPCALQTEIISEYNGYVICRTTQDIYSANGNALLIERGSTITGQQNVALEQGKARLFVIWSNVETPNGVSVRIDSLGTGSLGAAGVDVWVDYHYAKRFGGALLLSFIEDGLDVLNSNLKDNHPDTSFDNSTQSMDSLANEVLKHTINIPPTGYALVGSRLNILVVRDIDMSNVYKFQ
SIO_010081: TSUB_RS24900
subclass of: SO_0000673
so part of: TSUB_RS24900
location: complement(18070..19341)
location: region:18070-19341:-1
so has part: feature:18070-19341:-1:exon

WP_087019134.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18070-19341:-1:exon

TSUB_RS24905
type: Gene
subclass of: SO_0000704
RO_0002162: 1891207
locus tag: TSUB_RS24905
so part of: sequence
location: complement(19334..20095)
location: region:19334-20095:-1
so has part: feature:19334-20095:-1:exon
subclass of: SO_0000010

position:19334:-1
position: 19334
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:20095:-1
position: 20095
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19334-20095:-1:exon

TSUB_RS24905
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1891207
locus tag: TSUB_RS24905
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017111683.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: TrbG/VirB9 family P-type conjugative transfer protein
translation: MIRGLILLMLSVFSLSVSAIEVPSSRGFDKRVVSTKYNPADVIEIHTKVGKATLIQFEKGEAIIGEATGLGMGDAAAWGFAVRGNSIFLKPVAKNPDTNLIVVTNKGRTYVFDLKTVKRNPHYYIALEYDPVVDPTKGKPRVPCSLHDRNFIYFKQGDLELSPTHVWDDGVFTCMKFQDNLELPLVFQVTNEGIESLVNYHIEEDILIIHTVAPKFHLRLGTQVLGLDSAYTRSRGYNASKTTVNQERVTIHE
SIO_010081: TSUB_RS24905
subclass of: SO_0000673
so part of: TSUB_RS24905
location: complement(19334..20095)
location: region:19334-20095:-1
so has part: feature:19334-20095:-1:exon

WP_246616532.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19334-20095:-1:exon

TSUB_RS24910
type: Gene
subclass of: SO_0000704
RO_0002162: 1891207
locus tag: TSUB_RS24910
so part of: sequence
location: complement(20092..20892)
location: region:20092-20892:-1
so has part: feature:20092-20892:-1:exon
subclass of: SO_0000010

position:20092:-1
position: 20092
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:20892:-1
position: 20892
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20092-20892:-1:exon

TSUB_RS24910
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1891207
locus tag: TSUB_RS24910
inference: COORDINATES: protein motif:HMM:NF016238.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type IV secretion system protein
translation: MSDVMIDSSPHIGELPEVSEKNVYEKNLNSLKKEKEAELNKAAEIYLKEASDFHKDSVDMQKSKAKYALFAAIGAFLLSILSVTALVIALPFKTVVPYVITVDNNTGQTQTALAMSDAKKTTYGEALDKYWLNQYVIQRNTYDWYTIQSGYDFVNLTSTTKVMAAYANFISSDNSPVKVFGENRSIEIKTDGVSFLPSSSDTNVAQVRFTRTIRDRNGRESATFKPTQWIATITWEYTKELKYENERLINPLQFIVTSYRESEILK
SIO_010081: TSUB_RS24910
subclass of: SO_0000673
so part of: TSUB_RS24910
location: complement(20092..20892)
location: region:20092-20892:-1
so has part: feature:20092-20892:-1:exon

WP_087019132.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20092-20892:-1:exon

TSUB_RS24915
type: Gene
subclass of: SO_0000704
RO_0002162: 1891207
locus tag: TSUB_RS24915
so part of: sequence
location: complement(21069..22034)
location: region:21069-22034:-1
so has part: feature:21069-22034:-1:exon
subclass of: SO_0000010

position:21069:-1
position: 21069
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:22034:-1
position: 22034
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21069-22034:-1:exon

TSUB_RS24915
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1891207
locus tag: TSUB_RS24915
inference: COORDINATES: protein motif:HMM:NF016491.2
GO process: GO:0030255 - protein secretion by the type IV secretion system [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type IV secretion system protein
translation: MIAADIFLKIDTALGSSINLMYPLIKTIILPVFVAGVLLYTAVKAYNILVTDSDIYRTLAIDLGRLFICSMVIGTADYYGSLVVPVFTGAADDIVGVLTGGVSIGSTIDNLIDKFINVVQHLFENSLSIWDDWILIIIQLLTLLIYGVLAIILLGVAITTIAAAKLLLALVLVVGPIFICFAFFPSTKNWFSQWVGLCLNYIFVSILFPVAFMLLLSIIEDFIFPPAMTDLDGMFHLEHVISTAIVLFAGYKISGMIPSVASSLTGGLGMSSIGDITNRNGSQRKSKSSSKDSPEPKKDGMLKKGVQAAWGKLNRKGSVEA
SIO_010081: TSUB_RS24915
subclass of: SO_0000673
so part of: TSUB_RS24915
location: complement(21069..22034)
location: region:21069-22034:-1
so has part: feature:21069-22034:-1:exon

WP_087019130.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:21069-22034:-1:exon

TSUB_RS24920
type: Gene
subclass of: SO_0000704
RO_0002162: 1891207
locus tag: TSUB_RS24920
so part of: sequence
location: complement(22039..22272)
location: region:22039-22272:-1
so has part: feature:22039-22272:-1:exon
subclass of: SO_0000010

position:22039:-1
position: 22039
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:22272:-1
position: 22272
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22039-22272:-1:exon

TSUB_RS24920
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1891207
locus tag: TSUB_RS24920
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKEIILLSSLLVCFCVNANSFPTLEEQIESKEVRMEVFKKCLRIAKSDWPKACHENIEAREIERQKQKDALPSWLKG
SIO_010081: TSUB_RS24920
subclass of: SO_0000673
so part of: TSUB_RS24920
location: complement(22039..22272)
location: region:22039-22272:-1
so has part: feature:22039-22272:-1:exon

WP_087019128.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:22039-22272:-1:exon

TSUB_RS24925
type: Gene
subclass of: SO_0000704
RO_0002162: 1891207
locus tag: TSUB_RS24925
so part of: sequence
location: complement(22330..22575)
location: region:22330-22575:-1
so has part: feature:22330-22575:-1:exon
subclass of: SO_0000010

position:22330:-1
position: 22330
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:22575:-1
position: 22575
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22330-22575:-1:exon

TSUB_RS24925
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1891207
locus tag: TSUB_RS24925
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKKLFLLSALLMCFFASVSANEHDFPTLEEQVESKEVRDEVLSRCLKIKKSVWPKACHENIEANKIVSQRLKDERPPWLKL
SIO_010081: TSUB_RS24925
subclass of: SO_0000673
so part of: TSUB_RS24925
location: complement(22330..22575)
location: region:22330-22575:-1
so has part: feature:22330-22575:-1:exon

WP_087019126.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:22330-22575:-1:exon

TSUB_RS24930
type: Gene
subclass of: SO_0000704
RO_0002162: 1891207
locus tag: TSUB_RS24930
so part of: sequence
location: complement(22587..23219)
location: region:22587-23219:-1
so has part: feature:22587-23219:-1:exon
subclass of: SO_0000010

position:22587:-1
position: 22587
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:23219:-1
position: 23219
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22587-23219:-1:exon

TSUB_RS24930
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1891207
locus tag: TSUB_RS24930
inference: COORDINATES: protein motif:HMM:NF019608.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type IV secretion system protein
translation: MKNKILAVVFFVATPAFSAGIPVVDAVGNAQFAMETAQNAIRFQQELQQSITQYNELINQGDFYADMVNGHWNIEEIFNQPDFVKNIATANWQDAFDAIDPSSLRSAYGLESVIPEVQAKFDNFIKQNEMLKTMYEQSFDRQARIENLHSQMSSATTPAQKDDLANAIKYEQMQIQNDAQILDNMNKLIAHELKLEVERRAANYSNAVFN
SIO_010081: TSUB_RS24930
subclass of: SO_0000673
so part of: TSUB_RS24930
location: complement(22587..23219)
location: region:22587-23219:-1
so has part: feature:22587-23219:-1:exon

WP_087019124.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:22587-23219:-1:exon

TSUB_RS24935
type: Gene
subclass of: SO_0000704
RO_0002162: 1891207
locus tag: TSUB_RS24935
so part of: sequence
location: complement(23216..25597)
location: region:23216-25597:-1
so has part: feature:23216-25597:-1:exon
subclass of: SO_0000010

position:23216:-1
position: 23216
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:25597:-1
position: 25597
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23216-25597:-1:exon

TSUB_RS24935
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1891207
locus tag: TSUB_RS24935
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017819241.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: conjugal transfer protein TraE
translation: MSKDKSRNSGSSGDKSLADLIPDYGLSLSKNCVSIGRDKLMAVVKLSGVSFENKSLSVLESENEVIKSFLEQLLKQFQDKIGIWTHLIKTKAKFCEEYHFDNDFVSRLNEKYMKSFVGKSFFEVGYYISFIIKTSDIEEGIEKIEDIVSQSVSVLNTFGASAVSIEQDGLIMRNYPLEFLQVLLSGNQSEVIPLYRRKAKEVICNTDVHFGYDMFEYRTNNSNESRFGVAFDLDAYPDESYYGMWDFLLNQPQELVLTQSFIGKSPLAFARSTKQKRNELRSSSSFTNEDLETIDIAEAGVANGKLYFGDYHCSLVVISDSKHTILEEAGEVKNNFLIRGTSFKKSTLNNVNAFLSVMPASKERALSQPKTTTNLSHTFSLHNYPSGKKKGNPIGDGSAVVPLKTVGDSLYYFNSHASEIGKDVTGEKYAGHTMCLGASGTGKTTLEGFLTAYYTRWNPQLFCIDYNRSTELFIRAYGGQYFAFKEGTDTGLNPFQLEDTPSLRAFLHRLVCRLGADKTGEVSPLDDKLAKTAIDTVFRLRHADRRLSNLLQSIPEGDFKMRLSKWTHAGKGTLAWALDSPVNRFNPAAMDRIGFDTTVLLDTTSNKSGHPACEPVLAVLFYLKSLMQKEGRLMMSIVEEFWMPANFPLTQSIMKNILKAGRLKNEFMFLSSQSPEDAINCEIFPAIVQQTATKIYLPNPDAEYPSYEKCNVSKGEFEQLKKLGKQSRTFLIKQSNDSIFAKLDLGGFDEFLPIISGDDHVISLCESVRQEVGDNPDRWIPELIYRLNSKEAV
SIO_010081: TSUB_RS24935
subclass of: SO_0000673
so part of: TSUB_RS24935
location: complement(23216..25597)
location: region:23216-25597:-1
so has part: feature:23216-25597:-1:exon

WP_246616533.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:23216-25597:-1:exon

TSUB_RS24940
type: Gene
subclass of: SO_0000704
RO_0002162: 1891207
locus tag: TSUB_RS24940
so part of: sequence
location: complement(25922..26239)
location: region:25922-26239:-1
so has part: feature:25922-26239:-1:exon
subclass of: SO_0000010

position:25922:-1
position: 25922
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:26239:-1
position: 26239
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:25922-26239:-1:exon

TSUB_RS24940
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1891207
locus tag: TSUB_RS24940
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MDLLRDVLKGQSAKVFFSVFMALIFANPALASGLASGTSELTAFKDWVWTLTGIFVFLFIIVQAVRAMMDQITWLEFALSIVKVVVVGGCITVVTWAMGVFGVAP
SIO_010081: TSUB_RS24940
subclass of: SO_0000673
so part of: TSUB_RS24940
location: complement(25922..26239)
location: region:25922-26239:-1
so has part: feature:25922-26239:-1:exon

WP_087019118.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:25922-26239:-1:exon

TSUB_RS24945
type: Gene
subclass of: SO_0000704
RO_0002162: 1891207
locus tag: TSUB_RS24945
so part of: sequence
location: complement(26256..26849)
location: region:26256-26849:-1
so has part: feature:26256-26849:-1:exon
subclass of: SO_0000010

position:26256:-1
position: 26256
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:26849:-1
position: 26849
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:26256-26849:-1:exon

TSUB_RS24945
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1891207
locus tag: TSUB_RS24945
inference: COORDINATES: protein motif:HMM:NF013618.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: lytic transglycosylase domain-containing protein
translation: MILEASVVLQLAASCQVGTSIEPNIIQRIAEIESSYRPLAVAIVGLEGAKRFQQPETIEEASSFIESLDERNFNYSVGLMQVNKTNFEDTGLDFESAFDPCKSIEAGAKIFHNCLVRAEKAFPSNSQTELLNKAASCYYSGNFKRGFVKEGDNQLSYVDKFSGIAYTQKTTTANQEEKNLEKPVPKSHEHWDVFKDF
SIO_010081: TSUB_RS24945
subclass of: SO_0000673
so part of: TSUB_RS24945
location: complement(26256..26849)
location: region:26256-26849:-1
so has part: feature:26256-26849:-1:exon

WP_087019116.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:26256-26849:-1:exon

TSUB_RS24950
type: Gene
subclass of: SO_0000704
RO_0002162: 1891207
locus tag: TSUB_RS24950
so part of: sequence
location: complement(26846..27184)
location: region:26846-27184:-1
so has part: feature:26846-27184:-1:exon
subclass of: SO_0000010

position:26846:-1
position: 26846
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:27184:-1
position: 27184
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:26846-27184:-1:exon

TSUB_RS24950
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1891207
locus tag: TSUB_RS24950
inference: COORDINATES: protein motif:HMM:NF017333.2
GO function: GO:0003677 - DNA binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: TraY domain-containing protein
translation: MNITLRIDSTTNQKLSVSSESSGRSKKMEAKNRVLDYIARFSRWDKTSIQSVDGSYSHVSFDLNIEENKLLNHFFSVNKKGMGVTRKTDAAALILQQHLSLFPDAPTYGDRE
SIO_010081: TSUB_RS24950
subclass of: SO_0000673
so part of: TSUB_RS24950
location: complement(26846..27184)
location: region:26846-27184:-1
so has part: feature:26846-27184:-1:exon

WP_087019114.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:26846-27184:-1:exon

TSUB_RS24955
type: Gene
subclass of: SO_0000704
RO_0002162: 1891207
locus tag: TSUB_RS24955
so part of: sequence
location: complement(28187..29335)
location: region:28187-29335:-1
so has part: feature:28187-29335:-1:exon
subclass of: SO_0000010

position:28187:-1
position: 28187
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:29335:-1
position: 29335
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:28187-29335:-1:exon

TSUB_RS24955
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1891207
locus tag: TSUB_RS24955
inference: COORDINATES: protein motif:HMM:NF013235.2
GO function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO process: GO:0006270 - DNA replication initiation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication initiation protein
translation: MSKMKVSTQPKHYIVPHSFLEGRQDLSKNAKRLLALAMIALQQERNKLYEDDPEGKVQVEGLPRKAQQMHYHNYMPSEEMIGRLPRVLKFDIYTLEQFFRTSGDSLRKTLKRTSESMVGRFISVSDKDTFTVMTPIPYAKYVAGSHLELSVTEQAIPQLFNHSRGYSSTELSLWCELESQHSQRLLEIISRHKERNNEKFEIDDIKRMLGVDYVVITNQEEAEESGQKVGDYRLRFNEKTHMMEKIPRYRAFRDFKRSVLDIAFGEIIQKSRGVWTPTDEKGVGYKLHRRGRAYSVIEICLQYQPDQTGNVPEKLVTPVEVSSVDPALAIIEELEAQIIAHLHTPVSKDEIDLYRKLAQRAGISIKPDIVQRIKMIESELGK
SIO_010081: TSUB_RS24955
subclass of: SO_0000673
so part of: TSUB_RS24955
location: complement(28187..29335)
location: region:28187-29335:-1
so has part: feature:28187-29335:-1:exon

WP_087019112.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:28187-29335:-1:exon

TSUB_RS24960
type: Gene
subclass of: SO_0000704
RO_0002162: 1891207
locus tag: TSUB_RS24960
so part of: sequence
location: 30643..31164
location: region:30643-31164:1
so has part: feature:30643-31164:1:exon
subclass of: SO_0000010

position:30643:1
position: 30643
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:31164:1
position: 31164
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:30643-31164:1:exon

TSUB_RS24960
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1891207
locus tag: TSUB_RS24960
inference: COORDINATES: protein motif:HMM:NF036875.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTKRTAKARIENKTGKDIKIATLNHKYSDDYHNQETFGLIKDGDVSGNLTVEYNTGFGTTGRDWWLVTWQYDEESVYYTDPNNFRGAIDYLERQVNSVISDNKDIPDELKPAVELASSALNSESTKGFKQHILRSEDEGKVVRIVLYKDGTVTIKSESGKSHTVYHSKKLDKH
SIO_010081: TSUB_RS24960
subclass of: SO_0000673
so part of: TSUB_RS24960
location: 30643..31164
location: region:30643-31164:1
so has part: feature:30643-31164:1:exon

WP_087019108.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:30643-31164:1:exon

TSUB_RS24965
type: Gene
subclass of: SO_0000704
RO_0002162: 1891207
locus tag: TSUB_RS24965
so part of: sequence
location: complement(31233..31631)
location: region:31233-31631:-1
so has part: feature:31233-31631:-1:exon
subclass of: SO_0000010

position:31233:-1
position: 31233
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:31631:-1
position: 31631
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:31233-31631:-1:exon

TSUB_RS24965
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1891207
locus tag: TSUB_RS24965
inference: COORDINATES: protein motif:HMM:NF020345.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Mor transcription activator family protein
translation: MQCETKLSIDLSKINPKILPPKIQILTRLIGLEEVYSLVVHFGGKEVYIPKDPSNTTLINKISKSSIEELSREFGGTYLSLPTHQKFYLQDRNRNIYNDLCEGYSRSAVAEKYNLGVRQVANIKKEMAKDDR
SIO_010081: TSUB_RS24965
subclass of: SO_0000673
so part of: TSUB_RS24965
location: complement(31233..31631)
location: region:31233-31631:-1
so has part: feature:31233-31631:-1:exon

WP_159064871.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:31233-31631:-1:exon

TSUB_RS24970
type: Gene
subclass of: SO_0000704
RO_0002162: 1891207
locus tag: TSUB_RS24970
so part of: sequence
location: 31773..32132
location: region:31773-32132:1
so has part: feature:31773-32132:1:exon
subclass of: SO_0000010

position:31773:1
position: 31773
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:32132:1
position: 32132
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:31773-32132:1:exon

TSUB_RS24970
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1891207
locus tag: TSUB_RS24970
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MLITQEQVHNVVEMILNSVYKGEFSLPKESIINNTYKFSINEVASWIGIETETLSFVVSELCSALIQIQVSYSVNTCSHFELGVVFNRVGYRSGMIYVTINKELPINIFLNTTKVTYAS
SIO_010081: TSUB_RS24970
subclass of: SO_0000673
so part of: TSUB_RS24970
location: 31773..32132
location: region:31773-32132:1
so has part: feature:31773-32132:1:exon

WP_087019104.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:31773-32132:1:exon

TSUB_RS24980
type: Gene
subclass of: SO_0000704
RO_0002162: 1891207
locus tag: TSUB_RS24980
so part of: sequence
location: complement(32560..33942)
location: region:32560-33942:-1
so has part: feature:32560-33942:-1:exon
subclass of: SO_0000010

position:32560:-1
position: 32560
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:33942:-1
position: 33942
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:32560-33942:-1:exon

TSUB_RS24980
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1891207
locus tag: TSUB_RS24980
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKDTLTFIFNGTNESFEENGWEWNNINGFIAREINQNQGIITYPNNSLVDVSRNHTGCLLNGIGEKYVASSSGRDATLTPQSWLERIGFDDKSHDYQELNNILKVVTGQGLEVTMLPDFLQSGTGIGRLYNTQRAILWLYKRLEAEIDETTKDPIISDLNIHVVGWSRGATSAIYFMTCIGNLLKLDKFHKFNVTISSVLFDPVFGASKNEYHTDKRFTELNITQDKNNPTHYYLNGCKVDKIVNILALHEMRRNFFPQTLSTIVEKDTWMRRGLDSQDRPIVEVVMPGIHDDQATSVGGMSSVLEIEDANMLAPSYKVCKDLVSRVFNYNSSIQSRKTILRLLNFLGKEDNWIKYKSISTDIGVLKKITNLEKPTNDDVMRSLSRSFSKGDTIRESVLSPRDLGYHTINIIHSTIINGISVEEEKGKFSDIPTYERVNDEEIVENYKIPQWLYAMYSEE
SIO_010081: TSUB_RS24980
subclass of: SO_0000673
so part of: TSUB_RS24980
location: complement(32560..33942)
location: region:32560-33942:-1
so has part: feature:32560-33942:-1:exon

WP_087021200.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:32560-33942:-1:exon

TSUB_RS24985
type: Gene
subclass of: SO_0000704
RO_0002162: 1891207
locus tag: TSUB_RS24985
so part of: sequence
location: 34127..34711
location: region:34127-34711:1
so has part: feature:34127-34711:1:exon
subclass of: SO_0000010

position:34127:1
position: 34127
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:34711:1
position: 34711
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:34127-34711:1:exon

TSUB_RS24985
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1891207
locus tag: TSUB_RS24985
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MPEEIKGWNWGAFILCPFWGIRFGVYRALLSLIPGMGFFVMIWLGLRGNKLAWEADYWVSTYQFKQAQRRWSAYSLIYVILTVSLTFAVVNLDRVDEEFVPPFEMSLKEVSDSKNFKDKIGTPFTTDFNYGRIIPNEAGEISEFGYSIIGLKGQGYVSVSALNQNDEWKIRCLYVFYPEKTPKEAIIPCGSYSQ
SIO_010081: TSUB_RS24985
subclass of: SO_0000673
so part of: TSUB_RS24985
location: 34127..34711
location: region:34127-34711:1
so has part: feature:34127-34711:1:exon

WP_087021197.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:34127-34711:1:exon