Bacillus wiedmannii strain SR52 plasmid unnamed1, complete sequence.
Bacteria; Bacillota; Bacilli; Bacillales; Bacillaceae; Bacillus; Bacillus cereus group.
Submitted (13-SEP-2018) Institute of Oceanology, Chinese Academy of Sciences, 7 Nanhai Road, Qingdao 266071, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP032366.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. July-2016\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 150.0x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/28/2023 10:59:37\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,852\nCDSs (total) :: 5,691\nGenes (coding) :: 5,537\nCDSs (with protein) :: 5,537\nGenes (RNA) :: 161\nrRNAs :: 14, 14, 14 (5S, 16S, 23S)\ncomplete rRNAs :: 14, 14, 14 (5S, 16S, 23S)\ntRNAs :: 114\nncRNAs :: 5\nPseudo Genes (total) :: 154\nCDSs (without protein) :: 154\nPseudo Genes (ambiguous residues) :: 0 of 154\nPseudo Genes (frameshifted) :: 71 of 154\nPseudo Genes (incomplete) :: 90 of 154\nPseudo Genes (internal stop) :: 42 of 154\nPseudo Genes (multiple problems) :: 42 of 154\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF025253.2
GO:0098024 - virus tail, fiber [Evidence IEA]
GO:0046718 - viral entry into host cell [Evidence IEA]; GO:0019062 - virion attachment to host cell [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_016085038.1
COORDINATES: similar to AA sequence:RefSeq:WP_016085036.1
COORDINATES: similar to AA sequence:RefSeq:WP_016085034.1
COORDINATES: similar to AA sequence:RefSeq:WP_014417861.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01760.1
GO:0005198 - structural molecule activity [Evidence IEA]
GO:0016032 - viral process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016085031.1
COORDINATES: similar to AA sequence:RefSeq:WP_016085030.1
COORDINATES: similar to AA sequence:RefSeq:WP_016085029.1
COORDINATES: similar to AA sequence:RefSeq:WP_016085028.1
COORDINATES: similar to AA sequence:RefSeq:WP_016085027.1
COORDINATES: similar to AA sequence:RefSeq:WP_016085026.1
COORDINATES: similar to AA sequence:RefSeq:WP_016085025.1
COORDINATES: similar to AA sequence:RefSeq:WP_016097379.1
GO:0008745 - N-acetylmuramoyl-L-alanine amidase activity [Evidence IEA]
GO:0009253 - peptidoglycan catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016085021.1
YiiX/YebB-like N1pC/P60 family cysteine hydrolase
COORDINATES: similar to AA sequence:RefSeq:WP_016094777.1
COORDINATES: similar to AA sequence:RefSeq:WP_016085015.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004521 - endoribonuclease activity [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]
type II toxin-antitoxin system PemK/MazF family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_016085014.1
COORDINATES: similar to AA sequence:RefSeq:WP_016085011.1
GO:0000287 - magnesium ion binding [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]
RusA family crossover junction endodeoxyribonuclease
COORDINATES: protein motif:HMM:NF019481.2
COORDINATES: similar to AA sequence:RefSeq:WP_016085006.1
COORDINATES: similar to AA sequence:RefSeq:WP_016085003.1
COORDINATES: similar to AA sequence:RefSeq:WP_016085002.1
COORDINATES: similar to AA sequence:RefSeq:WP_016084994.1
COORDINATES: similar to AA sequence:RefSeq:WP_002843991.1
GO:0005971 - ribonucleoside-diphosphate reductase complex [Evidence IEA]
GO:0030145 - manganese ion binding [Evidence IEA]; GO:0004748 - ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor [Evidence IEA]
GO:0009265 - 2'-deoxyribonucleotide biosynthetic process [Evidence IEA]
class 1b ribonucleoside-diphosphate reductase subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_016084991.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0004748 - ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
class 1b ribonucleoside-diphosphate reductase subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_016084990.1
GO:0009263 - deoxyribonucleotide biosynthetic process [Evidence IEA]
class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI
COORDINATES: similar to AA sequence:RefSeq:WP_003127104.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]
GO:0009265 - 2'-deoxyribonucleotide biosynthetic process [Evidence IEA]; GO:0051353 - positive regulation of oxidoreductase activity [Evidence IEA]
anaerobic ribonucleoside-triphosphate reductase activating protein
COORDINATES: similar to AA sequence:RefSeq:WP_006153343.1
GO:0008998 - ribonucleoside-triphosphate reductase activity [Evidence IEA]
anaerobic ribonucleoside-triphosphate reductase
COORDINATES: similar to AA sequence:RefSeq:WP_016084989.1
COORDINATES: similar to AA sequence:RefSeq:WP_016084981.1
COORDINATES: similar to AA sequence:RefSeq:WP_017417824.1
COORDINATES: protein motif:HMM:NF012413.2
GO:0004146 - dihydrofolate reductase activity [Evidence IEA]; GO:0005542 - folic acid binding [Evidence IEA]; GO:0050661 - NADP binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006637021.1
GO:0004799 - thymidylate synthase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016084976.1
COORDINATES: similar to AA sequence:RefSeq:WP_016084973.1
GO:0003824 - catalytic activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016094825.1
COORDINATES: protein motif:HMM:NF021631.2
nucleotidyltransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_016069628.1
COORDINATES: protein motif:HMM:NF025577.2
COORDINATES: similar to AA sequence:RefSeq:WP_016053498.1
COORDINATES: similar to AA sequence:RefSeq:WP_016084939.1
COORDINATES: similar to AA sequence:RefSeq:WP_016084927.1
COORDINATES: similar to AA sequence:RefSeq:WP_016084933.1
COORDINATES: similar to AA sequence:RefSeq:WP_015991795.1
COORDINATES: similar to AA sequence:RefSeq:WP_015986027.1
COORDINATES: similar to AA sequence:RefSeq:WP_016084928.1
COORDINATES: similar to AA sequence:RefSeq:WP_000649354.1
COORDINATES: similar to AA sequence:RefSeq:WP_016084959.1
COORDINATES: similar to AA sequence:RefSeq:WP_016084958.1
COORDINATES: similar to AA sequence:RefSeq:WP_016084957.1
COORDINATES: similar to AA sequence:RefSeq:WP_010494300.1
COORDINATES: similar to AA sequence:RefSeq:WP_016084971.1
COORDINATES: similar to AA sequence:RefSeq:WP_016084970.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0004797 - thymidine kinase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016084953.1
COORDINATES: similar to AA sequence:RefSeq:WP_016084950.1
COORDINATES: similar to AA sequence:RefSeq:WP_016084949.1
COORDINATES: protein motif:HMM:NF016109.2
COORDINATES: similar to AA sequence:RefSeq:WP_018031452.1
COORDINATES: protein motif:HMM:NF013621.2
COORDINATES: similar to AA sequence:RefSeq:WP_005552315.1
nicotinamide phosphoribosyltransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_016084941.1
COORDINATES: similar to AA sequence:RefSeq:WP_016084920.1
COORDINATES: similar to AA sequence:RefSeq:WP_009902627.1
GO:0019867 - outer membrane [Evidence IEA]
GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]
GO:0009254 - peptidoglycan turnover [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016084918.1
COORDINATES: protein motif:HMM:NF024252.2
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_016084914.1
COORDINATES: similar to AA sequence:RefSeq:WP_016084912.1
COORDINATES: similar to AA sequence:RefSeq:WP_016084909.1
COORDINATES: similar to AA sequence:RefSeq:WP_016084908.1
COORDINATES: similar to AA sequence:RefSeq:WP_016058128.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF037906.2
COORDINATES: protein motif:HMM:NF021759.2
COORDINATES: protein motif:HMM:NF015210.2
COORDINATES: similar to AA sequence:RefSeq:WP_016084896.1
COORDINATES: similar to AA sequence:RefSeq:WP_016084897.1
COORDINATES: similar to AA sequence:RefSeq:WP_016084895.1
COORDINATES: similar to AA sequence:RefSeq:WP_016094939.1
COORDINATES: similar to AA sequence:RefSeq:WP_016084892.1
COORDINATES: similar to AA sequence:RefSeq:WP_016084894.1
COORDINATES: protein motif:HMM:NF036314.2
COORDINATES: similar to AA sequence:RefSeq:WP_016084881.1
COORDINATES: protein motif:HMM:NF024803.2
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016084878.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0004386 - helicase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF018653.2
COORDINATES: similar to AA sequence:RefSeq:WP_016084871.1
GO:0030261 - chromosome condensation [Evidence IEA]
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
COORDINATES: similar to AA sequence:RefSeq:WP_016084867.1
COORDINATES: similar to AA sequence:RefSeq:WP_016085267.1
COORDINATES: similar to AA sequence:RefSeq:WP_016084865.1
COORDINATES: similar to AA sequence:RefSeq:WP_016084863.1
COORDINATES: similar to AA sequence:RefSeq:WP_016084862.1
COORDINATES: similar to AA sequence:RefSeq:WP_016084861.1
COORDINATES: similar to AA sequence:RefSeq:WP_016084860.1
COORDINATES: similar to AA sequence:RefSeq:WP_016084859.1
COORDINATES: similar to AA sequence:RefSeq:WP_016084858.1
COORDINATES: similar to AA sequence:RefSeq:WP_016084857.1